James A. Fellows Yates
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1eeeb8a214
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Reduce authors to main + other contributors
Due to tower limitation producing ugly warning
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2023-04-04 11:19:22 +02:00 |
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Sofia Stamouli
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58795264e4
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Merge pull request #271 from nf-core/prototaxites-docs-updates
Standardised taxon table and mOTU database docs improvement
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2023-03-21 10:14:14 +01:00 |
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Sofia Stamouli
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e0b112cdce
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Merge branch 'dev' into prototaxites-docs-updates
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2023-03-21 08:44:48 +01:00 |
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James A. Fellows Yates
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8deb32da72
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Merge pull request #270 from nf-core/index-warn-fix
Fix broken check for host read removal index
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2023-03-20 21:10:40 +01:00 |
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James Fellows Yates
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b0939c3ae9
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Standardised taxon table and mOTU database docs improvement
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2023-03-17 21:03:54 +01:00 |
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James Fellows Yates
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fbecfb6f33
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Fix broken check for host read removal index
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2023-03-17 20:47:09 +01:00 |
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James A. Fellows Yates
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af61e007b3
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Merge pull request #269 from nf-core/reduce-full-test-output
Deactivate saving of reads and other large files for full tests
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2023-03-17 11:46:08 +01:00 |
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James A. Fellows Yates
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142ff2f099
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Apply suggestions from code review
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2023-03-17 10:26:38 +01:00 |
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James Fellows Yates
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577d270423
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Deactivate saving of reads and other large files for full tests
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2023-03-17 10:14:40 +01:00 |
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James A. Fellows Yates
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66a98c2bc8
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Merge pull request #265 from genomic-medicine-sweden/dev
Update changelog after release
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2023-03-13 12:56:40 +01:00 |
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sofstam
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1347f27c11
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Update changelog after release
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2023-03-13 12:21:37 +01:00 |
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James A. Fellows Yates
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eaef6ac9bc
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Apply suggestions from code review
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2023-03-13 10:57:36 +01:00 |
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Sofia Stamouli
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ae3ee470ee
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Merge pull request #264 from sofstam/update_taxpasta_version
Updata taxpasta 0.2.3
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2023-03-13 10:25:55 +01:00 |
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Sofia Stamouli
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0007c99d1c
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Merge branch 'dev' into update_taxpasta_version
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2023-03-13 09:38:10 +01:00 |
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sofstam
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8ecb655952
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Prettier
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2023-03-13 09:11:53 +01:00 |
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sofstam
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213f4e4f23
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Updata taxpasta
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2023-03-13 08:58:59 +01:00 |
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James A. Fellows Yates
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3c4ee927e3
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Merge pull request #263 from nf-core/docs-updates
Update docs based on feedback and add missing results directories
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2023-03-12 12:10:34 +01:00 |
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James A. Fellows Yates
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9550c76c25
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Update README.md
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2023-03-12 11:11:05 +01:00 |
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James A. Fellows Yates
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7f6e162e1c
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Update docs/output.md
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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2023-03-12 11:08:37 +01:00 |
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James A. Fellows Yates
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6266ee782d
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Update README.md
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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2023-03-12 11:08:31 +01:00 |
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James Fellows Yates
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95f9bf1fa9
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Update credits section
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2023-03-12 08:43:56 +01:00 |
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James Fellows Yates
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e49668005f
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Update docs based on feedback and add missing results directories
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2023-03-12 08:35:45 +01:00 |
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Moritz E. Beber
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efa398edab
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Merge pull request #258 from nf-core/clone-maps
refactor: double check maps and validation
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2023-03-11 21:39:49 +01:00 |
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James A. Fellows Yates
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5e400c8c89
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Apply suggestions from code review
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2023-03-11 20:06:59 +01:00 |
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Moritz E. Beber
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bb7323e25d
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fix: restore setting id on FASTQ meta
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2023-03-11 11:34:47 +01:00 |
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Moritz E. Beber
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7104b12e3b
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Update subworkflows/local/longread_preprocessing.nf
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2023-03-11 11:28:42 +01:00 |
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Moritz E. Beber
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fa1c779536
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fix: insert id key again
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2023-03-11 11:28:42 +01:00 |
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Moritz E. Beber
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246da8a7b0
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chore: remove fixme comments
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2023-03-11 11:28:42 +01:00 |
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Moritz E. Beber
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7c1133efb8
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add more comments and slight style changes
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2023-03-11 11:28:42 +01:00 |
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Moritz E. Beber
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5380bc18ec
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fix: channels should match 1:1 without remaining elements
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2023-03-11 11:28:42 +01:00 |
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Moritz E. Beber
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07db3c93e2
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style: use map addition instead of cloning
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2023-03-11 11:28:42 +01:00 |
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Moritz E. Beber
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d17dce5590
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style: use subMap and early returns
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2023-03-11 11:28:42 +01:00 |
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Moritz E. Beber
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0bcea6c993
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style: use parameter for branch closure
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2023-03-11 11:28:42 +01:00 |
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Moritz E. Beber
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b90433f3c2
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style: use parameters for filter closure
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2023-03-11 11:28:42 +01:00 |
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Moritz E. Beber
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aa2410a871
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style: use named parameters for closure
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2023-03-11 11:28:42 +01:00 |
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Moritz E. Beber
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c2ad421051
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refactor: simplify DB validation
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2023-03-11 11:28:42 +01:00 |
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Sofia Stamouli
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53db964bcf
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Merge pull request #260 from alexhbnr/spelling_mistake_README
Update README.md
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2023-03-10 14:03:58 +01:00 |
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Alex Hübner
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f92a405554
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Update README.md
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2023-03-10 12:36:52 +01:00 |
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James A. Fellows Yates
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c1c4180769
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Merge pull request #256 from nf-core/reduce-tests
Reduce number of tests to check just each tool option is tested
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2023-03-07 15:30:06 +01:00 |
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James A. Fellows Yates
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a77517af0d
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Merge pull request #255 from nf-core/config-ordering
Minor clean ups from second release review
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2023-03-07 15:29:32 +01:00 |
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James Fellows Yates
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f3ac1d2a21
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Update License to match nextflow.conifg [skip ci]
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2023-03-07 14:01:09 +01:00 |
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James A. Fellows Yates
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6dbeb5913a
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Remove left over skips
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2023-03-07 13:18:58 +01:00 |
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James A. Fellows Yates
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54e8857233
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Reduce number of tests to check just each tool option is tested
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2023-03-07 13:06:32 +01:00 |
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James Fellows Yates
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98bc6910d5
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Update authors and remove left over comment
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2023-03-07 11:47:54 +01:00 |
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James Fellows Yates
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5c8e2b492c
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Syncronise local modules with other generic container modules
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2023-03-07 11:41:57 +01:00 |
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James A. Fellows Yates
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91a7a03f48
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Apply suggestions from code review
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
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2023-03-07 11:27:19 +01:00 |
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James Fellows Yates
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e92196cd12
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Remove left over comment
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2023-03-07 11:10:10 +01:00 |
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James Fellows Yates
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8ca9fad3b1
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move errorStrategy to config
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2023-03-07 11:09:25 +01:00 |
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James Fellows Yates
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b5a2983c5f
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Make modules entries consistent
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2023-03-07 11:06:35 +01:00 |
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Sofia Stamouli
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d647e61a2f
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Merge pull request #253 from nf-core/futher-further-prerelease-updates
Futher further prerelease updates: FALCO display in MultiQC
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2023-03-06 15:56:50 +01:00 |
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