James Fellows Yates
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2263d96e73
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Merge remote-tracking branch 'origin/master' into post-patch-update
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1 year ago |
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James A. Fellows Yates
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07b926a89e
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Merge pull request #294 from nf-core/patch
Patch release 1.0.1
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1 year ago |
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James A. Fellows Yates
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8ff8ab8b70
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Update CHANGELOG.md
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1 year ago |
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James Fellows Yates
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5d95151f54
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Fix staging
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1 year ago |
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James A. Fellows Yates
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e8b85d0b62
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Update nextflow.config
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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1 year ago |
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James Fellows Yates
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c0897ecc78
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Bump version to 1.0.1
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1 year ago |
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James Fellows Yates
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982fba1b58
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Fix taxpasta not receiving taxonomy directory
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1 year ago |
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James A. Fellows Yates
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9850bdf1fa
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Merge pull request #287 from nf-core/missing-changelog
Misssing changelog manual prettier [skip ci]
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1 year ago |
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James A. Fellows Yates
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4f08b3697f
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Merge branch 'dev' into missing-changelog
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1 year ago |
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Moritz E. Beber
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c4ad03ff9f
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Merge pull request #276 from nf-core/feat-batch
feat: introduce sample batches for krakenuniq
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1 year ago |
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Moritz E. Beber
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66a166dbdc
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docs: tweak parameter schema description
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1 year ago |
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Moritz E. Beber
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08f06b9982
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Apply suggestions from code review
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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Moritz E. Beber
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49086d9475
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docs: add changelog entry
[skip ci]
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1 year ago |
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Moritz E. Beber
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2725fe15a9
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docs: create a schema entry for the new parameter
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1 year ago |
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Moritz E. Beber
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17a9493e6d
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fix: remove typo
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1 year ago |
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Moritz E. Beber
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70dd7cade9
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feat: introduce sample batches for krakenuniq
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1 year ago |
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James A. Fellows Yates
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b299a25bc7
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Merge pull request #286 from nf-core/multiqc-optimisations
MultiQC Optimisations
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1 year ago |
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James A. Fellows Yates
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9fa458f381
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Merge pull request #279 from nf-core/manifest-update
Reduce authors to main + other contributors
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1 year ago |
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James A. Fellows Yates
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2140928638
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Merge pull request #272 from nf-core/final-reads-saving
Add 'final reads for profiling' saving mechanism
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1 year ago |
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James A. Fellows Yates
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ee76a5f38b
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Update conf/modules.config
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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1 year ago |
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James Fellows Yates
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e000ac3038
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Misssing changelog manual prettier [skip ci]
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1 year ago |
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James A. Fellows Yates
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5a09319fb3
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Merge branch 'dev' into multiqc-optimisations
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1 year ago |
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James A. Fellows Yates
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003862d9ea
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Merge pull request #285 from nf-core/update-kraken
BUmp Kraken2 nf-core module to prevent huge logs
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1 year ago |
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James A. Fellows Yates
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c3c91780ab
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Merge pull request #280 from nf-core/replace-exit-with-error
Replace all instance of exit 1 with error for safety and consistency
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1 year ago |
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nf-core-bot
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386b1c9dfd
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[automated] Fix linting with Prettier
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1 year ago |
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James A. Fellows Yates
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d06ac3713d
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Update README.md
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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1 year ago |
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James Fellows Yates
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59f31469c3
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Update CHANGELOG
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1 year ago |
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James Fellows Yates
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1eb951715f
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MultiQC optimisations for DIAMOND and Falco
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1 year ago |
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James Fellows Yates
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0ed110c529
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BUmp Kraken2 nf-core module to prevent huge logs
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1 year ago |
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nf-core-bot
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4f7e2eed8c
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[automated] Fix linting with Prettier
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1 year ago |
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James Fellows Yates
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31e3c21dcb
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Make all saveAs conditions consistent
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1 year ago |
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James A. Fellows Yates
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f476b49d29
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Add team sectionb
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1 year ago |
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James Fellows Yates
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5d90c775e9
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Logic safety!
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1 year ago |
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James A. Fellows Yates
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b3e602dcb3
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Merge branch 'dev' into replace-exit-with-error
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1 year ago |
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James A. Fellows Yates
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0245c4880b
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Merge branch 'dev' into final-reads-saving
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1 year ago |
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James A. Fellows Yates
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105bac7bb9
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Apply suggestions from code review
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1 year ago |
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James A. Fellows Yates
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ee031ebf91
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Apply suggestions from code review
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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1 year ago |
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Sofia Stamouli
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255b492b44
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Merge pull request #274 from sofstam/samtools_fastq
Subsitute samtools/bam2fq with samtools/fastq
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1 year ago |
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James Fellows Yates
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3f34603c00
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Prettier
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1 year ago |
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James Fellows Yates
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ce97a1124e
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Add final documentation
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1 year ago |
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James Fellows Yates
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94e88d788d
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Everywhere account when no-runmerging for single libs
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1 year ago |
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sofstam
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c47b9e55fa
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Mix reads in emit
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1 year ago |
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James Fellows Yates
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e5e0aab59d
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More tweaks
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1 year ago |
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James Fellows Yates
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ca9c0cf8fd
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Further fixes
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1 year ago |
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James A. Fellows Yates
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5eee462b5a
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Update LICENSE
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1 year ago |
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James A. Fellows Yates
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59f8d75e9e
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update CHAGENLGO
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1 year ago |
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James A. Fellows Yates
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03c3169f10
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Replace all instance of exit 1 with error for safety and consistency
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1 year ago |
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James A. Fellows Yates
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1eeeb8a214
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Reduce authors to main + other contributors
Due to tower limitation producing ugly warning
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1 year ago |
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sofstam
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d6b60643d9
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Prettier
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1 year ago |
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sofstam
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021f5f0a22
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Remove samtools/bam2fq module
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1 year ago |