21 commits

Author	SHA1	Message	Date
Alexander Peltzer	c2710b1b63	Merge branch 'master' into varskip_designs	2022-10-19 10:42:00 +02:00
Harshil Patel	8b9661825b	Replace NC_063383.1 fasta and gff and add Nextclade config	2022-08-24 15:21:44 +01:00
Harshil Patel	8dcfcfd856	Add monkeypox genome files to viralrecon genome config file	2022-08-24 12:13:17 +01:00
Harshil Patel	2ab126fa4d	Update default Nextclade dataset to 2022-06-14T12:00:00Z	2022-07-11 18:28:41 +01:00
Maxime U. Garcia	c08cb5e97e	Merge branch 'master' into varskip_designs	2022-06-07 11:58:49 +02:00
Stevin Wilson	dbb71161c5	Added ARTIC v4.1 primer set information	2022-02-04 15:31:51 -05:00
Harshil Patel	9792226f5c	Update genomes.config	2022-01-27 12:45:41 +00:00
Harshil Patel	cd6b8e0f17	Add --nextclade_dataset params	2022-01-17 16:51:55 +00:00
Harshil Patel	f26c465bd4	Add Nextclade genome details to viralrecon genome config	2022-01-17 11:27:10 +00:00
Brad Langhorst	ac4372b610	adds varskip	2021-08-03 13:46:17 -04:00
ameynert	2112168420	Set BLASTDB_LMDB_MAP_SIZE ... This environment variable needs to be set in order to prevent memory allocation errors in the MAKEBLASTDB process.	2021-07-22 15:07:19 +01:00
ameynert	4ceb369af5	eddie.config for viralrecon pipeline	2021-07-21 12:10:43 +01:00
Harshil Patel	962dca7a46	Add ARTIC v1200 primers to genomes config for viralrecon	2021-07-12 12:24:49 +01:00
Harshil Patel	93cfc48afd	Add ARTIC v4 primers to genomes config	2021-06-21 21:04:16 +01:00
drpatelh	01a4f8559e	Update links to be consistent	2021-02-16 13:17:16 +00:00
Harshil Patel	6ffaf922c5	Update genomes.config	2021-02-16 10:28:32 +00:00
Harshil Patel	4de0855218	Update genomes.config	2021-02-15 18:48:03 +00:00
drpatelh	9d500cf679	Reorder params	2021-02-15 17:02:26 +00:00
drpatelh	f283dfb2dc	Add ARTIC primer sets to genome config	2021-02-15 16:58:30 +00:00
Harshil Patel	2300d5a962	Update genomes.config	2020-04-09 18:22:41 +01:00
MaxUlysse	50a44d037b	better docs and organisation of giles	2020-04-09 17:02:36 +02:00