James A. Fellows Yates
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0603aba342
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Remove debugging stuff
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2021-09-09 13:54:01 +02:00 |
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James A. Fellows Yates
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c799784629
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Merge pull request #273 from jfy133/mpcdf-fix
Add auto-cleanup for MPCDF
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2021-09-09 13:41:29 +02:00 |
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James A. Fellows Yates
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d479926c7f
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Update mpcdf.config
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2021-09-09 13:33:56 +02:00 |
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James A. Fellows Yates
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7ec12b6736
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Update eva.config
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2021-09-09 13:10:05 +02:00 |
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James A. Fellows Yates
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96e26a5411
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Merge pull request #272 from jfy133/eva-eager-subprofiles
Bump additional library merge memory for eager @ EVA
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2021-09-08 15:25:07 +02:00 |
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James A. Fellows Yates
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4286a3a342
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Bump additional library merge memor
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2021-09-08 15:16:40 +02:00 |
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Rogan Grant
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a7aca37bc8
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Set autoMounts to true
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2021-09-06 15:15:46 -05:00 |
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Rogan Grant
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b56b7b310b
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Merge pull request #266 from RoganGrant/master
Northwestern University Genomics Nodes (new add)
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2021-09-06 13:26:49 -05:00 |
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James A. Fellows Yates
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39f54db097
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Update container cache
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2021-09-05 12:09:02 +02:00 |
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James A. Fellows Yates
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59a0901b68
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Add library merge steps to have overhead
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2021-09-05 12:07:53 +02:00 |
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Rogan Grant
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54298ca0f7
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Merge branch 'nf-core:master' into master
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2021-09-04 15:37:03 -05:00 |
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rogangrant
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a8d06ee356
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Revert "Forgot a slash :("
This reverts commit d5601fea84 .
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2021-09-04 15:36:05 -05:00 |
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Rogan Grant
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d5601fea84
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Forgot a slash :(
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2021-09-04 15:19:32 -05:00 |
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Rogan Grant
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2c5e454d16
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Updated iGenomes path for odd local structure on Quest
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2021-09-04 15:13:41 -05:00 |
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James A. Fellows Yates
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94cbb031c6
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Update eva.config
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2021-08-30 13:29:44 +02:00 |
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James A. Fellows Yates
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5fbd938bc1
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Export user env too
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2021-08-27 10:08:20 +02:00 |
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James A. Fellows Yates
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bcb844f896
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Merge pull request #268 from jfy133/master
Delete SHH profiles due to decommissioning
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2021-08-23 14:08:13 +02:00 |
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James Fellows Yates
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59af7f0eee
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Delete SHH profiles due to decommissioning
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2021-08-20 10:15:39 +02:00 |
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James A. Fellows Yates
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6701354060
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Add genotyping_ug to SGE fixes
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2021-08-20 10:11:11 +02:00 |
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James Fellows Yates
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b0e344846d
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Changes after code review from @aidaanva
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2021-08-04 10:37:49 +02:00 |
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James Fellows Yates
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76fc461670
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Try new strategy for SGE/JAVA bs
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2021-08-04 10:14:56 +02:00 |
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Rogan Grant
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f793ffaace
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Updated iGenomes location
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2021-08-03 15:10:54 -05:00 |
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James A. Fellows Yates
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00491de038
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Update eva.config
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2021-08-03 13:54:14 +02:00 |
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Rogan Grant
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24a2949fe2
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Had executor options in wrong spot :(
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2021-07-28 18:05:45 -05:00 |
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Rogan Grant
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6862fb8bfd
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testing ternary operatory
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2021-07-28 18:01:03 -05:00 |
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Rogan Grant
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bcc69fe83c
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Enable use of himem nodes
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2021-07-28 17:54:51 -05:00 |
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Rogan Grant
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ac11ca5568
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Remove echo used for testing
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2021-07-28 16:48:08 -05:00 |
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Rogan Grant
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3dd4f16d09
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Added indicator for testing
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2021-07-28 14:01:12 -05:00 |
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Rogan Grant
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09ed4d54b9
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Just make command a single line for simplicity
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2021-07-28 13:52:26 -05:00 |
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Rogan Grant
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09e0ea2674
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typo
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2021-07-28 13:46:40 -05:00 |
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Rogan Grant
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e1e0810d1b
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Clean up module loading script
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2021-07-28 13:44:48 -05:00 |
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Rogan Grant
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e2c566ed13
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Testing "automounts"
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2021-07-28 13:38:06 -05:00 |
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Rogan Grant
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f104250ff4
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Removed comment
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2021-07-28 13:34:49 -05:00 |
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Rogan Grant
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9df267a192
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Merged duplicate params
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2021-07-28 13:27:17 -05:00 |
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Rogan Grant
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ff6823ec1d
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removed unnecessary space
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2021-07-28 13:22:52 -05:00 |
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Rogan Grant
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9957e9eea1
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Version 1 of custom config with queue-switching for long jobs and module loading
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2021-07-28 13:11:02 -05:00 |
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Barry digby
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70b2644c9a
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.
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2021-07-27 17:39:37 +01:00 |
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Barry digby
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2b6e80561a
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Merge branch 'master' of https://github.com/nf-core/configs into
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2021-07-27 17:13:17 +01:00 |
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Barry digby
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4f962260d0
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s
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2021-07-27 17:08:53 +01:00 |
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Barry digby
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04c0da5a2f
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nuig confg (lugh)
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2021-07-27 17:05:27 +01:00 |
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ameynert
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2112168420
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Set BLASTDB_LMDB_MAP_SIZE
This environment variable needs to be set in order to prevent memory allocation errors in the MAKEBLASTDB process.
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2021-07-22 15:07:19 +01:00 |
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ameynert
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4ceb369af5
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eddie.config for viralrecon pipeline
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2021-07-21 12:10:43 +01:00 |
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Maxime U. Garcia
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30e058abf0
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Merge branch 'master' into master_kraken
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2021-07-20 09:26:56 +02:00 |
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Harshil Patel
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962dca7a46
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Add ARTIC v1200 primers to genomes config for viralrecon
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2021-07-12 12:24:49 +01:00 |
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Gisela Gabernet
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e2088a008d
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Merge branch 'master' into master
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2021-07-03 12:24:42 +02:00 |
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ggabernet
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ee2e8392ab
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add aws_tower profile
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2021-07-03 12:17:21 +02:00 |
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Harshil Patel
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69f63a006d
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Merge pull request #254 from drpatelh/articv4
Add ARTIC v4 primers to genomes config for viralrecon
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2021-07-01 12:31:02 +01:00 |
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Gisela Gabernet
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aae0f0bf07
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Merge pull request #255 from ggabernet/master
update cfc configs
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2021-07-01 10:59:25 +02:00 |
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ggabernet
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d59d099fe8
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remove load module in cfc configs
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2021-07-01 10:52:54 +02:00 |
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James A. Fellows Yates
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5f4b915ae8
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Update eva.config
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2021-06-29 11:31:00 +02:00 |
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