625 commits

Author	SHA1	Message	Date
James Fellows Yates	06b40798c0	Exclude bionode8	2021-12-02 10:35:35 +01:00
Phil Ewels	4785ceccba	Merge pull request #245 from ikeller/unibe_ibu ... Unibe ibu	2021-11-19 00:56:25 +01:00
Phil Ewels	291fcb20a5	Merge pull request #297 from vsmalladi/azure ... Add in template for Azure Workflow	2021-11-19 00:55:54 +01:00
Venkat Malladi	72ccd44ad6	Remove storage name.	2021-11-18 17:52:51 -06:00
Venkat Malladi	ed4c1d5f22	Remove work_dir option.	2021-11-18 17:52:24 -06:00
Phil Ewels	e090bbd5fe	Merge pull request #241 from asafpr/master ... replaced owner in JAX	2021-11-19 00:03:11 +01:00
Phil Ewels	a26b3bf1e3	Merge branch 'master' into unibe_ibu	2021-11-19 00:02:30 +01:00
Phil Ewels	15080d958e	Merge pull request #283 from aunderwo/master ... change max_time diretcive in the correct place	2021-11-19 00:00:52 +01:00
Venkat Malladi	13a8d7aebe	Fix spelling.	2021-11-18 15:51:12 -06:00
Venkat Malladi	845a9ce971	Update Readme with more inforamtion on the options.	2021-11-18 15:47:27 -06:00
Venkat Malladi	219244f1b4	Add in sample datastorage for Illumina Platinum genomes.	2021-11-18 15:28:34 -06:00
Venkat Malladi	b1a9c2e4c6	Add in fake key.	2021-11-18 15:20:59 -06:00
Venkat Malladi	a8075ee938	Fix configuration to pass.	2021-11-18 15:15:23 -06:00
Venkat Malladi	237f91a3b7	Add in minmum config for azure.	2021-11-18 14:51:39 -06:00
Harshil Patel	a098ad9e06	Add Chris as main contact at The Crick	2021-11-03 11:11:05 +00:00
Phil Ewels	501db6bd2b	Update conf/uppmax.config ... Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>	2021-11-02 23:55:27 +01:00
Phil Ewels	c842ca70a7	Address review comments	2021-11-02 13:32:19 +01:00
Phil Ewels	9a17fdb6d9	Update conf/uppmax.config ... Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>	2021-11-02 09:58:04 +01:00
Phil Ewels	c7dc9aa892	UPPMAX profile - minor tweaks ... * Only one params block instead of two * Return only one 'grep' result and don't pipe to 'head' * Use .startsWith instead of regex matching * Print detected cluster name in the profile description	2021-11-02 09:15:01 +01:00
Pontus Freyhult	a04b5079f0	Make memory checks use closed intervals	2021-11-02 07:55:52 +01:00
James A. Fellows Yates	ffdb0a937f	Take previous working one I think	2021-10-18 10:58:06 +02:00
James A. Fellows Yates	b269a577e6	Revert 1240k	2021-10-18 10:52:28 +02:00
Thiseas C. Lamnidis	e741ecb7a7	Update eva.config	2021-10-13 13:04:41 +02:00
Thiseas C. Lamnidis	92648c1c1f	added 1240k profile	2021-10-12 15:12:49 +02:00
Mahesh Binzer-Panchal	ac815ce790	Merge branch 'master' into add_snic_tmp	2021-10-11 09:57:49 +02:00
Pontus Freyhult	33ae41bc91	Merge pull request #226 from pontus/master ... UPPMAX: Allow jobs needing more memory than thin nodes, pick up cluster info through slurm	2021-10-10 12:05:07 +02:00
James A. Fellows Yates	73b6b74c69	Merge pull request #279 from pierrespc/master ... Added Configuration files for running in Maestro HPC at Pasteur Institute, Paris	2021-10-08 19:15:47 +02:00
Mahesh Binzer-Panchal	747a89b4c5	Update conf/uppmax.config	2021-10-08 13:40:59 +02:00
pierrespc	035ab61f61	added unlimitedtime profile to maestro; changed cache for bwa process	2021-10-08 09:05:46 +02:00
Mahesh Binzer-Panchal	e557e94bfb	Add SNIC_TMP to config	2021-10-07 16:05:03 +02:00
FriederikeHanssen	f1756ba121	Merge branch 'nf-core:master' into cfc	2021-10-04 18:04:18 +02:00
pierrespc	1621585558	improving documentation	2021-10-04 16:08:33 +02:00
pierrespc	e5d4a357c5	clean doc	2021-10-04 15:08:01 +02:00
Falko Hofmann	0950eb3518	Merge pull request #251 from phue/cbe_singularity_workaround ... cbe: send SIGUSR2 upon job termination	2021-10-04 13:24:53 +02:00
Rike	f6e16f2872	Add check_resource to respect max_resource/max_cpus	2021-10-04 10:14:02 +02:00
pierrespc	f6266879d6	edited maestronuclear and maestromitocondrial configs. The latter has not been optimized yet	2021-09-29 13:47:35 +02:00
pierrespc	b71df6fe57	renamed eager pipeline config file	2021-09-29 13:22:07 +02:00
pierrespc	9ea3e2096a	long and normal qos profiles defined now in an unique maestro config file. maestro.config also defined in pipeline/eager for ressources assignation to specific processes	2021-09-29 13:11:14 +02:00
Bjørn Peare Bartholdy	e750a6d445	Update conf/alice.config ... Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>	2021-09-28 13:34:12 +02:00
Bjørn Peare Bartholdy	197bd6cfb1	Merge branch 'nf-core:master' into master	2021-09-28 12:09:50 +02:00
bbartholdy	b6ccb46383	add ALICE profile	2021-09-28 12:08:27 +02:00
Mei Wu	79a79f7d8d	added pipeline-specific config	2021-09-28 10:38:25 +02:00
Mei Wu	c2d74b290a	fix md	2021-09-27 16:25:02 +02:00
Mei Wu	a8a2027f70	Merge branch 'master' into hasta	2021-09-27 16:12:23 +02:00
Mei Wu	06fac1dcfc	initial commit	2021-09-27 16:05:32 +02:00
Mei Wu	ae0adb056f	initial commit	2021-09-27 16:05:19 +02:00
Anthony Underwood	7469e20b4e	change max_time diretcive in the correct place	2021-09-25 09:23:24 +01:00
Anthony Underwood	6a970dc4a8	update max time for long queue	2021-09-23 11:59:45 +01:00
Patrick Hüther	1cbe2759c4	fix invalid rapid qos selection ... it only applies to the c partition	2021-09-22 11:54:27 +02:00
pierrespc	3e22b85b02	maestro only for normal qos	2021-09-22 10:13:46 +02:00