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Author SHA1 Message Date
Phil Ewels
a9aae577ef
Merge pull request #215 from Emiller88/ganymede-update 2021-03-22 19:18:02 +01:00
Edmund Miller
a6975cdd4e
fix(ganymede): large => high 
Co-authored-by: drpatelh <drpatelh@users.noreply.github.com>
 2021-03-22 12:42:56 -05:00
Edmund Miller
34ccce9531
fix(ganymede): Add process resources 
Trimgalore though it can be a bottom neck, doesn't require the 1 big
memory node we have and can be run on the genomics queue.
 2021-03-21 21:47:59 -05:00
Edmund Miller
4570718b12
fix(ganymede): Add TMPDIR and SINGULARITY_CACHEDIR env variables 2021-03-21 21:45:39 -05:00
Asaf Peer
30c864e112 added JAX conf 2021-03-21 06:49:11 -04:00
Asaf Peer
93bde78faa added JAX conf 2021-03-21 06:47:52 -04:00
ameynert
b48136a62e
Added pipeline-specific config files 2021-03-18 12:55:03 +00:00
ameynert
af6a6b1060
Details on running on eddie 
Removed Conda support, Singularity by default. Added login and screen session on wild west node options.
 2021-03-18 12:48:48 +00:00
ameyner2
bb388fb88b Merge branch 'master' of github.com:ameynert/configs 2021-03-18 12:32:11 +00:00
ameyner2
059d353a1e Removed Conda, added automount Singularity 2021-03-18 12:31:56 +00:00
ameynert
4ad6bb2bec
Singularity info 2021-03-17 14:50:40 +00:00
Harshil Patel
2ce1e2a9cc
Create rnaseq.config 2021-03-17 12:32:47 +00:00
ameyner2
d4cd07c646 Typo in beforescript 2021-03-17 09:21:26 +00:00
Maxime Garcia
ec11a9a951
Merge pull request #212 from noirot/master 
Add IFB config
 2021-03-16 16:55:38 +01:00
Noirot Céline
e3216ccf79 typo 2021-03-16 16:00:56 +01:00
Noirot Céline
cc17045914 Add institution 2021-03-16 15:58:29 +01:00
Noirot Céline
7e9f83ee81 Add IFB config 2021-03-16 15:54:19 +01:00
ameyner2
cfe13fe6c1 Fixed typo & added singularity tmpdir 2021-03-15 15:42:30 +00:00
Ashley S Doane
6343a7f87c
Update wcm.md 2021-03-11 14:01:07 -05:00
Ashley S Doane
d630bcfb6c
Create wcm.md 2021-03-11 13:59:55 -05:00
Ashley S Doane
e7f8189dfc
Create wcm.config 2021-03-11 13:52:11 -05:00
Patrick Hüther
a64dfd98c2
Merge pull request #209 from phue/cbe_rapid_qos 
cbe: add rapid qos
 2021-03-10 21:03:08 +01:00
phue
da3bd2693d cbe: add rapid qos 
and update config url
 2021-03-10 11:26:01 +01:00
ameynert
bc961c7990
Merge pull request #1 from ggrimes/patch-1 
changed # to // for comments
 2021-03-04 19:48:45 +00:00
Graeme Grimes
babeccd020
changed # to // for comments 2021-03-04 16:45:21 +00:00
ameynert
4c0111f598
Eddie profile documentation initial commit 2021-03-04 14:46:58 +00:00
ameynert
6f09a233f0
Added singularity module 2021-03-04 14:46:23 +00:00
ameynert
3af2c6409f
Initial commit of eddie.config 2021-03-03 09:59:16 +00:00
ameynert
11e2083fb1
Added eddie profile to nfcore_custom.config list 2021-03-03 09:57:34 +00:00
Alexander Peltzer
bb8e82e9c7
Merge pull request #208 from maxibor/master 
Update shh config after CDAG departure
 2021-02-17 10:41:13 +01:00
maxibor
286e18b80c update shh config after CDAG departure 2021-02-17 10:22:05 +01:00
Harshil Patel
d457699de1
Merge pull request #207 from drpatelh/primers 
Update links to be consistent for viralrecon genomes raw URLs
 2021-02-16 13:25:20 +00:00
drpatelh
01a4f8559e Update links to be consistent 2021-02-16 13:17:16 +00:00
Harshil Patel
6ffaf922c5
Update genomes.config 2021-02-16 10:28:32 +00:00
Alexander Peltzer
a4630a926d
Merge pull request #206 from marchoeppner/ccga_dx_update 
Updating the CCGA DX profile to new storage system
 2021-02-16 09:46:54 +01:00
Marc Hoeppner
1f2fce00aa Updating the CCGA DX profile to new storage system 2021-02-16 09:02:16 +01:00
Harshil Patel
4de0855218
Update genomes.config 2021-02-15 18:48:03 +00:00
Harshil Patel
76750ad59b
Merge pull request #205 from drpatelh/primers 
Add ARTIC primer sets to genome config
 2021-02-15 17:16:13 +00:00
drpatelh
9d500cf679 Reorder params 2021-02-15 17:02:26 +00:00
drpatelh
f283dfb2dc Add ARTIC primer sets to genome config 2021-02-15 16:58:30 +00:00
James A. Fellows Yates
0bac3691e3
Create mpcdf.config 2021-02-14 18:07:40 +01:00
James A. Fellows Yates
4339e5872c
Update eager.config 2021-02-14 18:05:06 +01:00
James Fellows Yates
5bfb9510c7 Add to testing 2021-02-14 17:59:55 +01:00
James Fellows Yates
a78aac327d Linting fixes 2021-02-14 17:58:50 +01:00
James Fellows Yates
537f52a640 Add MPI-EVA profile 2021-02-14 17:50:20 +01:00
James A. Fellows Yates
f0ba4853df
Merge pull request #14 from nf-core/master 
Latest changes into fork
 2021-02-14 08:50:51 +01:00
ggabernet
9b5bcbd434 update aws clipath 2021-02-09 22:06:59 +01:00
ggabernet
0909708b97 update with upstream 2021-02-09 22:01:27 +01:00
James A. Fellows Yates
86566ddd3b
Merge pull request #204 from jfy133/master 
Add a 'big_data' profile for eager @ SHH
 2021-02-04 15:07:52 +01:00
James A. Fellows Yates
e32f1e46ff
Update shh.config 2021-02-04 08:13:16 +01:00