drpatelh
165af5122f
Update docs
2020-08-03 11:39:23 +01:00
drpatelh
b804076959
Remove hard Singularity version
2020-08-03 11:38:10 +01:00
Alexander Peltzer
11f6107922
Merge pull request #174 from maxibor/master
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Add temporary CDAG setting for SHH config
2020-07-23 16:09:28 +02:00
maxibor
69a0bd572b
add temporary CDAG setting for SHH config
2020-07-23 15:38:28 +02:00
James A. Fellows Yates
d38ffc289b
Merge pull request #173 from jfy133/shh-eager-hops-update
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Remove now deprecated EAGER flag for HOPS profile
2020-07-20 11:34:49 +02:00
James A. Fellows Yates
57ac9257a9
Remove now deprecated EAGER flag for HOPS profile
2020-07-20 11:29:12 +02:00
Alexander Peltzer
a498e98342
Merge pull request #170 from jfy133/master
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Make walltimes more sophisticated and add a HOPS profile for nf-core/eager @ SHH
2020-07-15 15:11:24 +02:00
James A. Fellows Yates
84e03b8264
Re-bump default walltimes after debugging/testing
2020-07-11 18:31:04 +02:00
James A. Fellows Yates
8f6409d144
Remove min support percent value to avoid confusion
2020-07-08 15:26:19 +02:00
James A. Fellows Yates
1af9ce293c
Update hops profile based on requests from pathogen group
2020-07-08 15:22:33 +02:00
James A. Fellows Yates
c57a404f18
Add desc for hops
2020-07-08 10:45:43 +02:00
jfy133
15dad7e2e7
Add caveats for EAGER @ SHH profiles
2020-07-08 09:47:03 +02:00
jfy133
926c14f7ee
Cleverer process time submission
2020-07-08 09:36:56 +02:00
jfy133
563c27e1bb
Try again to get better time resource submission
2020-07-08 09:36:28 +02:00
James A. Fellows Yates
c6905b609e
Update shh.config
2020-07-08 09:25:21 +02:00
James A. Fellows Yates
b360ce26bc
Update shh.config
2020-07-08 09:24:06 +02:00
James A. Fellows Yates
31edb4b5d7
Update shh.config
2020-07-08 09:20:00 +02:00
James A. Fellows Yates
aac3478e86
Add better task time values to account for large data
2020-07-08 09:12:11 +02:00
James A. Fellows Yates
737d826932
Update shh.config
2020-07-08 08:36:04 +02:00
piotr-faba-ardigen
ba24f1a1c8
Merge pull request #168 from piotr-faba-ardigen/add_bi_config
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Fix bi config
2020-07-07 14:56:43 +02:00
James A. Fellows Yates
b2e043ab59
Add documentation for HOPS profile for eager @ SHH
2020-07-07 14:35:42 +02:00
James A. Fellows Yates
fcdbeaa446
Merge branch 'master' into master
2020-07-07 14:34:10 +02:00
James A. Fellows Yates
af01fccba1
Add a HOPS profile for nf-core/eager @ SHH
2020-07-07 14:31:11 +02:00
James A. Fellows Yates
7bfe43cad5
Merge pull request #169 from nf-core/shh-eager-update
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Remove default non-profile bwa parameters from eager profile
2020-07-07 14:02:13 +02:00
Piotr Faba
cb7a6f756a
reduce complexity
2020-07-07 13:48:28 +02:00
James A. Fellows Yates
5517d2cbe0
Remove default non-profile bwa parameters from eager profile
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I realised today this is dangerous as these would not necessarily be reported if a user doesn't understand the profiles. Therefore removing these so nf-core/eager defaults are always used unless a specific profile (which would be described in the command itself) is explicitly named.
2020-07-07 13:29:13 +02:00
Piotr Faba
4181184f58
fix spaces
2020-07-02 22:00:37 +02:00
Piotr Faba
4828e78708
fix error introduced earlier
2020-07-02 21:57:44 +02:00
James A. Fellows Yates
530da4d8c0
Merge pull request #167 from jfy133/master
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Bump number of eager @shh retries to account for deep sequencing data
2020-06-30 11:33:29 +02:00
James A. Fellows Yates
c52428cd72
Bump number of eager @shh retries to account for deep sequencing data
2020-06-30 08:19:25 +02:00
Alexander Peltzer
2801f25657
Merge pull request #166 from adrlar/master
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Fixing an autoMounts bug for icr_davros
2020-06-26 17:52:05 +02:00
Adrian
5b890d571a
adding icr_davros to list
2020-06-26 13:40:15 +01:00
Adrian
e375ad97ad
reverting autoMounts due to bug
2020-06-26 13:39:37 +01:00
Phil Ewels
cd9fbb22dc
Merge pull request #161 from ewels/uct_hpc
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Update UCT hex -> hpc
2020-06-22 09:18:43 +02:00
Alexander Peltzer
7774a6a8f3
Merge pull request #163 from piotr-faba-ardigen/add_bi_config
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resolve #162 bug
2020-06-19 08:57:44 +02:00
Piotr Faba
cb26bef3f3
resolve #162 bug
2020-06-18 20:30:05 +02:00
Alexander Peltzer
bb7f67e2b5
Merge pull request #160 from ewels/master
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Merge czbiohub_aws_highpriority profile into czbiohub_aws
2020-06-17 19:20:07 +02:00
Phil Ewels
18a1a319ec
More uct_hex references
2020-06-17 15:25:07 +02:00
Phil Ewels
29f5fa6ce4
uct_hpc docs, readme
2020-06-17 15:22:42 +02:00
Phil Ewels
53e118210f
Copy over HPC config
2020-06-17 15:20:22 +02:00
Phil Ewels
dbfcd7c5e9
Rename uct_hex > uct_hpc
2020-06-17 15:17:22 +02:00
Phil Ewels
17824d2d62
Merge czbiohub_aws_highpriority profile into czbiohub_aws
2020-06-16 15:20:39 +02:00
Phil Ewels
e091ec259e
Merge pull request #158 from phue/singularity_global
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CBE: don't load singularity module
2020-06-05 12:20:39 +02:00
phue
6d356cc918
CBE: don't load singularity module
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singularity is now installed from CentOS repos, the environment module will be removed
2020-06-05 12:07:26 +02:00
Alexander Peltzer
adf90f3994
Merge pull request #146 from adrlar/master
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Adding config for ICR davros cluster
2020-06-03 20:09:49 +02:00
Adrian
3e4db8c845
adding icr_davros to test
2020-06-03 14:55:58 +01:00
Alexander Peltzer
f877644059
Merge branch 'master' into master
2020-05-29 11:43:47 +02:00
Alexander Peltzer
0d5899eb26
Merge pull request #157 from nf-core/bi-docs
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Add BI to main readme.md
2020-05-28 10:25:19 +02:00
Alexander Peltzer
dd56355c7c
Update bi.md
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No trailing spaces it said.
2020-05-28 10:18:16 +02:00
Alexander Peltzer
f4df5b5a75
Add BI Docs
2020-05-28 10:16:22 +02:00