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Author SHA1 Message Date
phue
18ed48f398 deprecate igenomesIgnore in favor of igenomes_ignore 
keep both for now until all the pipelines have been synced
 2019-10-28 11:38:24 +01:00
Patrick Hüther
8e5cc7838c
Merge pull request #76 from phue/cbe_dynamic 
cbe: dynamic qos logic
 2019-10-28 11:23:23 +01:00
phue
123f199b68 cbe: dynamic qos logic 2019-10-27 20:44:08 +01:00
James A. Fellows Yates
28cd84d44a
Merge pull request #74 from maxibor/master 
Resource based queue choice for SHH config
 2019-10-25 20:17:47 +02:00
Maxime Borry
834601f05b Merge branch 'master' of https://github.com/nf-core/configs 2019-10-25 15:52:23 +02:00
Maxime Borry
7a2fe44b43 resource based queuing 2019-10-25 15:50:49 +02:00
maxibor
5e54912ada add queue choice 2019-10-25 14:08:02 +02:00
Alexander Peltzer
2b99228ce8
Merge pull request #73 from abretaud/genouest 
Add Genouest cluster
 2019-10-17 13:18:04 +02:00
Anthony Bretaudeau
883a761651 add link 2019-10-16 18:45:26 +02:00
Anthony Bretaudeau
1f2786c78f add genouest cluster 2019-10-16 18:15:04 +02:00
Patrick Hüther
b9e4ba71d0
Merge pull request #72 from phue/cbe-singularity 
cbe: update singularity version
 2019-10-10 21:27:21 +02:00
phue
9b3fda36f6 update singularity version 
singularity/3.1.0 is not available anymore
 2019-10-10 21:22:19 +02:00
Alexander Peltzer
efa402010a
Merge pull request #70 from sven1103/master 
Sends weblog messages over HTTPS
 2019-10-10 13:30:21 +02:00
Sven Fillinger
dc3faf8a5f Sends weblog messages over HTTPS 2019-10-10 12:56:39 +02:00
Alexander Peltzer
45e331f362
Merge pull request #69 from sven1103/master 
Refactors weblog url for cfc and binac
 2019-10-08 15:15:50 +02:00
Sven Fillinger
855da0cee3 Refactors weblog url 2019-10-08 14:19:42 +02:00
Alexander Peltzer
ed8c9d9e7a
Update cfc.config 2019-10-08 13:20:58 +02:00
Alexander Peltzer
1e54d9510d
Update cfc.config 2019-10-08 13:15:49 +02:00
Alexander Peltzer
865909ac54
Update cfc.config 2019-10-08 13:14:21 +02:00
Alexander Peltzer
5fae33669d
Update cfc.config 
Try this out 👍
 2019-10-08 13:07:28 +02:00
Alexander Peltzer
659fe3cadc
Merge pull request #68 from nf-core/CFC-Singularity-Cache 
Add Singularity Cache Directory
 2019-10-08 12:51:08 +02:00
Alexander Peltzer
4555dd7d36
Update conf/cfc.config 2019-10-08 12:51:01 +02:00
Alexander Peltzer
abb6780081
Add Singularity Cache Directory 2019-10-08 12:48:24 +02:00
Alexander Peltzer
dba5a72817
Merge pull request #67 from phue/cbe_profile 
add cbe config
 2019-09-23 14:51:17 +02:00
phue
fb60856e40 point travis to local clone 
Previously travis tests could only succeed if the config was already present in the master branch, but for newly added
configs it would always fail.

This commit sets custom_config_base to the local clone of the PR branch on the Travis VM where the file is present.
 2019-09-23 13:57:58 +02:00
phue
d7e891a576 Revert "point travis to local clone" 
This reverts commit 014111b925.
 2019-09-23 13:55:43 +02:00
phue
014111b925 point travis to local clone 
Previously travis tests could only succeed if the config was already present in the master branch, but for newly added
configs it would always fail.

This commit sets custom_config_base to the local clone of the PR branch on the Travis VM where the file is present.
 2019-09-23 13:42:11 +02:00
phue
5e257e7e9a add cbe profile 2019-09-22 16:45:09 +02:00
Alexander Peltzer
836da97efd
Merge pull request #66 from marchoeppner/ccga-config 
Updating CCGA configs - adding cache dir and mount points
 2019-09-03 17:25:34 +02:00
marchoeppner
3b638e9ccd Fixing typo in ccga_dx config 2019-09-03 15:37:15 +02:00
Szilveszter Juhos
c3c0d088dd
typo 2019-08-16 11:13:32 +02:00
Szilveszter Juhos
e5d8f20204
Merge pull request #65 from MaxUlysse/master 
fix: update and rearrange munin configuration file and docs
 2019-08-16 11:06:32 +02:00
marchoeppner
486cdfce5f Updating CCGA configs - adding cache dir and mount points 2019-08-07 13:19:16 +02:00
MaxUlysse
4183090379 fix: reduce cpu and mem usage 2019-08-07 12:26:51 +02:00
MaxUlysse
23dd3dd098 Merge branch 'master' of github.com:MaxUlysse/nf-core_configs 2019-08-07 11:56:52 +02:00
MaxUlysse
f69524d59a feat: update docs 2019-08-07 11:56:10 +02:00
MaxUlysse
0bd19517b3 fix: typos 2019-08-07 11:55:56 +02:00
Maxime Garcia
d6a763214c
Update conf/munin.config 
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
 2019-08-07 11:47:47 +02:00
Maxime Garcia
12fb2a60c5
Update conf/munin.config 
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
 2019-08-07 11:47:41 +02:00
MaxUlysse
332ba0dadb fix: update and rearrange munin configuration file and docs 2019-08-07 11:10:48 +02:00
Martin Proks
da2a9047b0
fix: added kraken to the list (#64) 2019-08-05 14:59:36 +02:00
Martin Proks
c583aa0233 Added kraken config (#15) 
* Added kraken template
* docs: updated some info
* fix: updated igenomes_base path
 2019-08-05 11:19:05 +02:00
Harshil Patel
5abe8bca35
Merge pull request #60 from drpatelh/master 
Attempt to get travis tests working
 2019-08-01 13:46:44 +01:00
drpatelh
91a5e64e1c Ignore czbiohub_aws 2019-08-01 09:42:50 +01:00
drpatelh
e0c684ee8f Aarrrgh pulling configs from master 2019-07-31 23:39:42 +01:00
drpatelh
a692ded933 Remove workDir in czbiohub 2019-07-31 23:30:51 +01:00
drpatelh
7ee70fb742 Add in uppmax-devel 2019-07-31 22:52:20 +01:00
drpatelh
0326b56038 Add czbiohub back in 2019-07-31 22:48:22 +01:00
drpatelh
eb0e89eeaa Remove SCRATCH variable 2019-07-31 22:44:54 +01:00
drpatelh
f3e61fdd66 Add prince back in 2019-07-31 22:40:43 +01:00