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Author	SHA1	Message	Date
Rogan Grant	bcc69fe83c	Enable use of himem nodes	2021-07-28 17:54:51 -05:00
Rogan Grant	ac11ca5568	Remove echo used for testing	2021-07-28 16:48:08 -05:00
Rogan Grant	3dd4f16d09	Added indicator for testing	2021-07-28 14:01:12 -05:00
Rogan Grant	09ed4d54b9	Just make command a single line for simplicity	2021-07-28 13:52:26 -05:00
Rogan Grant	09e0ea2674	typo	2021-07-28 13:46:40 -05:00
Rogan Grant	e1e0810d1b	Clean up module loading script	2021-07-28 13:44:48 -05:00
Rogan Grant	e2c566ed13	Testing "automounts"	2021-07-28 13:38:06 -05:00
Rogan Grant	f104250ff4	Removed comment	2021-07-28 13:34:49 -05:00
Rogan Grant	9df267a192	Merged duplicate params	2021-07-28 13:27:17 -05:00
Rogan Grant	ff6823ec1d	removed unnecessary space	2021-07-28 13:22:52 -05:00
Rogan Grant	9957e9eea1	Version 1 of custom config with queue-switching for long jobs and module loading	2021-07-28 13:11:02 -05:00
Rogan Grant	30ca555060	Added nu_genomics to list	2021-07-28 13:10:35 -05:00
Rogan Grant	e28a836702	Added nu_genomics to list	2021-07-28 13:10:18 -05:00
Rogan Grant	40170632aa	First draft of markdown file, with instructions for installing nextflow and getting access	2021-07-28 13:04:32 -05:00
Rogan Grant	2af0f4a774	Added link to NU Genomics markdown	2021-07-28 13:03:59 -05:00
BarryDigby	732c3cfe7d	Merge pull request #262 from BarryDigby/master ... NUIG config	2021-07-28 13:00:50 +01:00
Barry digby	2c6b9176e2	Merge branch 'master' of github.com:BarryDigby/configs	2021-07-28 12:19:45 +01:00
Barry digby	ef6b13e377	tabs rm	2021-07-28 12:19:11 +01:00
BarryDigby	871b82f6f4	Merge branch 'master' into master	2021-07-28 12:16:16 +01:00
Barry digby	f62298d211	w	2021-07-28 11:44:06 +01:00
Barry digby	2fc8082aad	w	2021-07-28 11:43:39 +01:00
Barry digby	11cb6cc70d	w	2021-07-28 11:41:42 +01:00
Barry digby	380adf083a	markdowwwwn	2021-07-28 11:41:16 +01:00
Maxime U. Garcia	f82da1de71	Merge pull request #261 from maxulysse/master_cambridge ... fix: closes #260 + sort some lines	2021-07-28 10:10:39 +02:00
Barry digby	70b2644c9a	.	2021-07-27 17:39:37 +01:00
Barry digby	2a06d956b3	mdlint so picky : (	2021-07-27 17:18:42 +01:00
Barry digby	b7c7115f1e	lll ... Merge branch 'nf-core-master'	2021-07-27 17:13:58 +01:00
Barry digby	2b6e80561a	Merge branch 'master' of https://github.com/nf-core/configs into	2021-07-27 17:13:17 +01:00
Barry digby	4f962260d0	s	2021-07-27 17:08:53 +01:00
Barry digby	04c0da5a2f	nuig confg (lugh)	2021-07-27 17:05:27 +01:00
MaxUlysse	895c4eb610	fix: closes #260 + sort some lines	2021-07-27 16:35:19 +02:00
Harshil Patel	6ede44b221	Merge pull request #258 from ameynert/master ... Update eddie config docs & added viralrecon config	2021-07-22 15:14:54 +01:00
ameynert	2112168420	Set BLASTDB_LMDB_MAP_SIZE ... This environment variable needs to be set in order to prevent memory allocation errors in the MAKEBLASTDB process.	2021-07-22 15:07:19 +01:00
ameynert	17fad9dd15	Update pipeline/viralrecon.config ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-07-21 12:27:09 +01:00
ameynert	d9abb7d59f	Added eddie config to viralrecon	2021-07-21 12:23:47 +01:00
ameynert	5224eb5574	Updated resources folder & institute name ... Local resources folder was re-organized & re-named BioinformaticsResources. Added note about viralrecon & atacseq pipeline-specific config. IGMM name-changed recently; updated to IGC.	2021-07-21 12:15:17 +01:00
ameynert	4ceb369af5	eddie.config for viralrecon pipeline	2021-07-21 12:10:43 +01:00
ameynert	0da2c57784	Merge pull request #4 from nf-core/master ... Merge from nf-core/configs	2021-07-21 12:09:32 +01:00
Maxime U. Garcia	47217cae5b	Merge pull request #231 from maxulysse/master_kraken ... Remove kraken profile	2021-07-20 09:29:47 +02:00
Maxime U. Garcia	30e058abf0	Merge branch 'master' into master_kraken	2021-07-20 09:26:56 +02:00
Harshil Patel	836d3c4015	Merge pull request #257 from drpatelh/V1200 ... Add ARTIC v1200 primers to genomes config for viralrecon	2021-07-12 14:03:29 +01:00
Harshil Patel	962dca7a46	Add ARTIC v1200 primers to genomes config for viralrecon	2021-07-12 12:24:49 +01:00
Gisela Gabernet	435955ab20	Merge pull request #256 from ggabernet/master ... Add AWS tower config	2021-07-03 16:54:59 +02:00
ggabernet	e6f1bfaa1a	finally add profile	2021-07-03 15:13:10 +02:00
ggabernet	68e12f85ec	fix cchecker	2021-07-03 15:11:51 +02:00
ggabernet	2a69b90be6	fix cchecker	2021-07-03 15:09:43 +02:00
ggabernet	6475671c38	test that it fails	2021-07-03 14:57:58 +02:00
ggabernet	926f3ba24f	update checker script	2021-07-03 14:52:44 +02:00
ggabernet	79fffbd77f	update changes	2021-07-03 14:39:17 +02:00
ggabernet	f3274c49b5	test profile multiline	2021-07-03 14:36:56 +02:00