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731 commits

Author SHA1 Message Date
lecorguille
23ba1c58b1 Add ABiMS - NXF_SINGULARITY_CACHEDIR 2020-10-23 00:11:58 +02:00
lecorguille
90d1f9072b Add ABiMS - autoMounts = false 2020-10-22 18:18:55 +02:00
lecorguille
f21d16b24f Add ABiMS - fix lint 2020-10-22 17:47:25 +02:00
lecorguille
a63ca751ee Add ABiMS 2020-10-22 16:57:41 +02:00
James A. Fellows Yates
804f53c58c
Merge pull request #178 from jfy133/master
Add Max Planck Computing and Data Facility Cobra/Raven Clusters
2020-10-22 13:34:11 +02:00
James A. Fellows Yates
7088ed196f
Update mpcdf.md 2020-10-22 11:08:29 +02:00
James A. Fellows Yates
3995057d7f
Update mpcdf.config 2020-10-22 10:42:46 +02:00
James A. Fellows Yates
0d6e269322
Update mpcdf.md 2020-10-15 14:24:08 +02:00
James A. Fellows Yates
05deeca2d6
Update mpcdf.config 2020-10-15 14:22:35 +02:00
James A. Fellows Yates
2c2d23ac26
Merge pull request #181 from nf-core/shh-patch
Update SHH profile to reduce number of parallel jobs
2020-09-29 14:24:12 +02:00
James A. Fellows Yates
e26c22b2f1
Update shh.config 2020-09-29 14:03:35 +02:00
Johannes Alneberg
59cd8d69ed
Merge pull request #180 from MaxUlysse/rackham
Rackham
2020-09-29 10:31:04 +02:00
MaxUlysse
2ccbdd3367 update params to latest version 2020-09-28 13:59:42 +02:00
MaxUlysse
8c0cc4b9ec code polishing 2020-09-25 09:57:50 +02:00
MaxUlysse
81f910cc95 add specific BamQC config 2020-09-25 09:49:43 +02:00
MaxUlysse
fbe7bd133a update uppmax specific sarek config 2020-09-25 08:33:53 +02:00
James A. Fellows Yates
11f1fb71db
Update mpcdf.config 2020-09-16 10:21:58 +02:00
James A. Fellows Yates
bbbdd3cb0f
Update mpcdf.config 2020-09-16 10:21:42 +02:00
James A. Fellows Yates
5b3492d240
Update mpcdf.config 2020-09-16 10:21:26 +02:00
James A. Fellows Yates
3115963b3e
Update mpcdf.config 2020-09-15 19:53:27 +02:00
James A. Fellows Yates
c6f7573d01
Update mpcdf.config 2020-09-15 17:48:54 +02:00
James A. Fellows Yates
bf87ec24e7
Update mpcdf.config 2020-09-15 17:45:38 +02:00
Edmund Miller
87c757dc47
Merge pull request #179 from Emiller88/utd
feat: add Kim queue
2020-09-14 10:28:43 -05:00
Edmund Miller
2c06019d89
fix(utd): Add check for less than 12 cpu 2020-09-13 20:46:14 -05:00
Edmund Miller
dc2735207e
feat(utd): add Kim queue 2020-09-13 20:46:10 -05:00
James A. Fellows Yates
3b7902d11b
Mad multi-core increase CPUs on retry 2020-09-06 08:23:35 +02:00
James A. Fellows Yates
4335e5deb7
Update mpcdf.config 2020-09-04 20:17:09 +02:00
James A. Fellows Yates
af8d25ed09
Update main.yml 2020-09-04 20:14:35 +02:00
James A. Fellows Yates
4f991d2c0c
Update eager.config 2020-09-04 19:59:27 +02:00
James A. Fellows Yates
b4e275c3b9
Add MPCDF for EAGER 2020-09-04 19:57:25 +02:00
James A. Fellows Yates
5c7ab234b6
Create mpcdf.config 2020-09-04 19:55:40 +02:00
James A. Fellows Yates
65fce5c2a5
Update nfcore_custom.config 2020-09-04 19:52:46 +02:00
James A. Fellows Yates
9df85be081
Update mpcdf.md 2020-09-03 20:27:15 +02:00
James A. Fellows Yates
09cd5cad65
Update mpcdf.md 2020-09-03 20:25:37 +02:00
James A. Fellows Yates
0a685c1cc2
Update mpcdf.config 2020-09-03 20:24:11 +02:00
James A. Fellows Yates
a1c5dc5fde
Update README.md 2020-09-03 20:22:27 +02:00
James A. Fellows Yates
0501ae4c1a
Started docs for mpcdf 2020-09-03 20:21:49 +02:00
James A. Fellows Yates
42a1a15970
Create mpcdf.config 2020-09-03 20:11:56 +02:00
James A. Fellows Yates
6261add35e
Merge pull request #12 from nf-core/master
Merge pull request #176 from jfy133/master
2020-09-03 15:12:14 +02:00
James A. Fellows Yates
3d744d9aea
Merge pull request #176 from jfy133/master
Add new group profile for eager@SHH
2020-08-11 09:24:43 +02:00
James A. Fellows Yates
09cfabd37f
Add new microbiome_screening profile to docs 2020-08-11 09:20:31 +02:00
James A. Fellows Yates
c3fa87e4bc
Add microbiome screening profile for NT sized MALT runs for nf-core/eager@SHH 2020-08-11 09:18:36 +02:00
James A. Fellows Yates
de9f5ab560
Merge pull request #11 from nf-core/master
Get latest changes
2020-08-11 09:10:13 +02:00
Harshil Patel
69a660da3b
Merge pull request #175 from drpatelh/master
Remove loading of specific Singularity version
2020-08-03 11:46:21 +01:00
drpatelh
165af5122f Update docs 2020-08-03 11:39:23 +01:00
drpatelh
b804076959 Remove hard Singularity version 2020-08-03 11:38:10 +01:00
Alexander Peltzer
11f6107922
Merge pull request #174 from maxibor/master
Add temporary CDAG setting for SHH config
2020-07-23 16:09:28 +02:00
maxibor
69a0bd572b add temporary CDAG setting for SHH config 2020-07-23 15:38:28 +02:00
James A. Fellows Yates
d38ffc289b
Merge pull request #173 from jfy133/shh-eager-hops-update
Remove now deprecated EAGER flag for HOPS profile
2020-07-20 11:34:49 +02:00
James A. Fellows Yates
57ac9257a9
Remove now deprecated EAGER flag for HOPS profile 2020-07-20 11:29:12 +02:00