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Author	SHA1	Message	Date
James A. Fellows Yates	46f046d477	Update eva.config	2022-02-28 14:00:37 +01:00
James A. Fellows Yates	d7d9951dbf	Insert h_vmem for all nf-core pipelines	2022-02-28 14:00:16 +01:00
James Fellows Yates	88ddc9eee7	fffff	2022-02-10 11:34:57 +01:00
James Fellows Yates	d7d0f5cecc	Change base time	2022-02-10 11:32:49 +01:00
James Fellows Yates	dbd78f8075	Re add .	2022-02-10 11:26:18 +01:00
James Fellows Yates	dd94895f16	remove quotes	2022-02-10 11:22:45 +01:00
James Fellows Yates	39c2d9b25b	Oops	2022-02-10 11:19:16 +01:00
James Fellows Yates	c0ee3225ad	Add times for 365d	2022-02-10 11:02:52 +01:00
James A. Fellows Yates	192839c8be	Merge pull request #327 from nf-core/TCLamnidis-patch-2 ... Removed all time limits	2022-02-10 10:22:53 +01:00
Thiseas C. Lamnidis	fa4075c2a0	Removed all time limits	2022-02-10 10:00:18 +01:00
James A. Fellows Yates	64355b84d2	Merge pull request #325 from jfy133/eva-update ... Read add empty BAM exit code for qualimap 255 for eager @ EVA	2022-02-08 11:28:36 +01:00
James A. Fellows Yates	2b06293f64	Read add empty BAM exit code for qualitmap 255	2022-02-08 11:15:17 +01:00
James A. Fellows Yates	8d286e3b69	Merge pull request #324 from jfy133/eva-update ... New attempt of workaround SGE + Java incompatibility for eager @ EVA	2022-02-06 20:02:03 +01:00
James A. Fellows Yates	8c5a54ac9f	Update conf/pipeline/eager/eva.config	2022-02-06 19:37:53 +01:00
James A. Fellows Yates	aa525c6ebf	Allow exit code 1 retry for all java processes	2022-02-06 09:07:53 +01:00
Patrick Hüther	8ff6f302b4	Merge pull request #320 from rbpisupati/cbe-singularity ... cbe: update config and docs	2022-02-04 10:40:16 +01:00
phue	7bf6f284fa	cbe: lower the threshold for switching to m queue	2022-02-04 10:33:00 +01:00
phue	49810a69b3	cbe: add gpu support ... just in case.. note that this will need --nv in containerOptions in order to mount cuda libs into the container	2022-02-04 10:31:58 +01:00
phue	a6dd3aa0f1	cbe: update recommended nextflow version in docs ... otherwise, the new anaconda requirements will cause conflicts	2022-02-04 10:21:52 +01:00
phue	52b6f7da21	update anaconda module ... not sure why a binary distribution needs a buildenv at all, but well	2022-02-04 10:18:59 +01:00
phue	c3db683535	Merge branch 'master' of github.com:nf-core/configs into cbe-singularity	2022-02-04 10:14:52 +01:00
phue	b5ab4a8258	Revert "changes to cbe module loading" ... This reverts commit 7c1c4c7fa4.	2022-02-04 10:13:12 +01:00
James A. Fellows Yates	81fe720b00	Update eva.config	2022-02-04 09:31:33 +01:00
James A. Fellows Yates	86a9042eac	Update eva.config	2022-02-04 09:25:01 +01:00
James A. Fellows Yates	50aafc6410	Update eva.config	2022-02-03 17:03:10 +01:00
rbpisupati	7c1c4c7fa4	changes to cbe module loading	2022-02-02 22:42:13 +01:00
James A. Fellows Yates	8739aabbf0	Bump markduplicates by default	2022-02-02 08:00:13 +01:00
Harshil Patel	9792226f5c	Update genomes.config	2022-01-27 12:45:41 +00:00
Harshil Patel	c49abc2e61	Merge pull request #316 from drpatelh/nextclade ... Add --nextclade_dataset params	2022-01-17 17:35:31 +00:00
Harshil Patel	cd6b8e0f17	Add --nextclade_dataset params	2022-01-17 16:51:55 +00:00
Harshil Patel	a680207b55	Merge pull request #315 from drpatelh/nextclade ... Add Nextclade genome details to viralrecon genome config	2022-01-17 11:46:47 +00:00
Harshil Patel	f26c465bd4	Add Nextclade genome details to viralrecon genome config	2022-01-17 11:27:10 +00:00
James A. Fellows Yates	4546e0f389	Merge pull request #314 from jfy133/master ... Update eager@eva to add java buffer for bbduk	2022-01-14 07:40:56 +01:00
James A. Fellows Yates	5fd5c43906	Update eva.config	2022-01-14 07:03:05 +01:00
Maxime U. Garcia	61682f33b3	Merge pull request #310 from nf-core/praveenraj2018-patch-1 ... Updated sentieon version through a new module file	2022-01-10 12:04:20 +01:00
ameynert	bfa7e0f8d7	Merge pull request #313 from nf-core/ameynert-patch-1 ... Added memory & cluster options specification for eddie sarek config	2022-01-06 10:38:13 +00:00
ameynert	0f56588acc	Added memory & cluster options specification for eddie sarek config	2022-01-06 10:15:34 +00:00
praveenraj2018	53ab5ee34f	Updated sentieon version through a new module file ... A local module file has been created to run the latest version of Sentieon. Doing this change, as the new version of Sentieon has only a dependency library update, hence it should not break the Sentieon pipeline. Tested locally with a test.conf having the new process block.	2021-12-21 15:21:59 +01:00
Kevin Brick	1abb1c2d95	Merge pull request #309 from kevbrick/master ... Added config for NIH Biowulf Cluster	2021-12-20 13:05:19 -05:00
Kevin Brick	82c7d553a7	Update bind-paths	2021-12-20 11:29:09 -05:00
Kevin Brick	afb6fbb767	Trailing spaces	2021-12-17 00:46:50 -05:00
Kevin Brick	05f7b59573	Update nihbiowulf.md	2021-12-17 00:44:39 -05:00
Kevin Brick	74448de49e	Update main.yml ... add nihbiowulf	2021-12-17 00:40:43 -05:00
Kevin Brick	e523e28861	Update README.md	2021-12-17 00:39:21 -05:00
Kevin Brick	de6d3bdd5f	Update nfcore_custom.config	2021-12-17 00:38:07 -05:00
Kevin Brick	9cf4f69ff3	Add files via upload	2021-12-17 00:37:11 -05:00
Kevin Brick	87e4ece034	Add files via upload	2021-12-17 00:36:51 -05:00
Venkat Malladi	38295dfbbd	Merge pull request #308 from vsmalladi/master ... Fix name of Params	2021-12-16 14:11:53 -06:00
Venkat Malladi	306c802b4e	Fix name of Params	2021-12-16 09:27:23 -06:00
Maxime U. Garcia	58fe1a5808	Merge pull request #307 from nf-core/praveenraj2018-patch-1 ... Renamed star_index directory	2021-12-14 21:38:15 +01:00