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61 commits

Author SHA1 Message Date
marchoeppner
0830203b70 Adding new CCGA Med Cluster to profiles 
Updating README and fixing linting errors in CCGA_MED profile

Fixing order in profile queue and removed leading slash from readme for ccga profile docs

Fixing order in profile queue and removed leading slash from readme for ccga profile docs
 2020-02-11 11:12:51 +01:00
Maxime Garcia
9497b78149
Merge pull request #100 from MaxUlysse/UPPMAX 
Improve UPPMAX configs
 2019-12-06 10:52:44 +01:00
phue
fa777180e6 cbe: map hostname 2019-12-05 23:46:25 +01:00
Maxime Garcia
78826c9d4e
Merge branch 'master' into UPPMAX 2019-12-05 12:52:34 +01:00
jfy133
54dafbcfa3 Condensing SHH profiles following https://github.com/nf-core/configs/pull/100 2019-12-05 12:09:11 +01:00
MaxUlysse
a79dfdf223 remove uppmax_devel profile 2019-12-05 12:03:04 +01:00
James A. Fellows Yates
c725c71e4d
Merge branch 'master' into master 2019-11-26 20:34:42 +01:00
jfy133
e1c8c86d70 Updated core config 2019-11-26 20:26:59 +01:00
Alexander Peltzer
23f9fd2d73
Merge branch 'master' into master 2019-11-26 14:20:36 +01:00
Alexander Peltzer
9caf9821c9
Use strip 2019-11-26 14:04:58 +01:00
Alexander Peltzer
cb876594a3
Proper user tests now :-) 2019-11-26 13:57:32 +01:00
Noirot Céline
ed4436c1a6
Merge branch 'master' into master 2019-11-25 16:24:12 +01:00
noirot
42d968fd2a add genotoul in nfcore_custom 2019-11-25 16:23:25 +01:00
MaxUlysse
08a6b74825 add new profile to be shared: awsbatch 2019-11-19 14:16:06 +01:00
Alexander Peltzer
3b6c9d0360
Fix denbi docs 2019-11-11 12:28:45 +01:00
phue
5a9dbe5d7c MENDEL is no more 
the cluster is no longer operational, was replaced by CBE
 2019-10-28 14:11:34 +01:00
Anthony Bretaudeau
1f2786c78f add genouest cluster 2019-10-16 18:15:04 +02:00
phue
5e257e7e9a add cbe profile 2019-09-22 16:45:09 +02:00
Martin Proks
da2a9047b0
fix: added kraken to the list (#64) 2019-08-05 14:59:36 +02:00
drpatelh
e0c684ee8f Aarrrgh pulling configs from master 2019-07-31 23:39:42 +01:00
drpatelh
a692ded933 Remove workDir in czbiohub 2019-07-31 23:30:51 +01:00
drpatelh
7ee70fb742 Add in uppmax-devel 2019-07-31 22:52:20 +01:00
drpatelh
0326b56038 Add czbiohub back in 2019-07-31 22:48:22 +01:00
drpatelh
f3e61fdd66 Add prince back in 2019-07-31 22:40:43 +01:00
drpatelh
0f6802a7c8 Add hebbe back in 2019-07-31 22:37:11 +01:00
drpatelh
a496bfaeef Remove uppmax_devel 2019-07-31 22:33:49 +01:00
drpatelh
70919d0dd3 Remove more configs 2019-07-31 22:28:03 +01:00
drpatelh
8be2897961 Remove problematic configs 2019-07-31 22:27:37 +01:00
drpatelh
daf1b9dcd2 Fix type in uppmax-devel 2019-07-31 22:09:30 +01:00
drpatelh
840a97ed68 Clean up and alphabetasize 2019-07-31 21:52:16 +01:00
Remi Planel
1c0d596582 Merge remote-tracking branch 'upstream/master' 2019-07-30 16:15:20 +02:00
marchoeppner
b31db18dfb Adding config file for CCGA dx cluster 2019-07-29 12:08:07 +02:00
Remi Planel
1cb132a457 Define a profile for the Pasteur config 2019-07-24 11:32:25 +02:00
Olga Botvinnik
474e98daaf
Merge branch 'master' into olgabot/czb-update 2019-07-09 16:02:25 -07:00
Olga Botvinnik
069963ff8a Make czbiohub_aws_highpriority only set the AWS Batch queue and nothing else 2019-07-03 16:01:47 -07:00
Olga Botvinnik
6a2d2003f0 Add high priority AWS batch queue to CZBiohub AWS 2019-07-01 09:25:46 -07:00
Olga Botvinnik
cfcb533b95 Add czbiohub_aws to list of configs" 2019-06-25 19:02:49 -07:00
Olga Botvinnik
268e411d10 Add czbiohub_aws to list 2019-06-05 14:42:15 -07:00
Tobias Schraink
51c2a54399 added nyu prince and bigpurple configs 2019-04-17 16:59:38 -04:00
Harshil Patel
26c101a5ab
Alphabetical order 2019-03-13 16:53:30 +00:00
Harshil Patel
1843b2218c
Update nfcore_custom.config 2019-03-13 16:52:57 +00:00
Harshil Patel
857b0565c2
Update nfcore_custom.config 2019-03-13 16:51:45 +00:00
Phil Ewels
d0ca05a221 ; 2019-03-13 17:33:23 +01:00
Phil Ewels
1191863e1c Removed params.config_profile_name, added params.hostnames 2019-03-13 17:19:34 +01:00
Sven Fillinger
1dc523d726 Removes test config 2019-03-08 10:37:27 +01:00
Sven F
4e1cb46dc5
Update nfcore_custom.config 2019-03-06 20:22:45 +01:00
Sven F
23c05308de
Merge branch 'master' into dev 2019-03-06 19:54:32 +01:00
drpatelh
53d56310bb Added conf folder to paths 2019-03-06 18:14:45 +00:00
Sven Fillinger
638f986f34 Adds profile integration tests 2019-03-06 17:42:14 +01:00
Phil Ewels
6daf76f47d Hotfix for breaking pipelines that don't already support params.custom_config_base 2019-03-06 17:03:13 +01:00