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124 commits

Author SHA1 Message Date
James A. Fellows Yates
4804052b23
Update SHH nf-core/eager pipeline docs 2020-05-04 21:04:17 +02:00
James A. Fellows Yates
52214cc22d
Merge pull request #134 from marcel-keller/ebc 
adding Estonian Biocentre cluster profile
 2020-03-09 16:09:27 +01:00
marcel-keller
dcb478c904
Update ebc.md 2020-03-09 17:07:03 +02:00
marcel-keller
88cfe11187
Update ebc.md 2020-03-09 16:32:14 +02:00
marcel-keller
418f4b52b6
Create ebc.md 2020-03-09 16:23:16 +02:00
Alexander Peltzer
b8d020b78c
Update cfc.md 2020-03-09 15:12:49 +01:00
Evan Floden
6141e008a3
Update google.md 2020-03-09 14:44:58 +01:00
Evan Floden
d8ad376f71
Merge branch 'master' into master 2020-03-06 10:29:50 +00:00
Evan Floden
f5364e45e7
Update google.md or markdown linting 2020-03-06 11:27:44 +01:00
Alexander Peltzer
59a787b179
Merge pull request #122 from marchoeppner/ccga-config 
Removing old CCGA profile from docs and linting
 2020-03-06 11:17:08 +01:00
mseybold
2135996b13
Update cfc.md 2020-03-06 11:12:21 +01:00
Evan Floden
87e8da61a4 Readme formatting 2020-03-06 05:58:59 +00:00
Evan Floden
8a9d3ad8a0 First commit of Google Cloud config 2020-03-06 05:47:29 +00:00
Marc Hoeppner
6c5a5c8bcb Removing old CCGA profile from docs and linting 
Removing CCGA profile from master config

Removing CCGA profile from master config
 2020-02-24 12:16:33 +01:00
Maxime Garcia
08e2804b37
Merge branch 'master' into Uppmax 2020-02-20 17:18:46 +01:00
MaxUlysse
aa905cd645 add UPPMAX specific sarek config 2020-02-20 17:14:18 +01:00
marchoeppner
0830203b70 Adding new CCGA Med Cluster to profiles 
Updating README and fixing linting errors in CCGA_MED profile

Fixing order in profile queue and removed leading slash from readme for ccga profile docs

Fixing order in profile queue and removed leading slash from readme for ccga profile docs
 2020-02-11 11:12:51 +01:00
James A. Fellows Yates
799f2d5788
Grammar tweak 2019-12-21 20:59:48 +01:00
James A. Fellows Yates
435a5892ea
Updated docs corresponding to 638758423a 2019-12-21 20:59:25 +01:00
drpatelh
bcb8950c2f Change URL to website 2019-12-18 10:57:12 +00:00
drpatelh
be5ed21269 Update docs 2019-12-18 10:54:31 +00:00
drpatelh
0779d25255 Update docs 2019-12-12 13:02:51 +00:00
Alexander Peltzer
a6d08ed646
Adjust custom pipeline config for ampliseq on BINAC 2019-12-11 16:09:44 +01:00
Maxime Garcia
9497b78149
Merge pull request #100 from MaxUlysse/UPPMAX 
Improve UPPMAX configs
 2019-12-06 10:52:44 +01:00
Maxime Garcia
79528de92f
Update docs/uppmax.md 
Co-Authored-By: Phil Ewels <phil.ewels@scilifelab.se>
 2019-12-06 10:47:09 +01:00
jfy133
1650080b6e Linting 2019-12-05 17:03:07 +01:00
jfy133
731372dac2 Added SHH specific EAGER configuration 2019-12-05 17:01:10 +01:00
MaxUlysse
a63ec24626 Merge branch 'UPPMAX' of github.com:MaxUlysse/nf-core_configs into UPPMAX 2019-12-05 15:18:04 +01:00
MaxUlysse
99afe86ea9 update docs 2019-12-05 15:18:01 +01:00
Maxime Garcia
78826c9d4e
Merge branch 'master' into UPPMAX 2019-12-05 12:52:34 +01:00
Alexander Peltzer
9cdb915efb
Merge pull request #101 from jfy133/master 
Condensing SHH profile(s) with sub-profiles
 2019-12-05 12:51:31 +01:00
jfy133
54dafbcfa3 Condensing SHH profiles following https://github.com/nf-core/configs/pull/100 2019-12-05 12:09:11 +01:00
MaxUlysse
cdbdbee0eb replace -profile uppmax_devel by -profile uppmax,devel 2019-12-05 11:49:44 +01:00
Maxime Garcia
2669401a72
Merge branch 'master' into sarek 2019-11-27 13:27:43 +01:00
James A. Fellows Yates
c725c71e4d
Merge branch 'master' into master 2019-11-26 20:34:42 +01:00
jfy133
6f40c13473 Split shh config for each cluster 2019-11-26 20:20:17 +01:00
phue
672f025639 cbe: add documentation about iGenomes 2019-11-26 18:09:20 +01:00
Alexander Peltzer
81739a3907
Merge pull request #93 from jfy133/master 
Updated max resources for SHH SDAG
 2019-11-26 15:56:39 +01:00
James A. Fellows Yates
89506a653c
Remove empty lines in block quotes for linting 2019-11-26 15:34:25 +01:00
James A. Fellows Yates
12ec22838c
Specified max sources currently at SDAG limits (exceeds cdag) 2019-11-26 15:29:03 +01:00
noirot
07b1f17d6a correct md to pass linter 2019-11-26 15:02:06 +01:00
Noirot Céline
3ed206b7a7
Update docs/genotoul.md 
ok

Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2019-11-26 14:52:45 +01:00
Noirot Céline
288294994e
Update docs/genotoul.md 
ok

Co-Authored-By: Maxime Garcia <maxime.garcia@scilifelab.se>
 2019-11-26 14:52:32 +01:00
noirot
e95196451f correct md to pass linter 2019-11-26 14:47:23 +01:00
noirot
42c949db95 correct md to pass linter 2019-11-26 14:43:42 +01:00
Alexander Peltzer
23f9fd2d73
Merge branch 'master' into master 2019-11-26 14:20:36 +01:00
Noirot Céline
42d99e7006
Update genotoul.md 2019-11-26 13:18:34 +01:00
Maxime Garcia
f6c2e4c65f Update docs/pipeline/sarek/munin.md 
Update conf/pipeline/sarek/munin.config

testing out module and containers collision
 2019-11-26 11:57:51 +01:00
MaxUlysse
25d4e92935 update docs 2019-11-26 11:55:36 +01:00
Maxime Garcia
b029ccaa59 Update docs/pipeline/sarek/munin.md 
Update conf/pipeline/sarek/munin.config
 2019-11-26 11:48:11 +01:00