ameynert
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5224eb5574
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Updated resources folder & institute name
Local resources folder was re-organized & re-named BioinformaticsResources. Added note about viralrecon & atacseq pipeline-specific config. IGMM name-changed recently; updated to IGC.
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2021-07-21 12:15:17 +01:00 |
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ameynert
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4ceb369af5
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eddie.config for viralrecon pipeline
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2021-07-21 12:10:43 +01:00 |
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ameynert
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0da2c57784
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Merge pull request #4 from nf-core/master
Merge from nf-core/configs
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2021-07-21 12:09:32 +01:00 |
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Maxime U. Garcia
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47217cae5b
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Merge pull request #231 from maxulysse/master_kraken
Remove kraken profile
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2021-07-20 09:29:47 +02:00 |
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Maxime U. Garcia
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30e058abf0
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Merge branch 'master' into master_kraken
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2021-07-20 09:26:56 +02:00 |
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Harshil Patel
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836d3c4015
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Merge pull request #257 from drpatelh/V1200
Add ARTIC v1200 primers to genomes config for viralrecon
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2021-07-12 14:03:29 +01:00 |
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Harshil Patel
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962dca7a46
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Add ARTIC v1200 primers to genomes config for viralrecon
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2021-07-12 12:24:49 +01:00 |
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Gisela Gabernet
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435955ab20
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Merge pull request #256 from ggabernet/master
Add AWS tower config
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2021-07-03 16:54:59 +02:00 |
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ggabernet
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e6f1bfaa1a
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finally add profile
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2021-07-03 15:13:10 +02:00 |
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ggabernet
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68e12f85ec
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fix cchecker
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2021-07-03 15:11:51 +02:00 |
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ggabernet
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2a69b90be6
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fix cchecker
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2021-07-03 15:09:43 +02:00 |
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ggabernet
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6475671c38
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test that it fails
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2021-07-03 14:57:58 +02:00 |
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ggabernet
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926f3ba24f
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update checker script
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2021-07-03 14:52:44 +02:00 |
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ggabernet
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79fffbd77f
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update changes
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2021-07-03 14:39:17 +02:00 |
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ggabernet
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f3274c49b5
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test profile multiline
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2021-07-03 14:36:56 +02:00 |
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Gisela Gabernet
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e2088a008d
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Merge branch 'master' into master
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2021-07-03 12:24:42 +02:00 |
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ggabernet
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f8690d49e8
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add to tests
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2021-07-03 12:21:03 +02:00 |
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ggabernet
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ee2e8392ab
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add aws_tower profile
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2021-07-03 12:17:21 +02:00 |
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Harshil Patel
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69f63a006d
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Merge pull request #254 from drpatelh/articv4
Add ARTIC v4 primers to genomes config for viralrecon
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2021-07-01 12:31:02 +01:00 |
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Gisela Gabernet
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aae0f0bf07
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Merge pull request #255 from ggabernet/master
update cfc configs
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2021-07-01 10:59:25 +02:00 |
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ggabernet
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d59d099fe8
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remove load module in cfc configs
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2021-07-01 10:52:54 +02:00 |
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James A. Fellows Yates
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9298b353f5
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Merge pull request #253 from jfy133/eva
eager@EVA fixes more SGE + java silliness
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2021-06-29 12:53:34 +02:00 |
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James A. Fellows Yates
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5f4b915ae8
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Update eva.config
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2021-06-29 11:31:00 +02:00 |
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ameynert
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85c3f07f3c
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Merge pull request #3 from nf-core/master
Merge in from nf-core/configs
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2021-06-25 10:39:18 +01:00 |
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Harshil Patel
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93cfc48afd
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Add ARTIC v4 primers to genomes config
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2021-06-21 21:04:16 +01:00 |
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Edmund Miller
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3019035fdb
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Merge pull request #252 from Emiller88/utd_sysbio
Add UTD sysbio
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2021-06-17 14:36:30 +00:00 |
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Edmund Miller
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cb213a499c
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ci: Another missing comma
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2021-06-17 09:34:03 -05:00 |
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Edmund Miller
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5ad959a436
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fix(sysbio): Missing comma
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2021-06-17 09:18:45 -05:00 |
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Edmund Miller
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f9e4ec4a8d
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fix(sysbio): Add sysbio to rnaseq
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2021-06-17 09:18:45 -05:00 |
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Edmund Miller
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21e1037e0c
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docs(sysbio): Add rnaseq specific docs
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2021-06-17 09:18:45 -05:00 |
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Edmund Miller
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e35c5fd1d8
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fix(sysbio): Add nf-core params
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2021-06-17 08:32:31 -05:00 |
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Edmund Miller
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41ae99d34a
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feat(sysbio): Add cleanup
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2021-06-17 08:17:55 -05:00 |
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Edmund Miller
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87c8e346e0
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fix(sysbio): Change filetype
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2021-06-17 08:14:48 -05:00 |
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Edmund Miller
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14a2106c63
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fix(sysbio): Move rnaseq specific things to pipeline config
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2021-06-17 08:14:48 -05:00 |
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Edmund Miller
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7ff1c6cc7d
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ci: Add sysbio
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2021-06-16 21:19:49 -05:00 |
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Edmund Miller
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2a958f5ce3
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docs: Add sysbio
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2021-06-16 21:19:38 -05:00 |
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Edmund Miller
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472082254a
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fix(sysbio): Add Star resources
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2021-06-16 21:18:48 -05:00 |
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Edmund Miller
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b11f137901
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fix(sysbio): Leave igenomes unfinished
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2021-06-16 21:18:28 -05:00 |
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Edmund Miller
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04d0b27e81
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fix(sysbio): Reduce memory on high processes
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2021-06-16 21:17:40 -05:00 |
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Edmund Miller
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2b58a62a9b
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feat(utd): Add initial sysbio config
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2021-06-11 14:50:58 -05:00 |
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Gisela Gabernet
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9cca0eaf85
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Merge pull request #250 from ggabernet/master
cfc config
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2021-06-11 15:05:16 +02:00 |
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ggabernet
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c3385593cb
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revert cfc config
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2021-06-11 14:59:09 +02:00 |
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Gisela Gabernet
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1f45b9c297
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Merge pull request #249 from nf-core/mseybold-patch-1
Update cfc.config
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2021-06-11 14:42:37 +02:00 |
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mseybold
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f196de8246
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Update cfc.config
singularity is now installed natively on the nodes, so no more need for a module here
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2021-06-10 12:34:58 +02:00 |
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James A. Fellows Yates
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756f067213
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Merge pull request #248 from jfy133/eva
Fix MakeSeqDict eager @ eva
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2021-06-07 13:26:05 +02:00 |
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James A. Fellows Yates
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da8e002969
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Merge pull request #247 from jfy133/shh-fx
Fix eageR@SHH HOPS profile human ref path
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2021-06-07 10:55:01 +02:00 |
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James A. Fellows Yates
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fc8b1162c1
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Fix HOPS huamn ref path
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2021-06-07 10:48:35 +02:00 |
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James A. Fellows Yates
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5bf57894a5
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Merge pull request #246 from jfy133/shh-update
Make eager@SHH big_data go by default to medium via run time
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2021-06-04 12:32:28 +02:00 |
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James A. Fellows Yates
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31d46cb0a9
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Make big_data go by default to medium via run time
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2021-06-04 12:22:54 +02:00 |
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Øyvind Almelid
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c75ceec35d
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Merge pull request #244 from oalmelid/master
eddie.conf: Add TMPDIR and mount for it to singularity configuration + Migrate to BioinformaticsResources for genomes.
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2021-05-25 10:03:05 +01:00 |
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