SPearce
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5981b643c5
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Updated the sarek pipeline config
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2022-09-01 11:47:12 +01:00 |
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Simon Pearce
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2c738cae33
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Update crukmi.config
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2022-09-01 11:24:11 +01:00 |
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Simon Pearce
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a8faeda141
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Update crukmi.config
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2022-09-01 11:23:07 +01:00 |
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SPearce
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800931bff2
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Add Sarek specific config
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2022-09-01 11:13:23 +01:00 |
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Simon Pearce
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ba1d3f24cc
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Update crukmi.config
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2022-09-01 11:07:14 +01:00 |
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Simon Pearce
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897d0a188b
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Update nfcore_custom.config
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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2022-09-01 10:32:43 +01:00 |
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Simon Pearce
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df685f4f0f
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Merge branch 'master' into crukmi
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2022-09-01 10:29:08 +01:00 |
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James A. Fellows Yates
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3664b4812d
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Merge pull request #411 from nf-core/docs-improvement
Add documentation for when you need to use an environmental variable
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2022-09-01 11:24:31 +02:00 |
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Simon Pearce
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81768e16a9
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Merge branch 'nf-core:master' into crukmi
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2022-09-01 10:20:25 +01:00 |
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James A. Fellows Yates
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5769927bbc
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Merge branch 'master' into docs-improvement
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2022-09-01 11:15:10 +02:00 |
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Maxime U. Garcia
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ebcc3d278f
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Merge pull request #410 from nf-core/chear-var-fix
Fix cheaha config due to use of environmental variable
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2022-09-01 11:13:37 +02:00 |
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James Fellows Yates
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51f0359b3d
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Add documentation for when you need to use an environmental variable
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2022-09-01 11:12:15 +02:00 |
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Simon Pearce
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14a97ad0e8
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Merge branch 'master' into crukmi
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2022-09-01 10:07:24 +01:00 |
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James Fellows Yates
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b22e8b79c7
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Fix cheaha config due to use of environmental variable
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2022-09-01 11:01:23 +02:00 |
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ameynert
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69468e7ca7
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Merge pull request #409 from kalayaneech/master
A new profile for adcra [KMUTT]
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2022-09-01 09:55:12 +01:00 |
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ameynert
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28e59e38b4
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Run prettier
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2022-09-01 09:28:05 +01:00 |
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Kalayanee Chairat
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8e275182ea
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Update main.yml
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2022-09-01 15:16:56 +07:00 |
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Kalayanee Chairat
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bf2ab39ea0
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Update README.md
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2022-09-01 15:15:51 +07:00 |
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Kalayanee Chairat
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9681716205
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Update adcra.config
Fixing typo
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2022-09-01 15:11:18 +07:00 |
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Kalayanee Chairat
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700f14d828
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Merge pull request #1 from nf-core/master
Merging from master
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2022-09-01 15:07:43 +07:00 |
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Simon Pearce
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864da0b5be
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Merge branch 'master' into crukmi
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2022-08-31 18:19:47 +01:00 |
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SPearce
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1e1ca1e96b
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Incorporating executor options
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2022-08-31 15:35:57 +01:00 |
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Annick Renevey
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bfeafdbf25
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Merge pull request #408 from nf-core/rnafusion_config_hasta
rnafusion setup for hasta usage [WIP]
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2022-08-31 14:36:08 +02:00 |
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Annick Renevey
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242101db16
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fix extra space
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2022-08-31 14:26:32 +02:00 |
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Annick Renevey
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0851903f66
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include new config in pipeline configs file
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2022-08-31 14:19:07 +02:00 |
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Annick Renevey
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51871ea6fc
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rnafusion setup for hasta usage
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2022-08-31 11:32:01 +02:00 |
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Lara Ianov
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08b62ede83
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Merge pull request #404 from nf-core/cheaha_singularity_update
Cheaha Config Update
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2022-08-30 14:45:50 -05:00 |
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Austyn Trull
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90f638d376
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Updating the cheaha documentation to clarify that /data/temporary-scratch/atrull will be used as storage for files that would normally go into one of the temporary locations when using Singularity
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2022-08-29 10:47:46 -05:00 |
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James A. Fellows Yates
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b33aef1431
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Merge pull request #386 from andrewfrank/patch-2
Update google.config to fix custom VM memory error
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2022-08-29 08:30:39 +02:00 |
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James A. Fellows Yates
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c70a95f9c9
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Merge branch 'master' into patch-2
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2022-08-29 08:23:31 +02:00 |
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Harshil Patel
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84b0b705a2
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Merge pull request #405 from drpatelh/monkeypox
Replace NC_063383.1 fasta and gff and add Nextclade config
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2022-08-25 12:57:43 +01:00 |
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kalayaneech
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93c4ba67a0
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adding adcra configuration
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2022-08-25 16:17:09 +07:00 |
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Harshil Patel
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8b9661825b
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Replace NC_063383.1 fasta and gff and add Nextclade config
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2022-08-24 15:21:44 +01:00 |
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Harshil Patel
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d71e31c378
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Merge pull request #403 from drpatelh/monkeypox
Add monkeypox genome files to viralrecon genome config file
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2022-08-24 12:16:21 +01:00 |
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Harshil Patel
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8dcfcfd856
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Add monkeypox genome files to viralrecon genome config file
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2022-08-24 12:13:17 +01:00 |
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Austyn Trull
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8d5ae4c3ab
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Committing changes made by Brandon Wilk so that singularity containers will use scratch space
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2022-08-23 15:30:13 -05:00 |
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Ramprasad Neethiraj
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49c71e0c28
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Merge pull request #363 from ramprasadn/feat/hasta_update
Add a profile for stubruns in hasta
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2022-08-23 22:14:18 +02:00 |
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Ramprasad Neethiraj
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9182b55acc
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Merge branch 'master' into feat/hasta_update
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2022-08-23 11:21:58 +02:00 |
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Anders Jemt
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9c26cfddaa
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Merge pull request #390 from raysloks/feat/hasta_java_memory_fix
Feat/hasta java memory fix
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2022-08-22 15:46:39 +02:00 |
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Ramprasad Neethiraj
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7ff2977a29
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Merge branch 'master' of github.com:nf-core/configs into feat/hasta_update
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2022-08-18 15:58:56 +02:00 |
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Ramprasad Neethiraj
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dd63dee7aa
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update conf
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2022-08-18 15:56:41 +02:00 |
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Ramprasad Neethiraj
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1c942759ea
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update sentieon
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2022-08-18 15:52:31 +02:00 |
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Ramprasad Neethiraj
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a6cce4ab6a
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Merge branch 'master' into feat/hasta_java_memory_fix
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2022-08-18 13:36:08 +02:00 |
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Phil Ewels
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ea89504bc7
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Merge pull request #397 from ErikDanielsson/add-citation-cff
Add `CITATION.cff` for the nf-core publication
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2022-08-18 09:27:08 +02:00 |
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SPearce
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8ae3cba5e3
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Reduce MPILEUP to 5GB
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2022-08-15 11:35:59 +01:00 |
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SPearce
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d0662a3acb
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Ran prettier
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2022-08-15 09:33:30 +01:00 |
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SPearce
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a97b887d93
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Written a help file
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2022-08-12 16:57:04 +01:00 |
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SPearce
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0bfedde296
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Initial attempt at a CRUKMI config file
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2022-08-12 15:43:22 +01:00 |
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Gwenna Breton
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99df08f409
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Merge pull request #395 from ClinicalGenomicsGBG/medair
New config: Add config for Medair
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2022-08-09 11:03:56 +02:00 |
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Gwenna Breton
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0e4f2b40d3
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Added email of IT group
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2022-08-08 16:14:17 +02:00 |
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