Lewis Quayle
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755862fc61
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Merge branch 'nf-core:master' into sbc_sharc
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2022-10-05 19:55:43 +01:00 |
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Giuseppe Martone
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64fec62a6d
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Merge branch 'master' into master
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2022-10-04 22:59:17 +02:00 |
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Giuseppe Martone
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e37bccc9d8
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Update tigem.config
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2022-10-04 22:58:50 +02:00 |
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Alexander Peltzer
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a9781042c7
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Merge pull request #392 from nf-core/custom-mag-eva
Fix python related seg faults mag@eva
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2022-10-04 21:58:49 +02:00 |
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Alexander Peltzer
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0d8471a082
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Merge pull request #421 from Puumanamana/master
University of Hawaii at Manoa's HPCC config
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2022-10-04 21:56:40 +02:00 |
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Alexander Peltzer
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8b68ffce89
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Merge branch 'master' into custom-mag-eva
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2022-10-04 21:55:37 +02:00 |
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Phil Ewels
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e78d941105
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Merge branch 'master' into ccga_beegfs_update
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2022-10-04 14:18:51 +02:00 |
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Marc Hoeppner
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e5b798e21f
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Updating CCGA med to use the new Beegfs file system
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2022-10-04 14:07:44 +02:00 |
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Giuseppe Martone
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ce39096f32
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Create tigem.config
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2022-10-04 10:44:19 +02:00 |
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lquayle88
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584052cfff
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Revised base and all pipeline configs to provide memory on per core basis
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2022-10-04 09:12:29 +01:00 |
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lquayle88
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3f2ffa314d
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Revised base and sarek configs to provide memory on per core basis
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2022-10-04 00:25:16 +01:00 |
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Cedric
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d429a59a0d
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add automounts for singularity
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2022-10-02 18:44:22 -10:00 |
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Cedric Arisdakessian
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c479780d8f
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create mana config
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2022-10-03 03:38:20 +00:00 |
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lquayle88
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e7ac3ecd19
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Modified resource requests in sbc_sharc.config for sarek
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2022-10-02 00:24:39 +01:00 |
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lquayle88
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9b451b53b7
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Increased cpus and memory for GATK4_MARKDUPLICATES in sbc_sharc.config for sarek
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2022-10-01 23:31:51 +01:00 |
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lquayle88
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10c1490265
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Increased memory and time for GATK4_MARKDUPLICATES in sbc_sharc.config for sarek
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2022-10-01 23:15:13 +01:00 |
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lquayle88
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dbb3b3b44b
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Reinstated maxRetries and increased memory for GATK4_MARKDUPLICATES in sbc_sharc.config for sarek
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2022-10-01 07:45:28 +01:00 |
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lquayle88
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8103718389
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Reduced maxRetries upon error in sbc_sharc.config for sarek
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2022-09-30 16:54:48 +01:00 |
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Lewis Quayle
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1eea9b464a
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Merge branch 'nf-core:master' into sbc_sharc
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2022-09-28 10:49:05 +01:00 |
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Bruno Grande
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735df9ef76
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Merge branch 'master' into bgrande/sage-improve-downloads
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2022-09-26 10:22:27 -07:00 |
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Patrick Hüther
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51ae760889
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Merge pull request #413 from phue/biohpc_charliecloud_patch
biohpc_gen: update required modules
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2022-09-25 23:28:04 +02:00 |
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Lewis Quayle
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e89114df8d
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Merge branch 'nf-core:master' into sbc_sharc
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2022-09-23 17:02:29 +01:00 |
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lquayle88
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c42a5a9a94
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Updated resources requested by pipelines
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2022-09-23 17:01:58 +01:00 |
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lquayle88
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ab1ad832df
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Updated resource requests for compatibility with high memory nodes
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2022-09-23 13:18:50 +01:00 |
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Simon Pearce
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17c3767fef
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Update crukmi.config
Fix the singularity cache dir and add process_single.
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2022-09-23 12:53:54 +01:00 |
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Lewis Quayle
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7541ffb666
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Merge branch 'nf-core:master' into sbc_sharc
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2022-09-23 11:09:28 +01:00 |
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lquayle88
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7e34beb3c9
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Updated resource requests for compatibility with general worker nodes
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2022-09-23 11:08:39 +01:00 |
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Adrija Kalvisa
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7959b14385
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Merge branch 'nf-core:master' into master
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2022-09-22 13:15:32 +02:00 |
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Austyn Trull
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5400df135d
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Merge pull request #412 from nf-core/cheaha_env_variable_updates
Fix cheaha config due to use of incorrect variable
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2022-09-21 13:38:24 -05:00 |
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lquayle88
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1471257aaf
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Modified config for job submit rate
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2022-09-20 19:51:31 +01:00 |
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Lewis Quayle
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9ee0bdc580
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Merge branch 'nf-core:master' into sbc_sharc
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2022-09-19 16:36:04 +01:00 |
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lquayle88
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adc88cfa1f
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Added config for limiting queue size and job submit rate
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2022-09-19 16:30:30 +01:00 |
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Patrick Hüther
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85aa6adeed
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Merge branch 'master' into biohpc_charliecloud_patch
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2022-09-18 12:52:33 +02:00 |
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ggabernet
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c709be3b59
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update cfc config maintenance
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2022-09-18 12:06:37 +02:00 |
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Bruno Grande
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8bb9361359
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Improve reliability of file transfers
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2022-09-17 10:14:04 -07:00 |
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lquayle88
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55971bb94d
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Modularised error handling strategy to per pipeline basis
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2022-09-16 17:29:08 +01:00 |
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James A. Fellows Yates
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ec638e62de
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Apply suggestions from code review
Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
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2022-09-15 09:10:29 +02:00 |
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James A. Fellows Yates
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b8751af6c6
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Update conf/pipeline/mag/eva.config
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2022-09-14 16:17:17 +02:00 |
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James Fellows Yates
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c0effc0366
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Add HKI profile files
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2022-09-14 15:34:27 +02:00 |
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James A. Fellows Yates
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8ea01e2041
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Merge branch 'nf-core:master' into master
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2022-09-14 15:01:34 +02:00 |
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James A. Fellows Yates
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3fcf708134
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Merge pull request #414 from sheffield-bioinformatics-core/sbc_sharc
Added global institutional and pipeline configs for sbc_sharc
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2022-09-14 11:46:41 +02:00 |
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lquayle88
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91bfa7341f
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Made changes requested for PR
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2022-09-14 08:42:40 +01:00 |
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Bruno Grande
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3d3ee391be
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Limit the number of parallel transfers
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2022-09-13 13:15:30 -07:00 |
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lquayle88
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9fef35d7d3
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Updated pipeline configs for atacseq and chipseq
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2022-09-13 17:08:56 +01:00 |
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lquayle88
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a9b62c53e0
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Added global institutional and pipeline configs for sbc_sharc
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2022-09-13 17:02:44 +01:00 |
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Bruno Grande
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abae5c4bd8
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Decrease AWS Batch queue size
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2022-09-12 11:40:43 -07:00 |
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phue
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b20f28a3c9
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biohpc_gen: load charliecloud from lrz software tree and remove conda fallback
the biohpc_gen specific software tree is less maintained and outdated
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2022-09-05 11:25:33 +02:00 |
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Bruno Grande
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80831358f9
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Merge branch 'master' into bgrande/sage-aws
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2022-09-01 13:21:36 -07:00 |
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Lara Ianov
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8448bb9a1e
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re-define TMPDIR
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2022-09-01 10:12:07 -05:00 |
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Simon Pearce
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2c738cae33
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Update crukmi.config
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2022-09-01 11:24:11 +01:00 |
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