Lewis Quayle
|
755862fc61
|
Merge branch 'nf-core:master' into sbc_sharc
|
2022-10-05 19:55:43 +01:00 |
|
Alexander Peltzer
|
540add8238
|
Merge pull request #422 from giusmar/master
Add TIGEM config file
|
2022-10-05 16:40:24 +02:00 |
|
Alexander Peltzer
|
e2146b5905
|
Update docs/tigem.md
|
2022-10-05 09:59:07 +02:00 |
|
Giuseppe Martone
|
64fec62a6d
|
Merge branch 'master' into master
|
2022-10-04 22:59:17 +02:00 |
|
Giuseppe Martone
|
e37bccc9d8
|
Update tigem.config
|
2022-10-04 22:58:50 +02:00 |
|
Giuseppe Martone
|
baf857654c
|
Update tigem.md
|
2022-10-04 22:28:38 +02:00 |
|
Alexander Peltzer
|
a9781042c7
|
Merge pull request #392 from nf-core/custom-mag-eva
Fix python related seg faults mag@eva
|
2022-10-04 21:58:49 +02:00 |
|
Alexander Peltzer
|
0d8471a082
|
Merge pull request #421 from Puumanamana/master
University of Hawaii at Manoa's HPCC config
|
2022-10-04 21:56:40 +02:00 |
|
Alexander Peltzer
|
8b68ffce89
|
Merge branch 'master' into custom-mag-eva
|
2022-10-04 21:55:37 +02:00 |
|
nf-core-bot
|
cade84aacd
|
[automated] Fix linting with Prettier
|
2022-10-04 19:50:51 +00:00 |
|
Phil Ewels
|
7556391c97
|
Merge pull request #423 from marchoeppner/ccga_beegfs_update
Updating CCGA med to use the new Beegfs file system
|
2022-10-04 14:31:19 +02:00 |
|
Phil Ewels
|
e78d941105
|
Merge branch 'master' into ccga_beegfs_update
|
2022-10-04 14:18:51 +02:00 |
|
Marc Hoeppner
|
e5b798e21f
|
Updating CCGA med to use the new Beegfs file system
|
2022-10-04 14:07:44 +02:00 |
|
Giuseppe Martone
|
5758687a09
|
Update main.yml
|
2022-10-04 11:07:36 +02:00 |
|
Giuseppe Martone
|
a4244eb346
|
Update README.md
|
2022-10-04 11:06:26 +02:00 |
|
Giuseppe Martone
|
bde7502ed2
|
Update nfcore_custom.config
|
2022-10-04 10:54:13 +02:00 |
|
Giuseppe Martone
|
2479c1e7e8
|
Update tigem.md
|
2022-10-04 10:53:27 +02:00 |
|
Giuseppe Martone
|
da0482a904
|
Create tigem.md
|
2022-10-04 10:52:50 +02:00 |
|
Giuseppe Martone
|
ce39096f32
|
Create tigem.config
|
2022-10-04 10:44:19 +02:00 |
|
lquayle88
|
584052cfff
|
Revised base and all pipeline configs to provide memory on per core basis
|
2022-10-04 09:12:29 +01:00 |
|
lquayle88
|
3f2ffa314d
|
Revised base and sarek configs to provide memory on per core basis
|
2022-10-04 00:25:16 +01:00 |
|
Cedric
|
2825f33ded
|
conda env setup improvement
|
2022-10-02 19:15:59 -10:00 |
|
Cedric
|
d429a59a0d
|
add automounts for singularity
|
2022-10-02 18:44:22 -10:00 |
|
Cedric Arisdakessian
|
e89cb7bd5e
|
fix indentation
|
2022-10-03 03:49:04 +00:00 |
|
Cedric Arisdakessian
|
3b8b170203
|
added mana in gh actions
|
2022-10-03 03:47:03 +00:00 |
|
Cedric Arisdakessian
|
9cc679c811
|
fix mana name
|
2022-10-03 03:43:51 +00:00 |
|
Cedric Arisdakessian
|
7b1e360a35
|
added mana
|
2022-10-03 03:42:07 +00:00 |
|
Cedric Arisdakessian
|
9b710a07f5
|
add mana config
|
2022-10-03 03:41:23 +00:00 |
|
Cedric Arisdakessian
|
32cdea4b59
|
documentation for mana config
|
2022-10-03 03:38:48 +00:00 |
|
Cedric Arisdakessian
|
c479780d8f
|
create mana config
|
2022-10-03 03:38:20 +00:00 |
|
lquayle88
|
e7ac3ecd19
|
Modified resource requests in sbc_sharc.config for sarek
|
2022-10-02 00:24:39 +01:00 |
|
lquayle88
|
9b451b53b7
|
Increased cpus and memory for GATK4_MARKDUPLICATES in sbc_sharc.config for sarek
|
2022-10-01 23:31:51 +01:00 |
|
lquayle88
|
10c1490265
|
Increased memory and time for GATK4_MARKDUPLICATES in sbc_sharc.config for sarek
|
2022-10-01 23:15:13 +01:00 |
|
lquayle88
|
dbb3b3b44b
|
Reinstated maxRetries and increased memory for GATK4_MARKDUPLICATES in sbc_sharc.config for sarek
|
2022-10-01 07:45:28 +01:00 |
|
lquayle88
|
8103718389
|
Reduced maxRetries upon error in sbc_sharc.config for sarek
|
2022-09-30 16:54:48 +01:00 |
|
Lewis Quayle
|
1eea9b464a
|
Merge branch 'nf-core:master' into sbc_sharc
|
2022-09-28 10:49:05 +01:00 |
|
Bruno Grande
|
57f63add02
|
Merge pull request #417 from Sage-Bionetworks-Workflows/bgrande/sage-improve-downloads
Improve reliability of file transfers with retries and reduced concurrency
|
2022-09-26 10:24:14 -07:00 |
|
Bruno Grande
|
735df9ef76
|
Merge branch 'master' into bgrande/sage-improve-downloads
|
2022-09-26 10:22:27 -07:00 |
|
Patrick Hüther
|
51ae760889
|
Merge pull request #413 from phue/biohpc_charliecloud_patch
biohpc_gen: update required modules
|
2022-09-25 23:28:04 +02:00 |
|
Lewis Quayle
|
e89114df8d
|
Merge branch 'nf-core:master' into sbc_sharc
|
2022-09-23 17:02:29 +01:00 |
|
lquayle88
|
c42a5a9a94
|
Updated resources requested by pipelines
|
2022-09-23 17:01:58 +01:00 |
|
James A. Fellows Yates
|
2b1141e9c9
|
Merge pull request #420 from SPPearce/crukmi
Update crukmi.config
|
2022-09-23 15:14:43 +02:00 |
|
lquayle88
|
ab1ad832df
|
Updated resource requests for compatibility with high memory nodes
|
2022-09-23 13:18:50 +01:00 |
|
Simon Pearce
|
17c3767fef
|
Update crukmi.config
Fix the singularity cache dir and add process_single.
|
2022-09-23 12:53:54 +01:00 |
|
Lewis Quayle
|
7541ffb666
|
Merge branch 'nf-core:master' into sbc_sharc
|
2022-09-23 11:09:28 +01:00 |
|
lquayle88
|
7e34beb3c9
|
Updated resource requests for compatibility with general worker nodes
|
2022-09-23 11:08:39 +01:00 |
|
Martin Proks
|
0d4ecaeb6d
|
Merge pull request #419 from AdrijaK/master
add config for KU_SUND_DANGPU
|
2022-09-23 10:29:00 +02:00 |
|
AdrijaK
|
798d845a0d
|
run prettier
|
2022-09-22 14:21:02 +02:00 |
|
Adrija Kalvisa
|
65b6bf7c62
|
add ku_sund_dangpu
|
2022-09-22 13:37:45 +02:00 |
|
Adrija Kalvisa
|
339a072884
|
fix typo
|
2022-09-22 13:35:42 +02:00 |
|