116 commits

Author	SHA1	Message	Date
Alexander Peltzer	59a787b179	Merge pull request #122 from marchoeppner/ccga-config ... Removing old CCGA profile from docs and linting	2020-03-06 11:17:08 +01:00
Evan Floden	8a9d3ad8a0	First commit of Google Cloud config	2020-03-06 05:47:29 +00:00
Adrian Larkeryd	02d8b81af4	adding icr_davros as profiles	2020-03-04 16:02:11 +00:00
Phil Ewels	46b08c82e2	Remove params.custom_config_base from nf-core/configs	2020-02-27 11:53:38 +01:00
Marc Hoeppner	6c5a5c8bcb	Removing old CCGA profile from docs and linting ... Removing CCGA profile from master config Removing CCGA profile from master config	2020-02-24 12:16:33 +01:00
marchoeppner	0830203b70	Adding new CCGA Med Cluster to profiles ... Updating README and fixing linting errors in CCGA_MED profile Fixing order in profile queue and removed leading slash from readme for ccga profile docs Fixing order in profile queue and removed leading slash from readme for ccga profile docs	2020-02-11 11:12:51 +01:00
Maxime Garcia	9497b78149	Merge pull request #100 from MaxUlysse/UPPMAX ... Improve UPPMAX configs	2019-12-06 10:52:44 +01:00
phue	fa777180e6	cbe: map hostname	2019-12-05 23:46:25 +01:00
Maxime Garcia	78826c9d4e	Merge branch 'master' into UPPMAX	2019-12-05 12:52:34 +01:00
jfy133	54dafbcfa3	Condensing SHH profiles following https://github.com/nf-core/configs/pull/100	2019-12-05 12:09:11 +01:00
MaxUlysse	a79dfdf223	remove uppmax_devel profile	2019-12-05 12:03:04 +01:00
James A. Fellows Yates	c725c71e4d	Merge branch 'master' into master	2019-11-26 20:34:42 +01:00
jfy133	e1c8c86d70	Updated core config	2019-11-26 20:26:59 +01:00
Alexander Peltzer	23f9fd2d73	Merge branch 'master' into master	2019-11-26 14:20:36 +01:00
Alexander Peltzer	9caf9821c9	Use strip	2019-11-26 14:04:58 +01:00
Alexander Peltzer	cb876594a3	Proper user tests now :-)	2019-11-26 13:57:32 +01:00
Noirot Céline	ed4436c1a6	Merge branch 'master' into master	2019-11-25 16:24:12 +01:00
noirot	42d968fd2a	add genotoul in nfcore_custom	2019-11-25 16:23:25 +01:00
MaxUlysse	08a6b74825	add new profile to be shared: awsbatch	2019-11-19 14:16:06 +01:00
Alexander Peltzer	3b6c9d0360	Fix denbi docs	2019-11-11 12:28:45 +01:00
phue	5a9dbe5d7c	MENDEL is no more ... the cluster is no longer operational, was replaced by CBE	2019-10-28 14:11:34 +01:00
Anthony Bretaudeau	1f2786c78f	add genouest cluster	2019-10-16 18:15:04 +02:00
phue	5e257e7e9a	add cbe profile	2019-09-22 16:45:09 +02:00
Martin Proks	da2a9047b0	fix: added kraken to the list (#64)	2019-08-05 14:59:36 +02:00
drpatelh	e0c684ee8f	Aarrrgh pulling configs from master	2019-07-31 23:39:42 +01:00
drpatelh	a692ded933	Remove workDir in czbiohub	2019-07-31 23:30:51 +01:00
drpatelh	7ee70fb742	Add in uppmax-devel	2019-07-31 22:52:20 +01:00
drpatelh	0326b56038	Add czbiohub back in	2019-07-31 22:48:22 +01:00
drpatelh	f3e61fdd66	Add prince back in	2019-07-31 22:40:43 +01:00
drpatelh	0f6802a7c8	Add hebbe back in	2019-07-31 22:37:11 +01:00
drpatelh	a496bfaeef	Remove uppmax_devel	2019-07-31 22:33:49 +01:00
drpatelh	70919d0dd3	Remove more configs	2019-07-31 22:28:03 +01:00
drpatelh	8be2897961	Remove problematic configs	2019-07-31 22:27:37 +01:00
drpatelh	daf1b9dcd2	Fix type in uppmax-devel	2019-07-31 22:09:30 +01:00
drpatelh	840a97ed68	Clean up and alphabetasize	2019-07-31 21:52:16 +01:00
Remi Planel	1c0d596582	Merge remote-tracking branch 'upstream/master'	2019-07-30 16:15:20 +02:00
marchoeppner	b31db18dfb	Adding config file for CCGA dx cluster	2019-07-29 12:08:07 +02:00
Remi Planel	1cb132a457	Define a profile for the Pasteur config	2019-07-24 11:32:25 +02:00
Olga Botvinnik	474e98daaf	Merge branch 'master' into olgabot/czb-update	2019-07-09 16:02:25 -07:00
Olga Botvinnik	069963ff8a	Make czbiohub_aws_highpriority only set the AWS Batch queue and nothing else	2019-07-03 16:01:47 -07:00
Olga Botvinnik	6a2d2003f0	Add high priority AWS batch queue to CZBiohub AWS	2019-07-01 09:25:46 -07:00
Olga Botvinnik	cfcb533b95	Add czbiohub_aws to list of configs"	2019-06-25 19:02:49 -07:00
Olga Botvinnik	268e411d10	Add czbiohub_aws to list	2019-06-05 14:42:15 -07:00
Tobias Schraink	51c2a54399	added nyu prince and bigpurple configs	2019-04-17 16:59:38 -04:00
Harshil Patel	26c101a5ab	Alphabetical order	2019-03-13 16:53:30 +00:00
Harshil Patel	1843b2218c	Update nfcore_custom.config	2019-03-13 16:52:57 +00:00
Harshil Patel	857b0565c2	Update nfcore_custom.config	2019-03-13 16:51:45 +00:00
Phil Ewels	d0ca05a221	;	2019-03-13 17:33:23 +01:00
Phil Ewels	1191863e1c	Removed params.config_profile_name, added params.hostnames	2019-03-13 17:19:34 +01:00
Sven Fillinger	1dc523d726	Removes test config	2019-03-08 10:37:27 +01:00
Sven F	4e1cb46dc5	Update nfcore_custom.config	2019-03-06 20:22:45 +01:00
Sven F	23c05308de	Merge branch 'master' into dev	2019-03-06 19:54:32 +01:00
drpatelh	53d56310bb	Added conf folder to paths	2019-03-06 18:14:45 +00:00
Sven Fillinger	638f986f34	Adds profile integration tests	2019-03-06 17:42:14 +01:00
Phil Ewels	6daf76f47d	Hotfix for breaking pipelines that don't already support params.custom_config_base	2019-03-06 17:03:13 +01:00
Sven F	ad47005fb6	Update nfcore_custom.config ... Co-Authored-By: apeltzer <apeltzer@users.noreply.github.com>	2019-03-06 13:13:52 +01:00
Alexander Peltzer	20deaf3b46	Provide fix for online issues	2019-03-06 12:59:54 +01:00
Alexander Peltzer	8ebcfa26a9	Update nfcore_custom.config ... Fix mini typo	2019-03-06 08:21:34 +01:00
Phil Ewels	9fb5715c4c	Added support for new params.custom_config_base option	2019-03-05 16:12:39 +01:00
Martin Proks	548c8bca3f	Updated munin doc and configuration	2019-01-10 15:46:16 +01:00
Alexander Peltzer	d633cc87d0	Add SHH to config available	2019-01-03 16:03:45 +01:00
phue	5c609859c5	add config for MENDEL cluster	2018-12-04 16:58:33 +01:00
Harshil Patel	19c66f002b	Update nfcore_custom.config	2018-11-26 23:40:11 +00:00
Harshil Patel	d1f10bba3e	Update nfcore_custom.config	2018-11-26 22:49:03 +00:00
Phil Ewels	e38e9327f4	Some tidying	2018-11-26 17:32:06 +01:00
drpatelh	1bf45362e5	Added custom profiles	2018-11-23 16:33:22 +00:00