54 commits

Author	SHA1	Message	Date
Maxime Borry	7a2fe44b43	resource based queuing	2019-10-25 15:50:49 +02:00
maxibor	5e54912ada	add queue choice	2019-10-25 14:08:02 +02:00
maxibor	c7eed3fa4c	fix queuesize scope and singularity	2019-06-14 19:16:20 +02:00
maxibor	de1b2aa7d2	remove autoformat added space	2019-04-25 15:50:48 +02:00
maxibor	efd831a8a3	add automounts for singularity	2019-04-25 15:48:20 +02:00
Alexander Peltzer	7d7c18273b	Merge pull request #41 from tobsecret/master ... Added configs for NYU clusters BigPurple (NYU Med) and Prince (NYU main campus) Last PR merge before Easter holiday ;-)	2019-04-19 00:13:49 +02:00
Tobias Schraink	4ba831705d	added nyu prince and bigpurple md files, added singularity cacheDir to prince and bigpurple configs	2019-04-18 14:13:02 -04:00
maxibor	9d9ac4c3bb	remove whitespace	2019-04-18 11:22:54 +02:00
maxibor	1772f4119c	adding igenomes to shh config	2019-04-18 11:19:53 +02:00
Tobias Schraink	4a915e330a	added warnings to run on SCRATCH	2019-04-17 17:15:16 -04:00
Tobias Schraink	51c2a54399	added nyu prince and bigpurple configs	2019-04-17 16:59:38 -04:00
maxibor	76a5fcf077	switch to queueSize 16 for shh config	2019-03-20 13:44:13 +01:00
maxibor	0929349303	add queueSize limited to 5	2019-03-18 11:13:11 +01:00
James A. Fellows Yates	ecb36dd8c2	Reduced memory and CPUs for cdag compatibility ... Also matches 'fair use' policy	2019-03-14 21:26:43 +01:00
James A. Fellows Yates	3da1373c14	Updated path to centralised singularity cache	2019-03-14 21:16:02 +01:00
Harshil Patel	8bc975c8c3	Merge pull request #33 from ewels/master ... Removed params.config_profile_name, added params.hostnames	2019-03-13 16:49:43 +00:00
Phil Ewels	1191863e1c	Removed params.config_profile_name, added params.hostnames	2019-03-13 17:19:34 +01:00
Alexander Peltzer	fbf9397182	Bump	2019-03-12 18:48:29 +01:00
Alexander Peltzer	3ee7195fa8	Central resource for both binac and cfc now	2019-03-12 14:58:41 +01:00
Alexander Peltzer	68b759d6ef	Mini Update	2019-03-11 18:12:35 +01:00
Alexander Peltzer	f4f3c4e53b	Roll out binac too	2019-03-11 14:29:42 +01:00
Alexander Peltzer	6b21538062	Rolling out iGenomes now	2019-03-07 16:12:30 +01:00
phue	59887d9bc8	update config for MENDEL cluster	2019-02-27 16:03:26 +00:00
Alexander Peltzer	164ae59568	Update cfc.config ... Please use the newest singularity version 3.0.3!	2019-02-21 10:49:29 +01:00
Alexander Peltzer	d6ea834f40	Update cfc.config	2019-02-21 09:17:28 +01:00
Alexander Peltzer	637ffb782c	Fix CFC config	2019-02-19 17:03:53 +01:00
James A. Fellows Yates	7a51c684f5	Made small SLURM queue change for SHH	2019-01-21 20:31:37 +01:00
Martin Proks	7acd9cf7df	Updating suggested changes	2019-01-11 15:28:10 +01:00
Martin Proks	89dbb6c061	Setting Singularity as default method	2019-01-11 14:37:12 +01:00
Martin Proks	548c8bca3f	Updated munin doc and configuration	2019-01-10 15:46:16 +01:00
Martin Proks	f259178642	Added munin config boilerplate	2019-01-09 17:27:55 +01:00
Phil Ewels	66a08891c7	Documentation tweaks	2019-01-07 14:25:06 +01:00
Harshil Patel	59bc3b43be	Update crick.config	2019-01-07 11:35:49 +00:00
Harshil Patel	f81c67627e	Update crick.config	2019-01-07 11:18:01 +00:00
Alexander Peltzer	d4ea56aaae	Update UCT_Hex profile	2019-01-07 12:14:04 +01:00
Alexander Peltzer	2b814041ee	Add in both uppmax profiles	2019-01-04 16:33:54 +01:00
Alexander Peltzer	6f7a3cc422	Add Hebbe	2019-01-04 16:30:40 +01:00
Alexander Peltzer	e07d8bd687	Get rid of header in CRICK config	2019-01-04 16:29:49 +01:00
Alexander Peltzer	aca790bb4b	Add CCGA Profile	2019-01-04 16:28:41 +01:00
Alexander Peltzer	7af6b48b4d	Adjust general usage to separate params section	2019-01-04 14:55:22 +01:00
Alexander Peltzer	9c97680d4c	Add UZH	2019-01-04 14:49:52 +01:00
Alexander Peltzer	bc8e05f4b3	Add Phoenix	2019-01-04 14:48:14 +01:00
Alexander Peltzer	6ae7d02b14	Add Mendel	2019-01-04 14:46:30 +01:00
Alexander Peltzer	078272745a	Update BINAC, CFC, SHH COnfig profiles	2019-01-04 14:42:09 +01:00
Alexander Peltzer	87cea82c43	Use james github handle	2019-01-04 10:21:16 +01:00
Alexander Peltzer	a78fe147f0	Add more details on config profiles	2019-01-04 10:19:39 +01:00
Alexander Peltzer	1051339461	Remove base config stuff	2019-01-03 16:02:07 +01:00
Alexander Peltzer	98fca8a1ef	Add SHH Configuration	2019-01-03 16:01:06 +01:00
phue	5c609859c5	add config for MENDEL cluster	2018-12-04 16:58:33 +01:00
Harshil Patel	ddc0bbd7b3	Update phoenix.config	2018-11-26 23:31:44 +00:00