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136 commits 4 branches 0 tags 1.9 MiB
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42 commits

Author SHA1 Message Date
Olga Botvinnik
917ec0863d add default trimming 2019-07-03 16:01:03 -07:00
Olga Botvinnik
6a2d2003f0 Add high priority AWS batch queue to CZBiohub AWS 2019-07-01 09:25:46 -07:00
Olga Botvinnik
70b5205d15 Add human salmon index and mouse star index 2019-06-27 15:02:47 -07:00
Olga Botvinnik
d1983f8acd Use new and improved GENCODE+ERCC annotation 2019-06-26 17:56:26 -07:00
Olga Botvinnik
b0c67e0a9b Add both seqCenter and seq_center 2019-06-24 17:52:10 -07:00
Olga Botvinnik
acad9ac7e5 Try to clean up czb update 2019-06-24 17:50:36 -07:00
phue
13df59bfaf remove singularity support 
reasons:

* the kernel running on the compute nodes does not support overlayfs und thus containers downloaded from
  public registries won't run because they lack the /lustre mountpoint

* building containers manually using the Singularity file would work, however nf-core pipelines will stop
  providing these files in future releases
 2019-03-12 17:57:31 +00:00
Alexander Peltzer
68b759d6ef Mini Update 2019-03-11 18:12:35 +01:00
Alexander Peltzer
f4f3c4e53b Roll out binac too 2019-03-11 14:29:42 +01:00
Alexander Peltzer
6b21538062 Rolling out iGenomes now 2019-03-07 16:12:30 +01:00
phue
59887d9bc8 update config for MENDEL cluster 2019-02-27 16:03:26 +00:00
Alexander Peltzer
164ae59568
Update cfc.config 
Please use the newest singularity version 3.0.3!
 2019-02-21 10:49:29 +01:00
Alexander Peltzer
d6ea834f40
Update cfc.config 2019-02-21 09:17:28 +01:00
Alexander Peltzer
637ffb782c
Fix CFC config 2019-02-19 17:03:53 +01:00
James A. Fellows Yates
7a51c684f5
Made small SLURM queue change for SHH 2019-01-21 20:31:37 +01:00
Martin Proks
7acd9cf7df
Updating suggested changes 2019-01-11 15:28:10 +01:00
Martin Proks
89dbb6c061
Setting Singularity as default method 2019-01-11 14:37:12 +01:00
Martin Proks
548c8bca3f
Updated munin doc and configuration 2019-01-10 15:46:16 +01:00
Martin Proks
f259178642
Added munin config boilerplate 2019-01-09 17:27:55 +01:00
Phil Ewels
66a08891c7 Documentation tweaks 2019-01-07 14:25:06 +01:00
Harshil Patel
59bc3b43be
Update crick.config 2019-01-07 11:35:49 +00:00
Harshil Patel
f81c67627e
Update crick.config 2019-01-07 11:18:01 +00:00
Alexander Peltzer
d4ea56aaae Update UCT_Hex profile 2019-01-07 12:14:04 +01:00
Alexander Peltzer
2b814041ee Add in both uppmax profiles 2019-01-04 16:33:54 +01:00
Alexander Peltzer
6f7a3cc422 Add Hebbe 2019-01-04 16:30:40 +01:00
Alexander Peltzer
e07d8bd687 Get rid of header in CRICK config 2019-01-04 16:29:49 +01:00
Alexander Peltzer
aca790bb4b Add CCGA Profile 2019-01-04 16:28:41 +01:00
Alexander Peltzer
7af6b48b4d Adjust general usage to separate params section 2019-01-04 14:55:22 +01:00
Alexander Peltzer
9c97680d4c Add UZH 2019-01-04 14:49:52 +01:00
Alexander Peltzer
bc8e05f4b3 Add Phoenix 2019-01-04 14:48:14 +01:00
Alexander Peltzer
6ae7d02b14 Add Mendel 2019-01-04 14:46:30 +01:00
Alexander Peltzer
078272745a Update BINAC, CFC, SHH COnfig profiles 2019-01-04 14:42:09 +01:00
Alexander Peltzer
87cea82c43 Use james github handle 2019-01-04 10:21:16 +01:00
Alexander Peltzer
a78fe147f0 Add more details on config profiles 2019-01-04 10:19:39 +01:00
Alexander Peltzer
1051339461 Remove base config stuff 2019-01-03 16:02:07 +01:00
Alexander Peltzer
98fca8a1ef Add SHH Configuration 2019-01-03 16:01:06 +01:00
phue
5c609859c5 add config for MENDEL cluster 2018-12-04 16:58:33 +01:00
Harshil Patel
ddc0bbd7b3
Update phoenix.config 2018-11-26 23:31:44 +00:00
Alexander Peltzer
42ed4b9da4 Add Phoenix configs 2018-11-27 00:02:40 +01:00
Harshil Patel
2c513e5266
Update binac.config 2018-11-26 22:47:36 +00:00
Phil Ewels
e38e9327f4 Some tidying 2018-11-26 17:32:06 +01:00
drpatelh
d52db66077 Added existing configs from all pipelines 2018-11-23 15:56:34 +00:00