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837 commits 4 branches 0 tags 1.9 MiB
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390 commits

Author SHA1 Message Date
Asaf Peer
9b2d5bfead
Merge pull request #216 from asafpr/master 
Added JAX conf
 2021-03-24 03:31:14 -04:00
Alexander Peltzer
5988c51361
Merge pull request #211 from DoaneAS/master 
Adding WCM.config for Weill Cornell Medicine cluster
 2021-03-23 14:58:27 +01:00
Edmund Miller
a6975cdd4e
fix(ganymede): large => high 
Co-authored-by: drpatelh <drpatelh@users.noreply.github.com>
 2021-03-22 12:42:56 -05:00
Edmund Miller
34ccce9531
fix(ganymede): Add process resources 
Trimgalore though it can be a bottom neck, doesn't require the 1 big
memory node we have and can be run on the genomics queue.
 2021-03-21 21:47:59 -05:00
Edmund Miller
4570718b12
fix(ganymede): Add TMPDIR and SINGULARITY_CACHEDIR env variables 2021-03-21 21:45:39 -05:00
Asaf Peer
30c864e112 added JAX conf 2021-03-21 06:49:11 -04:00
Noirot Céline
7e9f83ee81 Add IFB config 2021-03-16 15:54:19 +01:00
Ashley S Doane
e7f8189dfc
Create wcm.config 2021-03-11 13:52:11 -05:00
phue
da3bd2693d cbe: add rapid qos 
and update config url
 2021-03-10 11:26:01 +01:00
maxibor
286e18b80c update shh config after CDAG departure 2021-02-17 10:22:05 +01:00
drpatelh
01a4f8559e Update links to be consistent 2021-02-16 13:17:16 +00:00
Harshil Patel
6ffaf922c5
Update genomes.config 2021-02-16 10:28:32 +00:00
Marc Hoeppner
1f2fce00aa Updating the CCGA DX profile to new storage system 2021-02-16 09:02:16 +01:00
Harshil Patel
4de0855218
Update genomes.config 2021-02-15 18:48:03 +00:00
drpatelh
9d500cf679 Reorder params 2021-02-15 17:02:26 +00:00
drpatelh
f283dfb2dc Add ARTIC primer sets to genome config 2021-02-15 16:58:30 +00:00
James A. Fellows Yates
86566ddd3b
Merge pull request #204 from jfy133/master 
Add a 'big_data' profile for eager @ SHH
 2021-02-04 15:07:52 +01:00
James A. Fellows Yates
e32f1e46ff
Update shh.config 2021-02-04 08:13:16 +01:00
James A. Fellows Yates
c515a401c7
Update shh.config 2021-02-04 08:06:35 +01:00
James A. Fellows Yates
82fe8a04be
Update shh.config 2021-02-04 08:02:33 +01:00
James A. Fellows Yates
e7ac0bae13
Update shh.config 2021-02-04 08:00:57 +01:00
James A. Fellows Yates
eb725f9ea3
Update shh.config 2021-02-03 20:13:09 +01:00
Charles Plessy
1608b36dcf Institutional profile for Okinawa Institute of Science and Technology 2021-02-02 17:40:10 +09:00
Thiseas C. Lamnidis
713a032a36
Add debug profile 
which deactivates cleanup of workdir after successful run
 2021-01-26 15:08:21 +01:00
James A. Fellows Yates
26d164ca74
Remove ceh profile for now 2021-01-21 13:15:08 +01:00
Åshild J. Vågene
594985f1ee
Update and rename ceh.config to seg_globe.config 2021-01-21 11:43:34 +01:00
Åshild J. Vågene
8fa720b9cc
Update conf/ceh.config 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2021-01-21 11:15:06 +01:00
Åshild J. Vågene
f8973f153a
Update ceh.config 2021-01-21 00:31:49 +01:00
Åshild J. Vågene
91594dffea
Update ceh.config 2021-01-21 00:29:43 +01:00
Åshild J. Vågene
c11c26f15f
Create ceh.config 2021-01-20 23:45:26 +01:00
James A. Fellows Yates
1c25cb033b
Add big_data profile 2021-01-19 13:53:01 +01:00
rbpisupati
9b5ac5c89d added anaconda module for cbe 2021-01-15 12:55:46 +01:00
James A. Fellows Yates
a4c55b3ea9
Fix time limit 0-9 typo 2021-01-06 10:44:12 +01:00
Combiz Khozoie
17cf4e3b35 fixed indents 2020-12-18 15:34:56 +00:00
Combiz Khozoie
3824403b4e removed workDir from Imperial configs 2020-12-18 10:31:36 +00:00
Combiz Khozoie
a61992d144 Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO 2020-12-18 10:21:26 +00:00
marcel-keller
c9ceaff3b3
change of directory for conda environments 
change of directory due to recent changes in our infrastructure
 2020-12-09 15:11:21 +02:00
emnilsson
8cc2fc5ecb
Merge pull request #193 from emnilsson/master 
Modified ampliseq-specific uppmax-config
 2020-12-02 13:40:43 +01:00
Alexander Peltzer
99985c658f
Merge pull request #194 from marcel-keller/ebc 
Update ebc.config
 2020-11-26 14:12:33 +01:00
marcel-keller
5590a9743a
Update ebc.config 
queueSize to 64
 2020-11-26 15:05:25 +02:00
Emelie Nilsso
febf38dd8e Removed an old process so that only relevant processes are included 2020-11-26 13:38:47 +01:00
Emelie Nilsso
d61ed01d2d Updated process names according to ampliseq main.nf 2020-11-25 17:50:30 +01:00
Emelie Nilsso
37e7cfae2c Removed unnecessary code that was used to troubleshoot 2020-11-24 07:14:23 +01:00
Emelie Nilsso
cd59bba83e Merge branch 'master' of https://github.com/nf-core/configs 2020-11-24 07:10:05 +01:00
Emelie Nilsso
c47088cda2 Merge remote-tracking branch 'origin' 2020-11-23 21:34:08 +01:00
Emelie Nilsso
2ea06ffab8 Modified uppmax and ampliseq specific config to fit with the divided preparation of the database 2020-11-23 21:20:36 +01:00
Thiseas C. Lamnidis
71d1ff2226
Add params block to sdag queue 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2020-11-18 13:04:46 +01:00
Thiseas C. Lamnidis
da781907f2
Move sdag queue specification block in sdag profile 2020-11-17 19:45:06 +01:00
Maxime Borry
c95fd9d52f
Merge pull request #186 from jfy133/shh-singularity-runoptions 
Remove custom singularity runOptions from SHH config
 2020-11-10 15:39:40 +01:00
James A. Fellows Yates
9d4d682867
Update shh.config 2020-11-10 15:14:03 +01:00