theoportlock
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9c97220919
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Merge branch 'master' of https://github.com/theoportlock/configs
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2021-09-15 11:43:09 +02:00 |
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theoportlock
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3c86f8f47c
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Removes the broken clusterOptions
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2021-09-15 11:42:43 +02:00 |
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Theo Portlock
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05ad3e0577
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Update conf/rosalind.config
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2021-09-09 13:37:02 +02:00 |
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theoportlock
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b240142cc3
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Adds rosalind configuration
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2021-09-08 14:33:39 +02:00 |
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James Fellows Yates
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b0e344846d
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Changes after code review from @aidaanva
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2021-08-04 10:37:49 +02:00 |
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James Fellows Yates
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76fc461670
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Try new strategy for SGE/JAVA bs
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2021-08-04 10:14:56 +02:00 |
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James A. Fellows Yates
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00491de038
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Update eva.config
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2021-08-03 13:54:14 +02:00 |
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Barry digby
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70b2644c9a
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.
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2021-07-27 17:39:37 +01:00 |
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Barry digby
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2b6e80561a
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Merge branch 'master' of https://github.com/nf-core/configs into
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2021-07-27 17:13:17 +01:00 |
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Barry digby
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4f962260d0
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s
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2021-07-27 17:08:53 +01:00 |
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Barry digby
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04c0da5a2f
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nuig confg (lugh)
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2021-07-27 17:05:27 +01:00 |
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ameynert
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2112168420
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Set BLASTDB_LMDB_MAP_SIZE
This environment variable needs to be set in order to prevent memory allocation errors in the MAKEBLASTDB process.
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2021-07-22 15:07:19 +01:00 |
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ameynert
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4ceb369af5
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eddie.config for viralrecon pipeline
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2021-07-21 12:10:43 +01:00 |
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Maxime U. Garcia
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30e058abf0
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Merge branch 'master' into master_kraken
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2021-07-20 09:26:56 +02:00 |
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Harshil Patel
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962dca7a46
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Add ARTIC v1200 primers to genomes config for viralrecon
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2021-07-12 12:24:49 +01:00 |
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Gisela Gabernet
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e2088a008d
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Merge branch 'master' into master
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2021-07-03 12:24:42 +02:00 |
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ggabernet
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ee2e8392ab
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add aws_tower profile
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2021-07-03 12:17:21 +02:00 |
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Harshil Patel
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69f63a006d
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Merge pull request #254 from drpatelh/articv4
Add ARTIC v4 primers to genomes config for viralrecon
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2021-07-01 12:31:02 +01:00 |
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Gisela Gabernet
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aae0f0bf07
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Merge pull request #255 from ggabernet/master
update cfc configs
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2021-07-01 10:59:25 +02:00 |
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ggabernet
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d59d099fe8
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remove load module in cfc configs
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2021-07-01 10:52:54 +02:00 |
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James A. Fellows Yates
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5f4b915ae8
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Update eva.config
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2021-06-29 11:31:00 +02:00 |
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Harshil Patel
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93cfc48afd
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Add ARTIC v4 primers to genomes config
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2021-06-21 21:04:16 +01:00 |
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Edmund Miller
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21e1037e0c
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docs(sysbio): Add rnaseq specific docs
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2021-06-17 09:18:45 -05:00 |
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Edmund Miller
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e35c5fd1d8
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fix(sysbio): Add nf-core params
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2021-06-17 08:32:31 -05:00 |
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Edmund Miller
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41ae99d34a
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feat(sysbio): Add cleanup
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2021-06-17 08:17:55 -05:00 |
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Edmund Miller
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14a2106c63
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fix(sysbio): Move rnaseq specific things to pipeline config
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2021-06-17 08:14:48 -05:00 |
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Edmund Miller
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472082254a
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fix(sysbio): Add Star resources
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2021-06-16 21:18:48 -05:00 |
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Edmund Miller
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b11f137901
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fix(sysbio): Leave igenomes unfinished
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2021-06-16 21:18:28 -05:00 |
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Edmund Miller
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04d0b27e81
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fix(sysbio): Reduce memory on high processes
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2021-06-16 21:17:40 -05:00 |
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Edmund Miller
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2b58a62a9b
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feat(utd): Add initial sysbio config
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2021-06-11 14:50:58 -05:00 |
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ggabernet
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c3385593cb
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revert cfc config
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2021-06-11 14:59:09 +02:00 |
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mseybold
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f196de8246
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Update cfc.config
singularity is now installed natively on the nodes, so no more need for a module here
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2021-06-10 12:34:58 +02:00 |
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James A. Fellows Yates
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756f067213
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Merge pull request #248 from jfy133/eva
Fix MakeSeqDict eager @ eva
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2021-06-07 13:26:05 +02:00 |
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James A. Fellows Yates
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da8e002969
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Merge pull request #247 from jfy133/shh-fx
Fix eageR@SHH HOPS profile human ref path
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2021-06-07 10:55:01 +02:00 |
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James A. Fellows Yates
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fc8b1162c1
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Fix HOPS huamn ref path
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2021-06-07 10:48:35 +02:00 |
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James A. Fellows Yates
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5bf57894a5
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Merge pull request #246 from jfy133/shh-update
Make eager@SHH big_data go by default to medium via run time
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2021-06-04 12:32:28 +02:00 |
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James A. Fellows Yates
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31d46cb0a9
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Make big_data go by default to medium via run time
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2021-06-04 12:22:54 +02:00 |
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Øyvind Almelid
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c75ceec35d
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Merge pull request #244 from oalmelid/master
eddie.conf: Add TMPDIR and mount for it to singularity configuration + Migrate to BioinformaticsResources for genomes.
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2021-05-25 10:03:05 +01:00 |
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Øyvind Almelid
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f6578f727d
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Add TMPDIR and mount for it to singularity configuration
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2021-05-25 09:54:08 +01:00 |
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Olga Botvinnik
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2ac4693421
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Merge pull request #243 from nf-core/olgabot-patch-1
executor.cli --> aws.batch.cliPath
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2021-05-20 10:34:55 -07:00 |
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MaxUlysse
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05548bdb75
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fix: forgotten }
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2021-05-20 09:37:48 +02:00 |
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Olga Botvinnik
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8166e0f606
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executor.cli --> aws.batch.cliPath
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2021-05-19 13:36:15 -07:00 |
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MaxUlysse
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73fcc4495a
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feat: update owner of profile
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2021-05-19 20:46:52 +02:00 |
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Phil Ewels
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9c4830c8d5
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Merge pull request #238 from nf-core/hebbe-config-fix
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2021-05-19 17:46:52 +02:00 |
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James A. Fellows Yates
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3bcd55966d
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Update eva.config
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2021-05-05 11:39:33 +02:00 |
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James A. Fellows Yates
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f2413553a3
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Merge pull request #240 from jfy133/shh
eager@SHH Add additional retry allowance for silly big data in markdups
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2021-05-05 10:52:58 +02:00 |
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James A. Fellows Yates
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a849fe991c
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Add additional retry allowance for silly big data in markdups
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2021-05-04 21:43:19 +02:00 |
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Maxime U. Garcia
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77bd7f567f
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Merge pull request #228 from asafpr/master
updated jax resources
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2021-05-02 14:47:19 +02:00 |
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Phil Ewels
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76b62b478d
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Fix hebbe withName regex
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2021-04-29 23:06:56 +02:00 |
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Barry digby
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24a4119e43
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memory test
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2021-04-29 14:24:57 +01:00 |
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