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Author SHA1 Message Date
lquayle88
9fef35d7d3 Updated pipeline configs for atacseq and chipseq 2022-09-13 17:08:56 +01:00
lquayle88
a9b62c53e0 Added global institutional and pipeline configs for sbc_sharc 2022-09-13 17:02:44 +01:00
Bruno Grande
47fa890ad7
Merge pull request #407 from Sage-Bionetworks-Workflows/bgrande/sage-aws 
Improve AWS-related config for Sage profile
 2022-09-01 13:29:49 -07:00
Bruno Grande
80831358f9
Merge branch 'master' into bgrande/sage-aws 2022-09-01 13:21:36 -07:00
Simon Pearce
6b83603325
Merge pull request #400 from SPPearce/crukmi 
Cancer Research UK Manchester Institute config
 2022-09-01 14:01:00 +01:00
SPearce
a142ad7eae Added link to Sarek specific documentation 2022-09-01 13:55:08 +01:00
SPearce
5981b643c5 Updated the sarek pipeline config 2022-09-01 11:47:12 +01:00
Simon Pearce
2c738cae33
Update crukmi.config 2022-09-01 11:24:11 +01:00
Simon Pearce
a8faeda141
Update crukmi.config 2022-09-01 11:23:07 +01:00
SPearce
800931bff2 Add Sarek specific config 2022-09-01 11:13:23 +01:00
Simon Pearce
ba1d3f24cc
Update crukmi.config 2022-09-01 11:07:14 +01:00
Simon Pearce
897d0a188b
Update nfcore_custom.config 
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
 2022-09-01 10:32:43 +01:00
Simon Pearce
df685f4f0f
Merge branch 'master' into crukmi 2022-09-01 10:29:08 +01:00
James A. Fellows Yates
3664b4812d
Merge pull request #411 from nf-core/docs-improvement 
Add documentation for when you need to use an environmental variable
 2022-09-01 11:24:31 +02:00
Simon Pearce
81768e16a9
Merge branch 'nf-core:master' into crukmi 2022-09-01 10:20:25 +01:00
James A. Fellows Yates
5769927bbc
Merge branch 'master' into docs-improvement 2022-09-01 11:15:10 +02:00
Maxime U. Garcia
ebcc3d278f
Merge pull request #410 from nf-core/chear-var-fix 
Fix cheaha config due to use of environmental variable
 2022-09-01 11:13:37 +02:00
James Fellows Yates
51f0359b3d Add documentation for when you need to use an environmental variable 2022-09-01 11:12:15 +02:00
Simon Pearce
14a97ad0e8
Merge branch 'master' into crukmi 2022-09-01 10:07:24 +01:00
James Fellows Yates
b22e8b79c7 Fix cheaha config due to use of environmental variable 2022-09-01 11:01:23 +02:00
ameynert
69468e7ca7
Merge pull request #409 from kalayaneech/master 
A new profile for adcra [KMUTT]
 2022-09-01 09:55:12 +01:00
ameynert
28e59e38b4
Run prettier 2022-09-01 09:28:05 +01:00
Kalayanee Chairat
8e275182ea
Update main.yml 2022-09-01 15:16:56 +07:00
Kalayanee Chairat
bf2ab39ea0
Update README.md 2022-09-01 15:15:51 +07:00
Kalayanee Chairat
9681716205
Update adcra.config 
Fixing typo
 2022-09-01 15:11:18 +07:00
Kalayanee Chairat
700f14d828
Merge pull request #1 from nf-core/master 
Merging from master
 2022-09-01 15:07:43 +07:00
Simon Pearce
864da0b5be
Merge branch 'master' into crukmi 2022-08-31 18:19:47 +01:00
Bruno Grande
9a37404a04
Merge branch 'master' into bgrande/sage-aws 2022-08-31 09:22:07 -07:00
Bruno Grande
179b343bd2 Incorporate resource limits 2022-08-31 09:18:27 -07:00
Bruno Grande
c883723559 Simplify resource adjustments 2022-08-31 09:10:30 -07:00
SPearce
1e1ca1e96b Incorporating executor options 2022-08-31 15:35:57 +01:00
Annick Renevey
bfeafdbf25
Merge pull request #408 from nf-core/rnafusion_config_hasta 
rnafusion setup for hasta usage [WIP]
 2022-08-31 14:36:08 +02:00
Annick Renevey
242101db16 fix extra space 2022-08-31 14:26:32 +02:00
Annick Renevey
0851903f66 include new config in pipeline configs file 2022-08-31 14:19:07 +02:00
Annick Renevey
51871ea6fc rnafusion setup for hasta usage 2022-08-31 11:32:01 +02:00
Lara Ianov
08b62ede83
Merge pull request #404 from nf-core/cheaha_singularity_update 
Cheaha Config Update
 2022-08-30 14:45:50 -05:00
Austyn Trull
90f638d376 Updating the cheaha documentation to clarify that /data/temporary-scratch/atrull will be used as storage for files that would normally go into one of the temporary locations when using Singularity 2022-08-29 10:47:46 -05:00
James A. Fellows Yates
b33aef1431
Merge pull request #386 from andrewfrank/patch-2 
Update google.config to fix custom VM memory error
 2022-08-29 08:30:39 +02:00
James A. Fellows Yates
c70a95f9c9
Merge branch 'master' into patch-2 2022-08-29 08:23:31 +02:00
Bruno Grande
9c8cb71bc7
Merge branch 'master' into bgrande/sage-aws 2022-08-25 16:29:20 -07:00
Bruno Grande
317e5a16cb Improve AWS-related config for Sage profile 2022-08-25 16:24:52 -07:00
Harshil Patel
84b0b705a2
Merge pull request #405 from drpatelh/monkeypox 
Replace NC_063383.1 fasta and gff and add Nextclade config
 2022-08-25 12:57:43 +01:00
kalayaneech
93c4ba67a0 adding adcra configuration 2022-08-25 16:17:09 +07:00
Harshil Patel
8b9661825b Replace NC_063383.1 fasta and gff and add Nextclade config 2022-08-24 15:21:44 +01:00
Harshil Patel
d71e31c378
Merge pull request #403 from drpatelh/monkeypox 
Add monkeypox genome files to viralrecon genome config file
 2022-08-24 12:16:21 +01:00
Harshil Patel
8dcfcfd856 Add monkeypox genome files to viralrecon genome config file 2022-08-24 12:13:17 +01:00
Austyn Trull
8d5ae4c3ab Committing changes made by Brandon Wilk so that singularity containers will use scratch space 2022-08-23 15:30:13 -05:00
Ramprasad Neethiraj
49c71e0c28
Merge pull request #363 from ramprasadn/feat/hasta_update 
Add a profile for stubruns in hasta
 2022-08-23 22:14:18 +02:00
Ramprasad Neethiraj
9182b55acc
Merge branch 'master' into feat/hasta_update 2022-08-23 11:21:58 +02:00
Anders Jemt
9c26cfddaa
Merge pull request #390 from raysloks/feat/hasta_java_memory_fix 
Feat/hasta java memory fix
 2022-08-22 15:46:39 +02:00