millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-15 14:13:08 +00:00
Code Issues Releases Packages Activity
1209 commits 4 branches 0 tags 1.9 MiB
Commit graph

1209 commits

This branch
This branch
All branches
Author SHA1 Message Date
ameynert
af6a6b1060
Details on running on eddie 
Removed Conda support, Singularity by default. Added login and screen session on wild west node options.
 2021-03-18 12:48:48 +00:00
ameyner2
bb388fb88b Merge branch 'master' of github.com:ameynert/configs 2021-03-18 12:32:11 +00:00
ameyner2
059d353a1e Removed Conda, added automount Singularity 2021-03-18 12:31:56 +00:00
Rike
6221b67bcf Give Strelka a complete compute node 2021-03-18 11:11:02 +01:00
Rike
b1846af9d3 reduce mapping resource further to compute node 2021-03-18 11:10:00 +01:00
FriederikeHanssen
67c93a4743
Update conf/pipeline/sarek/cfc.config 
Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com>
 2021-03-18 11:06:38 +01:00
ameynert
4ad6bb2bec
Singularity info 2021-03-17 14:50:40 +00:00
Rike
b70097e495 remove new line 2021-03-17 15:46:18 +01:00
Harshil Patel
2ce1e2a9cc
Create rnaseq.config 2021-03-17 12:32:47 +00:00
ameyner2
d4cd07c646 Typo in beforescript 2021-03-17 09:21:26 +00:00
Maxime Garcia
ec11a9a951
Merge pull request #212 from noirot/master 
Add IFB config
 2021-03-16 16:55:38 +01:00
Noirot Céline
e3216ccf79 typo 2021-03-16 16:00:56 +01:00
Noirot Céline
cc17045914 Add institution 2021-03-16 15:58:29 +01:00
Noirot Céline
7e9f83ee81 Add IFB config 2021-03-16 15:54:19 +01:00
ameyner2
cfe13fe6c1 Fixed typo & added singularity tmpdir 2021-03-15 15:42:30 +00:00
Ashley S Doane
6343a7f87c
Update wcm.md 2021-03-11 14:01:07 -05:00
Ashley S Doane
d630bcfb6c
Create wcm.md 2021-03-11 13:59:55 -05:00
Ashley S Doane
e7f8189dfc
Create wcm.config 2021-03-11 13:52:11 -05:00
Rike
bb124a9be8 Reduce vc to run on compute 2021-03-11 16:11:41 +01:00
FriederikeHanssen
79ddbe1fea Add missing bracket 2021-03-11 09:29:03 +01:00
FriederikeHanssen
0057132e02 remove check_reource statement 2021-03-11 09:27:08 +01:00
Patrick Hüther
a64dfd98c2
Merge pull request #209 from phue/cbe_rapid_qos 
cbe: add rapid qos
 2021-03-10 21:03:08 +01:00
phue
da3bd2693d cbe: add rapid qos 
and update config url
 2021-03-10 11:26:01 +01:00
FriederikeHanssen
162c212dd4 Remove extra line 2021-03-10 11:17:23 +01:00
FriederikeHanssen
eb9012919c Set values for processes with max_mem/max_cpus 2021-03-10 11:16:18 +01:00
ameynert
bc961c7990
Merge pull request #1 from ggrimes/patch-1 
changed # to // for comments
 2021-03-04 19:48:45 +00:00
Graeme Grimes
babeccd020
changed # to // for comments 2021-03-04 16:45:21 +00:00
ameynert
4c0111f598
Eddie profile documentation initial commit 2021-03-04 14:46:58 +00:00
ameynert
6f09a233f0
Added singularity module 2021-03-04 14:46:23 +00:00
ameynert
3af2c6409f
Initial commit of eddie.config 2021-03-03 09:59:16 +00:00
ameynert
11e2083fb1
Added eddie profile to nfcore_custom.config list 2021-03-03 09:57:34 +00:00
Alexander Peltzer
bb8e82e9c7
Merge pull request #208 from maxibor/master 
Update shh config after CDAG departure
 2021-02-17 10:41:13 +01:00
maxibor
286e18b80c update shh config after CDAG departure 2021-02-17 10:22:05 +01:00
Harshil Patel
d457699de1
Merge pull request #207 from drpatelh/primers 
Update links to be consistent for viralrecon genomes raw URLs
 2021-02-16 13:25:20 +00:00
drpatelh
01a4f8559e Update links to be consistent 2021-02-16 13:17:16 +00:00
Harshil Patel
6ffaf922c5
Update genomes.config 2021-02-16 10:28:32 +00:00
Alexander Peltzer
a4630a926d
Merge pull request #206 from marchoeppner/ccga_dx_update 
Updating the CCGA DX profile to new storage system
 2021-02-16 09:46:54 +01:00
Marc Hoeppner
1f2fce00aa Updating the CCGA DX profile to new storage system 2021-02-16 09:02:16 +01:00
Harshil Patel
4de0855218
Update genomes.config 2021-02-15 18:48:03 +00:00
Harshil Patel
76750ad59b
Merge pull request #205 from drpatelh/primers 
Add ARTIC primer sets to genome config
 2021-02-15 17:16:13 +00:00
drpatelh
9d500cf679 Reorder params 2021-02-15 17:02:26 +00:00
drpatelh
f283dfb2dc Add ARTIC primer sets to genome config 2021-02-15 16:58:30 +00:00
James A. Fellows Yates
0bac3691e3
Create mpcdf.config 2021-02-14 18:07:40 +01:00
James A. Fellows Yates
4339e5872c
Update eager.config 2021-02-14 18:05:06 +01:00
James Fellows Yates
5bfb9510c7 Add to testing 2021-02-14 17:59:55 +01:00
James Fellows Yates
a78aac327d Linting fixes 2021-02-14 17:58:50 +01:00
James Fellows Yates
537f52a640 Add MPI-EVA profile 2021-02-14 17:50:20 +01:00
James A. Fellows Yates
f0ba4853df
Merge pull request #14 from nf-core/master 
Latest changes into fork
 2021-02-14 08:50:51 +01:00
ggabernet
9b5bcbd434 update aws clipath 2021-02-09 22:06:59 +01:00
ggabernet
0909708b97 update with upstream 2021-02-09 22:01:27 +01:00