224 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
drpatelh	a692ded933	Remove workDir in czbiohub	2019-07-31 23:30:51 +01:00
drpatelh	7ee70fb742	Add in uppmax-devel	2019-07-31 22:52:20 +01:00
drpatelh	0326b56038	Add czbiohub back in	2019-07-31 22:48:22 +01:00
drpatelh	eb0e89eeaa	Remove SCRATCH variable	2019-07-31 22:44:54 +01:00
drpatelh	f3e61fdd66	Add prince back in	2019-07-31 22:40:43 +01:00
drpatelh	0f6802a7c8	Add hebbe back in	2019-07-31 22:37:11 +01:00
drpatelh	a496bfaeef	Remove uppmax_devel	2019-07-31 22:33:49 +01:00
drpatelh	70919d0dd3	Remove more configs	2019-07-31 22:28:03 +01:00
drpatelh	8be2897961	Remove problematic configs	2019-07-31 22:27:37 +01:00
drpatelh	daf1b9dcd2	Fix type in uppmax-devel	2019-07-31 22:09:30 +01:00
drpatelh	840a97ed68	Clean up and alphabetasize	2019-07-31 21:52:16 +01:00
drpatelh	6298f78bf4	.travis.yml	2019-07-31 21:33:47 +01:00
Alexander Peltzer	e29f46eaeb	Merge pull request #58 from rplanel/master ... Add Institut Pasteur config	2019-07-30 16:50:11 +02:00
Remi Planel	1c0d596582	Merge remote-tracking branch 'upstream/master'	2019-07-30 16:15:20 +02:00
Remi Planel	be28a34839	Updat Pasteur doc	2019-07-30 16:12:30 +02:00
Remi Planel	f9a2baf614	Add link to Pasteur doc	2019-07-30 16:10:33 +02:00
Remi Planel	64e78a3dc1	Update the doc	2019-07-30 15:17:25 +02:00
Remi Planel	6f264ac2ca	Add pasteur profile doc	2019-07-30 15:15:30 +02:00
Remi Planel	b4cffe0455	Remove buggy cluster option	2019-07-30 15:15:07 +02:00
Remi Planel	96ea16ddbd	Ignore vscode workspace	2019-07-30 15:14:18 +02:00
Harshil Patel	c522408888	Merge pull request #57 from marchoeppner/dev ... Adding CCGA DX cluster config	2019-07-29 13:13:13 +02:00
marchoeppner	b74f020f14	Update docs/ccga_dx.md ... Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>	2019-07-29 12:45:30 +02:00
marchoeppner	7d5de651aa	Update README.md ... Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>	2019-07-29 12:45:08 +02:00
marchoeppner	b31db18dfb	Adding config file for CCGA dx cluster	2019-07-29 12:08:07 +02:00
marchoeppner	71bc98afae	Adding config file for CCGA dx cluster	2019-07-29 12:06:29 +02:00
Remi Planel	fbb33fde63	Details	2019-07-24 11:43:08 +02:00
Remi Planel	1cb132a457	Define a profile for the Pasteur config	2019-07-24 11:32:25 +02:00
Remi Planel	1b30c5a4d2	Add the Pasteur profile	2019-07-24 11:32:02 +02:00
Alexander Peltzer	9106559b2f	Update cfc.config	2019-07-15 17:53:11 +02:00
Olga Botvinnik	c59ca56525	Merge pull request #51 from czbiohub/olgabot/czb-update ... [WIP] CZ Biohub update	2019-07-09 16:02:33 -07:00
Olga Botvinnik	474e98daaf	Merge branch 'master' into olgabot/czb-update	2019-07-09 16:02:25 -07:00
Alexander Peltzer	85f9b2e661	Merge pull request #55 from marchoeppner/ccga-config ... Updating CCGA config file	2019-07-05 08:52:01 +02:00
marchoeppner	fe0153befd	Updating CCGA documentation	2019-07-05 08:30:02 +02:00
marchoeppner	d66bf4e478	Updating CCGA documentation	2019-07-05 08:28:18 +02:00
marchoeppner	cb507177d5	Updating CCGA config file	2019-07-05 08:03:37 +02:00
Olga Botvinnik	069963ff8a	Make czbiohub_aws_highpriority only set the AWS Batch queue and nothing else	2019-07-03 16:01:47 -07:00
Olga Botvinnik	917ec0863d	add default trimming	2019-07-03 16:01:03 -07:00
Alexander Peltzer	45d36a1506	Update cfc.config ... Add Weblog for CFC cluster	2019-07-03 09:21:16 +02:00
Olga Botvinnik	6a2d2003f0	Add high priority AWS batch queue to CZBiohub AWS	2019-07-01 09:25:46 -07:00
Olga Botvinnik	70b5205d15	Add human salmon index and mouse star index	2019-06-27 15:02:47 -07:00
Olga Botvinnik	d1983f8acd	Use new and improved GENCODE+ERCC annotation	2019-06-26 17:56:26 -07:00
Olga Botvinnik	cfcb533b95	Add czbiohub_aws to list of configs"	2019-06-25 19:02:49 -07:00
Olga Botvinnik	b82d68c009	Add docs	2019-06-24 17:55:01 -07:00
Olga Botvinnik	b0c67e0a9b	Add both seqCenter and seq_center	2019-06-24 17:52:10 -07:00
Olga Botvinnik	acad9ac7e5	Try to clean up czb update	2019-06-24 17:50:36 -07:00
Szilveszter Juhos	b426332dc1	Merge pull request #50 from szilvajuhos/master ... Using correct reference location for munin	2019-06-24 09:57:43 +02:00
Szilveszter Juhos	f40ed194e3	Using correct reference location for munin	2019-06-24 09:54:37 +02:00
James A. Fellows Yates	505af9a909	Merge pull request #49 from maxibor/master ... Fix queuesize Ccope and Singularity	2019-06-18 20:36:36 +02:00
maxibor	c7eed3fa4c	fix queuesize scope and singularity	2019-06-14 19:16:20 +02:00
Alexander Peltzer	ebe838ac7e	Merge pull request #45 from czbiohub/olgabot/czbiohub ... [WIP] Add CZ Biohub	2019-06-06 13:35:34 +02:00