Phil Ewels
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28027a8489
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Prince config - use function to check if env SCRATCH is set
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2020-06-26 14:22:32 +02:00 |
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Phil Ewels
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cd9fbb22dc
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Merge pull request #161 from ewels/uct_hpc
Update UCT hex -> hpc
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2020-06-22 09:18:43 +02:00 |
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Alexander Peltzer
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7774a6a8f3
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Merge pull request #163 from piotr-faba-ardigen/add_bi_config
resolve #162 bug
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2020-06-19 08:57:44 +02:00 |
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Piotr Faba
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cb26bef3f3
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resolve #162 bug
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2020-06-18 20:30:05 +02:00 |
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Phil Ewels
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53e118210f
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Copy over HPC config
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2020-06-17 15:20:22 +02:00 |
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Phil Ewels
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dbfcd7c5e9
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Rename uct_hex > uct_hpc
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2020-06-17 15:17:22 +02:00 |
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Phil Ewels
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17824d2d62
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Merge czbiohub_aws_highpriority profile into czbiohub_aws
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2020-06-16 15:20:39 +02:00 |
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phue
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6d356cc918
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CBE: don't load singularity module
singularity is now installed from CentOS repos, the environment module will be removed
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2020-06-05 12:07:26 +02:00 |
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Alexander Peltzer
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f877644059
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Merge branch 'master' into master
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2020-05-29 11:43:47 +02:00 |
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Alexander Peltzer
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32ec230098
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Merge pull request #156 from piotr-faba-ardigen/add_bi_config
Add bi config
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2020-05-27 21:03:15 +02:00 |
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Piotr Faba
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f139750bf4
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print the error message before throwing Exception
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2020-05-27 19:14:43 +02:00 |
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Piotr Faba
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3c695ba71c
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test error display
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2020-05-27 18:00:47 +02:00 |
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Alexander Peltzer
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6011419454
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Merge pull request #154 from jfy133/master
Update SHH nf-core/eager group-specific profiles
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2020-05-27 17:52:09 +02:00 |
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Piotr Faba
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18d8edb046
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add description and profile
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2020-05-27 17:41:19 +02:00 |
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Piotr Faba
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66f191a1cf
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declate NXF_GLOBAL_CONFIG in ci
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2020-05-27 16:30:00 +02:00 |
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Piotr Faba
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2685275952
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switch include off
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2020-05-27 16:24:47 +02:00 |
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Piotr Faba
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c31b03108c
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retry without Exception
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2020-05-27 16:22:56 +02:00 |
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Piotr Faba
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1354ae4063
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add bi config
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2020-05-27 16:19:15 +02:00 |
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James A. Fellows Yates
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d070ed70d1
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Update BWA settings based on feedback
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2020-05-26 11:11:42 +02:00 |
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James A. Fellows Yates
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e31e781f29
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Remove debugging
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2020-05-26 11:07:06 +02:00 |
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Harshil Patel
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5981e5ec27
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Merge pull request #153 from FriederikeHanssen/cfc_scratch
Add scratch = true to avoid writing of intermediate file to /tmp
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2020-05-22 15:48:00 +01:00 |
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James A. Fellows Yates
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ff915ee504
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Update shh.config
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2020-05-12 12:47:59 +02:00 |
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James A. Fellows Yates
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8225e07819
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Condensed base params and added names for debugging
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2020-05-12 12:47:25 +02:00 |
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James A. Fellows Yates
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4814bac1c3
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Fix sub-profiles
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2020-05-12 12:42:42 +02:00 |
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James A. Fellows Yates
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38e9e54932
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Merge pull request #151 from jfy133/master
Add additional custom nf-core/eager params for SHH profile
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2020-05-07 09:25:02 +02:00 |
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James A. Fellows Yates
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cf6e697f0b
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Further update aln based on modifications of EAGER defaults
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2020-05-07 09:16:08 +02:00 |
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James A. Fellows Yates
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d42d7f4146
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Sets the bwa aln parameter to 0.01 which is more commonly used at SHH
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2020-05-04 21:02:16 +02:00 |
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FriederikeHanssen
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d6813d9c39
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Add scratch = true to avoid writing of intermediate file to /tmp
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2020-05-04 17:09:43 +02:00 |
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MaxUlysse
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e6f4d58fa6
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update rnafusion munin specific config
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2020-04-28 17:06:04 +02:00 |
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Adrian
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ad12bd4ad1
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testing automounts
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2020-04-28 16:03:06 +01:00 |
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Harshil Patel
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2300d5a962
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Update genomes.config
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2020-04-09 18:22:41 +01:00 |
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MaxUlysse
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50a44d037b
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better docs and organisation of giles
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2020-04-09 17:02:36 +02:00 |
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Maxime Garcia
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34dc18faf6
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Update uppmax.config
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2020-04-09 11:35:37 +02:00 |
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Adrian Larkeryd
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405801638a
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icr_davros sarek config description
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2020-04-08 11:56:17 +01:00 |
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Adrian Larkeryd
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78be4b358e
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icr_davros igenomes base
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2020-04-08 11:55:16 +01:00 |
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Maxime Garcia
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d1ff87a416
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Merge pull request #145 from bioatlas/master
Adding UPPMAX specific config for ampliseq
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2020-03-31 15:46:21 +02:00 |
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Daniel Lundin
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c8de9be701
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Adding UPPMAX specific config for ampliseq
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2020-03-31 15:17:24 +02:00 |
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MaxUlysse
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db2dd4458b
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Merge remote-tracking branch 'upstream/master' into UPPMAX
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2020-03-30 16:41:08 +02:00 |
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MaxUlysse
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8b570507cd
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update s
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2020-03-30 16:40:11 +02:00 |
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ggabernet
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c81f693f73
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add cfc_dev config
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2020-03-23 17:16:34 +01:00 |
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Olga Botvinnik
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52369ba6ad
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Add AaegL5.0 config
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2020-03-17 16:45:20 -07:00 |
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Maxime Garcia
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123132d89a
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Update munin.config
fix typo
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2020-03-12 17:23:55 +01:00 |
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Phil Ewels
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5a3bdcca5b
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Merge pull request #139 from Emiller88/utd
fix(ganymede): use singularity/2.4.5
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2020-03-11 16:54:01 +00:00 |
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Maxime Garcia
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b6d52fdb89
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Update conf/pipeline/sarek/munin.config
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2020-03-11 15:48:29 +01:00 |
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Maxime Garcia
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0f34d757a9
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Update munin.config
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2020-03-11 15:48:17 +01:00 |
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MaxUlysse
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d24a296a01
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add munin/rnafusion specific config
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2020-03-11 14:02:01 +01:00 |
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MaxUlysse
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dd1ddf864b
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update sarek munin config
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2020-03-11 14:01:28 +01:00 |
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Edmund Miller
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cece853663
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fix(ganymede): use singularity/2.4.5
Our 3.2.1 doesn't work right with snakemake or nextflow
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2020-03-10 21:03:24 -05:00 |
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Edmund Miller
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c42bb07981
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fix: Singularity => singularity
For some reason ours are lowercase
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2020-03-10 09:55:17 -05:00 |
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Edmund Miller
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123c44c56d
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feat: add initial ganymede config
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2020-03-09 16:18:41 -05:00 |
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