Phil Ewels
|
a9aae577ef
|
Merge pull request #215 from Emiller88/ganymede-update
|
2021-03-22 19:18:02 +01:00 |
|
Edmund Miller
|
a6975cdd4e
|
fix(ganymede): large => high
Co-authored-by: drpatelh <drpatelh@users.noreply.github.com>
|
2021-03-22 12:42:56 -05:00 |
|
Edmund Miller
|
34ccce9531
|
fix(ganymede): Add process resources
Trimgalore though it can be a bottom neck, doesn't require the 1 big
memory node we have and can be run on the genomics queue.
|
2021-03-21 21:47:59 -05:00 |
|
Edmund Miller
|
4570718b12
|
fix(ganymede): Add TMPDIR and SINGULARITY_CACHEDIR env variables
|
2021-03-21 21:45:39 -05:00 |
|
Harshil Patel
|
2ce1e2a9cc
|
Create rnaseq.config
|
2021-03-17 12:32:47 +00:00 |
|
Maxime Garcia
|
ec11a9a951
|
Merge pull request #212 from noirot/master
Add IFB config
|
2021-03-16 16:55:38 +01:00 |
|
Noirot Céline
|
e3216ccf79
|
typo
|
2021-03-16 16:00:56 +01:00 |
|
Noirot Céline
|
cc17045914
|
Add institution
|
2021-03-16 15:58:29 +01:00 |
|
Noirot Céline
|
7e9f83ee81
|
Add IFB config
|
2021-03-16 15:54:19 +01:00 |
|
Patrick Hüther
|
a64dfd98c2
|
Merge pull request #209 from phue/cbe_rapid_qos
cbe: add rapid qos
|
2021-03-10 21:03:08 +01:00 |
|
phue
|
da3bd2693d
|
cbe: add rapid qos
and update config url
|
2021-03-10 11:26:01 +01:00 |
|
Alexander Peltzer
|
bb8e82e9c7
|
Merge pull request #208 from maxibor/master
Update shh config after CDAG departure
|
2021-02-17 10:41:13 +01:00 |
|
maxibor
|
286e18b80c
|
update shh config after CDAG departure
|
2021-02-17 10:22:05 +01:00 |
|
Harshil Patel
|
d457699de1
|
Merge pull request #207 from drpatelh/primers
Update links to be consistent for viralrecon genomes raw URLs
|
2021-02-16 13:25:20 +00:00 |
|
drpatelh
|
01a4f8559e
|
Update links to be consistent
|
2021-02-16 13:17:16 +00:00 |
|
Harshil Patel
|
6ffaf922c5
|
Update genomes.config
|
2021-02-16 10:28:32 +00:00 |
|
Alexander Peltzer
|
a4630a926d
|
Merge pull request #206 from marchoeppner/ccga_dx_update
Updating the CCGA DX profile to new storage system
|
2021-02-16 09:46:54 +01:00 |
|
Marc Hoeppner
|
1f2fce00aa
|
Updating the CCGA DX profile to new storage system
|
2021-02-16 09:02:16 +01:00 |
|
Harshil Patel
|
4de0855218
|
Update genomes.config
|
2021-02-15 18:48:03 +00:00 |
|
Harshil Patel
|
76750ad59b
|
Merge pull request #205 from drpatelh/primers
Add ARTIC primer sets to genome config
|
2021-02-15 17:16:13 +00:00 |
|
drpatelh
|
9d500cf679
|
Reorder params
|
2021-02-15 17:02:26 +00:00 |
|
drpatelh
|
f283dfb2dc
|
Add ARTIC primer sets to genome config
|
2021-02-15 16:58:30 +00:00 |
|
James A. Fellows Yates
|
86566ddd3b
|
Merge pull request #204 from jfy133/master
Add a 'big_data' profile for eager @ SHH
|
2021-02-04 15:07:52 +01:00 |
|
James A. Fellows Yates
|
e32f1e46ff
|
Update shh.config
|
2021-02-04 08:13:16 +01:00 |
|
James A. Fellows Yates
|
c515a401c7
|
Update shh.config
|
2021-02-04 08:06:35 +01:00 |
|
James A. Fellows Yates
|
82fe8a04be
|
Update shh.config
|
2021-02-04 08:02:33 +01:00 |
|
James A. Fellows Yates
|
e7ac0bae13
|
Update shh.config
|
2021-02-04 08:00:57 +01:00 |
|
James A. Fellows Yates
|
eb725f9ea3
|
Update shh.config
|
2021-02-03 20:13:09 +01:00 |
|
Alexander Peltzer
|
95791b04a4
|
Merge pull request #203 from oist/draftOISTconfig
Institutional profile for the Okinawa Institute of Science and Technology (OIST)
|
2021-02-02 14:07:03 +01:00 |
|
Charles Plessy
|
1608b36dcf
|
Institutional profile for Okinawa Institute of Science and Technology
|
2021-02-02 17:40:10 +09:00 |
|
Thiseas C. Lamnidis
|
c33cedf4ed
|
Merge pull request #202 from nf-core/TCLamnidis-patch-1
Add debug profile
|
2021-01-26 15:20:56 +01:00 |
|
Thiseas C. Lamnidis
|
713a032a36
|
Add debug profile
which deactivates cleanup of workdir after successful run
|
2021-01-26 15:08:21 +01:00 |
|
James A. Fellows Yates
|
5ba1b01c0c
|
Merge pull request #200 from nf-core/ceh-config
Seg_globe config
|
2021-01-21 13:24:26 +01:00 |
|
James A. Fellows Yates
|
26d164ca74
|
Remove ceh profile for now
|
2021-01-21 13:15:08 +01:00 |
|
James A. Fellows Yates
|
c4604450d8
|
Update seg_globe.md
|
2021-01-21 13:04:12 +01:00 |
|
James A. Fellows Yates
|
7cffcf809b
|
Update main.yml
|
2021-01-21 12:50:14 +01:00 |
|
Åshild J. Vågene
|
765a2e0b7e
|
Update README.md
|
2021-01-21 11:55:00 +01:00 |
|
Åshild J. Vågene
|
8037b73ddd
|
Update nfcore_custom.config
|
2021-01-21 11:52:58 +01:00 |
|
Åshild J. Vågene
|
bcd137225e
|
Update and rename ceh.md to seg_globe.md
|
2021-01-21 11:46:46 +01:00 |
|
Åshild J. Vågene
|
594985f1ee
|
Update and rename ceh.config to seg_globe.config
|
2021-01-21 11:43:34 +01:00 |
|
Åshild J. Vågene
|
ef80452577
|
Update docs/ceh.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2021-01-21 11:16:46 +01:00 |
|
Åshild J. Vågene
|
8fa720b9cc
|
Update conf/ceh.config
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
2021-01-21 11:15:06 +01:00 |
|
James A. Fellows Yates
|
2fd475c339
|
Fix some linting errors
|
2021-01-21 06:30:43 +01:00 |
|
James A. Fellows Yates
|
964cae4ac7
|
Add CEH to CI
|
2021-01-21 06:22:37 +01:00 |
|
Åshild J. Vågene
|
f8973f153a
|
Update ceh.config
|
2021-01-21 00:31:49 +01:00 |
|
Åshild J. Vågene
|
d108666950
|
Update ceh.md
|
2021-01-21 00:30:54 +01:00 |
|
Åshild J. Vågene
|
91594dffea
|
Update ceh.config
|
2021-01-21 00:29:43 +01:00 |
|
Åshild J. Vågene
|
22e6a60db1
|
Update README.md
|
2021-01-21 00:22:13 +01:00 |
|
Åshild J. Vågene
|
a6f316b58b
|
Update README.md
|
2021-01-21 00:21:13 +01:00 |
|
Åshild J. Vågene
|
65831b73ef
|
Create ceh.md
|
2021-01-21 00:17:08 +01:00 |
|