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790 commits

Author SHA1 Message Date
Åshild J. Vågene
bcd137225e
Update and rename ceh.md to seg_globe.md 2021-01-21 11:46:46 +01:00
Åshild J. Vågene
594985f1ee
Update and rename ceh.config to seg_globe.config 2021-01-21 11:43:34 +01:00
Åshild J. Vågene
ef80452577
Update docs/ceh.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2021-01-21 11:16:46 +01:00
Åshild J. Vågene
8fa720b9cc
Update conf/ceh.config
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2021-01-21 11:15:06 +01:00
James A. Fellows Yates
2fd475c339
Fix some linting errors 2021-01-21 06:30:43 +01:00
James A. Fellows Yates
964cae4ac7
Add CEH to CI 2021-01-21 06:22:37 +01:00
Åshild J. Vågene
f8973f153a
Update ceh.config 2021-01-21 00:31:49 +01:00
Åshild J. Vågene
d108666950
Update ceh.md 2021-01-21 00:30:54 +01:00
Åshild J. Vågene
91594dffea
Update ceh.config 2021-01-21 00:29:43 +01:00
Åshild J. Vågene
22e6a60db1
Update README.md 2021-01-21 00:22:13 +01:00
Åshild J. Vågene
a6f316b58b
Update README.md 2021-01-21 00:21:13 +01:00
Åshild J. Vågene
65831b73ef
Create ceh.md 2021-01-21 00:17:08 +01:00
Åshild J. Vågene
8a8f95e364
Update nfcore_custom.config 2021-01-20 23:47:58 +01:00
Åshild J. Vågene
c11c26f15f
Create ceh.config 2021-01-20 23:45:26 +01:00
Patrick Hüther
b63a8b0554
Merge pull request #199 from rbpisupati/cbe-conda
cbe: add conda module as fallback
2021-01-15 13:06:48 +01:00
rbpisupati
9b5ac5c89d added anaconda module for cbe 2021-01-15 12:55:46 +01:00
James A. Fellows Yates
a4c55b3ea9
Fix time limit 0-9 typo 2021-01-06 10:44:12 +01:00
Combiz Khozoie
ea2fd4be94
Merge pull request #197 from combiz/imperial
Added institutional configs for Imperial and Imperial MEDBIO.  Added …
2020-12-18 16:33:17 +00:00
Combiz Khozoie
17cf4e3b35 fixed indents 2020-12-18 15:34:56 +00:00
Combiz Khozoie
3824403b4e removed workDir from Imperial configs 2020-12-18 10:31:36 +00:00
Combiz Khozoie
4bb52358f5 updated Github Actions YML 2020-12-18 10:27:40 +00:00
Combiz Khozoie
a61992d144 Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO 2020-12-18 10:21:26 +00:00
Alexander Peltzer
65e2ff56d8
Merge pull request #195 from marcel-keller/patch-1
change of directory for conda environments
2020-12-09 14:35:00 +01:00
marcel-keller
c9ceaff3b3
change of directory for conda environments
change of directory due to recent changes in our infrastructure
2020-12-09 15:11:21 +02:00
Maxime Garcia
2fb205264e
Merge pull request #192 from arontommi/dev
Documentation for Bianca
2020-12-09 11:09:23 +01:00
emnilsson
8cc2fc5ecb
Merge pull request #193 from emnilsson/master
Modified ampliseq-specific uppmax-config
2020-12-02 13:40:43 +01:00
Alexander Peltzer
99985c658f
Merge pull request #194 from marcel-keller/ebc
Update ebc.config
2020-11-26 14:12:33 +01:00
marcel-keller
5590a9743a
Update ebc.config
queueSize to 64
2020-11-26 15:05:25 +02:00
arontommi
ac108379cd trailing spaces 2020-11-26 13:58:16 +01:00
arontommi
c2c7265518 fix linting errors 2020-11-26 13:47:47 +01:00
Emelie Nilsso
7095101652 Merge branch 'master' of https://github.com/nf-core/configs 2020-11-26 13:43:42 +01:00
Emelie Nilsso
febf38dd8e Removed an old process so that only relevant processes are included 2020-11-26 13:38:47 +01:00
arontommi
6480aef1db typo 2020-11-26 11:41:33 +01:00
arontommi
f84fbb8f89 typo 2020-11-26 11:39:51 +01:00
arontommi
e6bb7a4852 capital names 2020-11-26 11:37:59 +01:00
arontommi
5726ef3456 typo 2020-11-26 11:26:08 +01:00
arontommi
06469901fe typo 2020-11-26 11:24:29 +01:00
arontommi
ebf754bf43 documentation for bianca 2020-11-26 09:53:51 +01:00
Phil Ewels
d134286487
Merge pull request #190 from ewels/uppmax-docs
Better UPPMAX docs
2020-11-26 01:43:47 +01:00
Phil Ewels
e96455e180
Update docs/uppmax.md 2020-11-26 01:43:09 +01:00
Phil Ewels
d9a8009662 Better UPPMAX docs 2020-11-25 22:45:16 +01:00
Emelie Nilsso
d61ed01d2d Updated process names according to ampliseq main.nf 2020-11-25 17:50:30 +01:00
Emelie Nilsso
37e7cfae2c Removed unnecessary code that was used to troubleshoot 2020-11-24 07:14:23 +01:00
Emelie Nilsso
cd59bba83e Merge branch 'master' of https://github.com/nf-core/configs 2020-11-24 07:10:05 +01:00
Emelie Nilsso
c47088cda2 Merge remote-tracking branch 'origin' 2020-11-23 21:34:08 +01:00
Emelie Nilsso
2ea06ffab8 Modified uppmax and ampliseq specific config to fit with the divided preparation of the database 2020-11-23 21:20:36 +01:00
James A. Fellows Yates
f3c7b36e3d
Merge pull request #189 from nf-core/TCLamnidis-patch-1
Move sdag queue specification block in sdag profile
2020-11-18 13:16:54 +01:00
Thiseas C. Lamnidis
71d1ff2226
Add params block to sdag queue
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2020-11-18 13:04:46 +01:00
Thiseas C. Lamnidis
da781907f2
Move sdag queue specification block in sdag profile 2020-11-17 19:45:06 +01:00
Harshil Patel
be9cb33ac1
Merge pull request #188 from andrewfrank/patch-1
Fix parameters in google.md
2020-11-12 17:12:41 +00:00