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143 commits

Author SHA1 Message Date
James A. Fellows Yates
832edaa450
Merge branch 'master' into eva 2021-04-06 17:51:46 +02:00
phue
8fc60e2e70 add config for biohpc_gen 2021-03-29 19:25:58 +02:00
Phil Ewels
8e6223d1bd
Update nfcore_custom.config 2021-03-24 12:36:50 +01:00
Phil Ewels
bfab371c94
Merge branch 'master' into master 2021-03-24 12:36:15 +01:00
Phil Ewels
158402eddf
Update nfcore_custom.config 2021-03-24 12:26:49 +01:00
ameynert
aeb0ffcfde
Spacing fix 
Co-authored-by: Maxime Garcia <maxime.garcia@scilifelab.se>
 2021-03-24 11:26:09 +00:00
Asaf Peer
93bde78faa added JAX conf 2021-03-21 06:47:52 -04:00
Noirot Céline
7e9f83ee81 Add IFB config 2021-03-16 15:54:19 +01:00
ameyner2
cfe13fe6c1 Fixed typo & added singularity tmpdir 2021-03-15 15:42:30 +00:00
ameynert
11e2083fb1
Added eddie profile to nfcore_custom.config list 2021-03-03 09:57:34 +00:00
James Fellows Yates
537f52a640 Add MPI-EVA profile 2021-02-14 17:50:20 +01:00
Charles Plessy
1608b36dcf Institutional profile for Okinawa Institute of Science and Technology 2021-02-02 17:40:10 +09:00
Åshild J. Vågene
8037b73ddd
Update nfcore_custom.config 2021-01-21 11:52:58 +01:00
Åshild J. Vågene
8a8f95e364
Update nfcore_custom.config 2021-01-20 23:47:58 +01:00
Combiz Khozoie
a61992d144 Added institutional configs for Imperial and Imperial MEDBIO. Added institutional pipeline configs for scflow for Imperial and Imperial MEDBIO 2020-12-18 10:21:26 +00:00
lecorguille
c974972585 Add ABiMS - side files 2020-10-23 00:12:02 +02:00
James A. Fellows Yates
65fce5c2a5
Update nfcore_custom.config 2020-09-04 19:52:46 +02:00
Phil Ewels
cd9fbb22dc
Merge pull request #161 from ewels/uct_hpc 
Update UCT hex -> hpc
 2020-06-22 09:18:43 +02:00
Phil Ewels
18a1a319ec More uct_hex references 2020-06-17 15:25:07 +02:00
Phil Ewels
17824d2d62 Merge czbiohub_aws_highpriority profile into czbiohub_aws 2020-06-16 15:20:39 +02:00
Alexander Peltzer
f877644059
Merge branch 'master' into master 2020-05-29 11:43:47 +02:00
Piotr Faba
1354ae4063 add bi config 2020-05-27 16:19:15 +02:00
Adrian Larkeryd
82965d25c8 hostname warning for davros 2020-04-08 11:54:34 +01:00
ggabernet
d02e2b8a36 add cfc_dev and warning for binac and cfc 2020-03-23 17:22:02 +01:00
Edmund Miller
1c62395332
docs(utd_ganymede): add initial documentation 2020-03-09 20:07:46 -05:00
marcel-keller
edc6a6aa87
Update nfcore_custom.config 2020-03-09 16:35:45 +02:00
Evan Floden
d8ad376f71
Merge branch 'master' into master 2020-03-06 10:29:50 +00:00
Alexander Peltzer
59a787b179
Merge pull request #122 from marchoeppner/ccga-config 
Removing old CCGA profile from docs and linting
 2020-03-06 11:17:08 +01:00
Evan Floden
8a9d3ad8a0 First commit of Google Cloud config 2020-03-06 05:47:29 +00:00
Adrian Larkeryd
02d8b81af4 adding icr_davros as profiles 2020-03-04 16:02:11 +00:00
Phil Ewels
46b08c82e2 Remove params.custom_config_base from nf-core/configs 2020-02-27 11:53:38 +01:00
Marc Hoeppner
6c5a5c8bcb Removing old CCGA profile from docs and linting 
Removing CCGA profile from master config

Removing CCGA profile from master config
 2020-02-24 12:16:33 +01:00
marchoeppner
0830203b70 Adding new CCGA Med Cluster to profiles 
Updating README and fixing linting errors in CCGA_MED profile

Fixing order in profile queue and removed leading slash from readme for ccga profile docs

Fixing order in profile queue and removed leading slash from readme for ccga profile docs
 2020-02-11 11:12:51 +01:00
Maxime Garcia
9497b78149
Merge pull request #100 from MaxUlysse/UPPMAX 
Improve UPPMAX configs
 2019-12-06 10:52:44 +01:00
phue
fa777180e6 cbe: map hostname 2019-12-05 23:46:25 +01:00
Maxime Garcia
78826c9d4e
Merge branch 'master' into UPPMAX 2019-12-05 12:52:34 +01:00
jfy133
54dafbcfa3 Condensing SHH profiles following https://github.com/nf-core/configs/pull/100 2019-12-05 12:09:11 +01:00
MaxUlysse
a79dfdf223 remove uppmax_devel profile 2019-12-05 12:03:04 +01:00
James A. Fellows Yates
c725c71e4d
Merge branch 'master' into master 2019-11-26 20:34:42 +01:00
jfy133
e1c8c86d70 Updated core config 2019-11-26 20:26:59 +01:00
Alexander Peltzer
23f9fd2d73
Merge branch 'master' into master 2019-11-26 14:20:36 +01:00
Alexander Peltzer
9caf9821c9
Use strip 2019-11-26 14:04:58 +01:00
Alexander Peltzer
cb876594a3
Proper user tests now :-) 2019-11-26 13:57:32 +01:00
Noirot Céline
ed4436c1a6
Merge branch 'master' into master 2019-11-25 16:24:12 +01:00
noirot
42d968fd2a add genotoul in nfcore_custom 2019-11-25 16:23:25 +01:00
MaxUlysse
08a6b74825 add new profile to be shared: awsbatch 2019-11-19 14:16:06 +01:00
Alexander Peltzer
3b6c9d0360
Fix denbi docs 2019-11-11 12:28:45 +01:00
phue
5a9dbe5d7c MENDEL is no more 
the cluster is no longer operational, was replaced by CBE
 2019-10-28 14:11:34 +01:00
Anthony Bretaudeau
1f2786c78f add genouest cluster 2019-10-16 18:15:04 +02:00
phue
5e257e7e9a add cbe profile 2019-09-22 16:45:09 +02:00
Martin Proks
da2a9047b0
fix: added kraken to the list (#64) 2019-08-05 14:59:36 +02:00
drpatelh
e0c684ee8f Aarrrgh pulling configs from master 2019-07-31 23:39:42 +01:00
drpatelh
a692ded933 Remove workDir in czbiohub 2019-07-31 23:30:51 +01:00
drpatelh
7ee70fb742 Add in uppmax-devel 2019-07-31 22:52:20 +01:00
drpatelh
0326b56038 Add czbiohub back in 2019-07-31 22:48:22 +01:00
drpatelh
f3e61fdd66 Add prince back in 2019-07-31 22:40:43 +01:00
drpatelh
0f6802a7c8 Add hebbe back in 2019-07-31 22:37:11 +01:00
drpatelh
a496bfaeef Remove uppmax_devel 2019-07-31 22:33:49 +01:00
drpatelh
70919d0dd3 Remove more configs 2019-07-31 22:28:03 +01:00
drpatelh
8be2897961 Remove problematic configs 2019-07-31 22:27:37 +01:00
drpatelh
daf1b9dcd2 Fix type in uppmax-devel 2019-07-31 22:09:30 +01:00
drpatelh
840a97ed68 Clean up and alphabetasize 2019-07-31 21:52:16 +01:00
Remi Planel
1c0d596582 Merge remote-tracking branch 'upstream/master' 2019-07-30 16:15:20 +02:00
marchoeppner
b31db18dfb Adding config file for CCGA dx cluster 2019-07-29 12:08:07 +02:00
Remi Planel
1cb132a457 Define a profile for the Pasteur config 2019-07-24 11:32:25 +02:00
Olga Botvinnik
474e98daaf
Merge branch 'master' into olgabot/czb-update 2019-07-09 16:02:25 -07:00
Olga Botvinnik
069963ff8a Make czbiohub_aws_highpriority only set the AWS Batch queue and nothing else 2019-07-03 16:01:47 -07:00
Olga Botvinnik
6a2d2003f0 Add high priority AWS batch queue to CZBiohub AWS 2019-07-01 09:25:46 -07:00
Olga Botvinnik
cfcb533b95 Add czbiohub_aws to list of configs" 2019-06-25 19:02:49 -07:00
Olga Botvinnik
268e411d10 Add czbiohub_aws to list 2019-06-05 14:42:15 -07:00
Tobias Schraink
51c2a54399 added nyu prince and bigpurple configs 2019-04-17 16:59:38 -04:00
Harshil Patel
26c101a5ab
Alphabetical order 2019-03-13 16:53:30 +00:00
Harshil Patel
1843b2218c
Update nfcore_custom.config 2019-03-13 16:52:57 +00:00
Harshil Patel
857b0565c2
Update nfcore_custom.config 2019-03-13 16:51:45 +00:00
Phil Ewels
d0ca05a221 ; 2019-03-13 17:33:23 +01:00
Phil Ewels
1191863e1c Removed params.config_profile_name, added params.hostnames 2019-03-13 17:19:34 +01:00
Sven Fillinger
1dc523d726 Removes test config 2019-03-08 10:37:27 +01:00
Sven F
4e1cb46dc5
Update nfcore_custom.config 2019-03-06 20:22:45 +01:00
Sven F
23c05308de
Merge branch 'master' into dev 2019-03-06 19:54:32 +01:00
drpatelh
53d56310bb Added conf folder to paths 2019-03-06 18:14:45 +00:00
Sven Fillinger
638f986f34 Adds profile integration tests 2019-03-06 17:42:14 +01:00
Phil Ewels
6daf76f47d Hotfix for breaking pipelines that don't already support params.custom_config_base 2019-03-06 17:03:13 +01:00
Sven F
ad47005fb6
Update nfcore_custom.config 
Co-Authored-By: apeltzer <apeltzer@users.noreply.github.com>
 2019-03-06 13:13:52 +01:00
Alexander Peltzer
20deaf3b46 Provide fix for online issues 2019-03-06 12:59:54 +01:00
Alexander Peltzer
8ebcfa26a9
Update nfcore_custom.config 
Fix mini typo
 2019-03-06 08:21:34 +01:00
Phil Ewels
9fb5715c4c Added support for new params.custom_config_base option 2019-03-05 16:12:39 +01:00
Martin Proks
548c8bca3f
Updated munin doc and configuration 2019-01-10 15:46:16 +01:00
Alexander Peltzer
d633cc87d0 Add SHH to config available 2019-01-03 16:03:45 +01:00
phue
5c609859c5 add config for MENDEL cluster 2018-12-04 16:58:33 +01:00
Harshil Patel
19c66f002b
Update nfcore_custom.config 2018-11-26 23:40:11 +00:00
Harshil Patel
d1f10bba3e
Update nfcore_custom.config 2018-11-26 22:49:03 +00:00
Phil Ewels
e38e9327f4 Some tidying 2018-11-26 17:32:06 +01:00
drpatelh
1bf45362e5 Added custom profiles 2018-11-23 16:33:22 +00:00