Cedric Arisdakessian
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32cdea4b59
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documentation for mana config
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2022-10-03 03:38:48 +00:00 |
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Bruno Grande
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735df9ef76
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Merge branch 'master' into bgrande/sage-improve-downloads
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2022-09-26 10:22:27 -07:00 |
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Patrick Hüther
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51ae760889
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Merge pull request #413 from phue/biohpc_charliecloud_patch
biohpc_gen: update required modules
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2022-09-25 23:28:04 +02:00 |
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AdrijaK
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798d845a0d
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run prettier
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2022-09-22 14:21:02 +02:00 |
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Adrija Kalvisa
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7959b14385
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Merge branch 'nf-core:master' into master
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2022-09-22 13:15:32 +02:00 |
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Patrick Hüther
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85aa6adeed
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Merge branch 'master' into biohpc_charliecloud_patch
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2022-09-18 12:52:33 +02:00 |
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Bruno Grande
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8bb9361359
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Improve reliability of file transfers
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2022-09-17 10:14:04 -07:00 |
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James A. Fellows Yates
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ec638e62de
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Apply suggestions from code review
Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
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2022-09-15 09:10:29 +02:00 |
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James Fellows Yates
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c0effc0366
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Add HKI profile files
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2022-09-14 15:34:27 +02:00 |
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lquayle88
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be356eb400
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Ran prettier on docs/sbc_sharc.md
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2022-09-14 10:24:56 +01:00 |
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lquayle88
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32403b6222
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Updated pipeline config docs for atacseq, chipseq and rnaseq
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2022-09-14 08:46:11 +01:00 |
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lquayle88
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91bfa7341f
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Made changes requested for PR
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2022-09-14 08:42:40 +01:00 |
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Lewis Quayle
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61ae463606
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Updated sbc_sharc.md
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2022-09-13 17:13:57 +01:00 |
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lquayle88
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a9b62c53e0
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Added global institutional and pipeline configs for sbc_sharc
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2022-09-13 17:02:44 +01:00 |
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phue
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b20f28a3c9
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biohpc_gen: load charliecloud from lrz software tree and remove conda fallback
the biohpc_gen specific software tree is less maintained and outdated
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2022-09-05 11:25:33 +02:00 |
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Bruno Grande
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80831358f9
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Merge branch 'master' into bgrande/sage-aws
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2022-09-01 13:21:36 -07:00 |
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SPearce
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a142ad7eae
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Added link to Sarek specific documentation
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2022-09-01 13:55:08 +01:00 |
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Simon Pearce
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14a97ad0e8
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Merge branch 'master' into crukmi
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2022-09-01 10:07:24 +01:00 |
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ameynert
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28e59e38b4
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Run prettier
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2022-09-01 09:28:05 +01:00 |
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Kalayanee Chairat
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700f14d828
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Merge pull request #1 from nf-core/master
Merging from master
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2022-09-01 15:07:43 +07:00 |
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Simon Pearce
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864da0b5be
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Merge branch 'master' into crukmi
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2022-08-31 18:19:47 +01:00 |
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Bruno Grande
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9a37404a04
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Merge branch 'master' into bgrande/sage-aws
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2022-08-31 09:22:07 -07:00 |
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Bruno Grande
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c883723559
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Simplify resource adjustments
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2022-08-31 09:10:30 -07:00 |
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Annick Renevey
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0851903f66
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include new config in pipeline configs file
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2022-08-31 14:19:07 +02:00 |
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Austyn Trull
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90f638d376
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Updating the cheaha documentation to clarify that /data/temporary-scratch/atrull will be used as storage for files that would normally go into one of the temporary locations when using Singularity
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2022-08-29 10:47:46 -05:00 |
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Bruno Grande
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9c8cb71bc7
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Merge branch 'master' into bgrande/sage-aws
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2022-08-25 16:29:20 -07:00 |
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Bruno Grande
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317e5a16cb
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Improve AWS-related config for Sage profile
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2022-08-25 16:24:52 -07:00 |
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kalayaneech
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93c4ba67a0
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adding adcra configuration
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2022-08-25 16:17:09 +07:00 |
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SPearce
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d0662a3acb
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Ran prettier
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2022-08-15 09:33:30 +01:00 |
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SPearce
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a97b887d93
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Written a help file
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2022-08-12 16:57:04 +01:00 |
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SPearce
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0bfedde296
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Initial attempt at a CRUKMI config file
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2022-08-12 15:43:22 +01:00 |
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Gwenna Breton
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0e4f2b40d3
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Added email of IT group
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2022-08-08 16:14:17 +02:00 |
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Gwenna Breton
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2740b5efbf
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Update docs/medair.md
Fixed typo
Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
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2022-08-08 16:08:05 +02:00 |
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Gwenna Breton
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648025c1ce
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Clarified where to store singularity images
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2022-08-08 16:04:21 +02:00 |
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Gwenna Breton
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6aa78833c3
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Merge branch 'master' into medair
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2022-08-01 16:46:55 +02:00 |
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Matthieu Muffato
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dda1d810b1
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Latest stable version (rather than an edge one)
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2022-07-20 14:35:39 +01:00 |
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Matthieu Muffato
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1ee20f0bb0
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2 cores should be enough for the nextflow manager itself
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2022-07-20 14:35:22 +01:00 |
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Matthieu Muffato
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60dc451569
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The oversubscribed queue is recommended for workflow managers
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2022-07-20 14:34:59 +01:00 |
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Matthieu Muffato
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1f1a9ac5f0
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ISG provide the module, not the pathogen informatics team
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2022-07-20 14:34:25 +01:00 |
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Matthieu Muffato
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2aad355fbf
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The config doesn't mandate Singularity any more (Conda is fine too)
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2022-07-20 14:32:43 +01:00 |
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Priyanka Surana
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fd87fbcb9d
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Sanger profile update
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2022-07-20 13:22:51 +01:00 |
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qlr900
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ff55ec67b4
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update to current java+nextflow module combination
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2022-07-07 14:30:48 +02:00 |
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Gwenna Breton
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6b9cdc8ef3
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Added info about Sentieon singularities
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2022-07-07 14:24:15 +02:00 |
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Gwenna Breton
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746db14d47
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Update medair.md
- updated text about storing singularity images
- updated text about using profiles
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2022-07-07 11:42:46 +02:00 |
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qlr900
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d19d6c0ae0
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update wording
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2022-07-06 16:19:16 +02:00 |
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qlr900
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4f98876429
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add export to NXF_SINGULARITY_CACHEDIR
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2022-07-06 13:35:10 +02:00 |
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qlr900
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f45b8645f6
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update wording
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2022-07-06 13:05:13 +02:00 |
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qlr900
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8a781b6bb2
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modify alternative module load
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2022-07-06 12:54:07 +02:00 |
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qlr900
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7ac08a1015
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add alternative module load
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2022-07-06 12:42:14 +02:00 |
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Gwennid
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96fd2bf217
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Fixed formatting
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2022-07-06 11:42:05 +02:00 |
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