Michael L Heuer
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23f9284aae
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Added dsh-bio split-bed as dsh_splitbed
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2021-01-21 16:34:49 -06:00 |
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Michael L Heuer
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eb6408f3dc
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Added dsh-bio filter-bed as dsh_filterbed
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2021-01-21 15:16:20 -06:00 |
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Edmund Miller
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daa25b9329
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Merge branch 'preseq_test'
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2021-01-15 17:41:13 -06:00 |
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Edmund Miller
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86850dc8a4
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style: Remove old comment
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-15 10:32:20 -06:00 |
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Edmund Miller
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4f0c34bbfb
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ci: Bump nextflow version
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-15 10:32:20 -06:00 |
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sruthipsuresh
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7729fee5a9
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Added gffread and gff3 file for testing
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2021-01-15 10:32:20 -06:00 |
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Edmund Miller
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d7a78fa127
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style: Fix indent
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-15 10:28:11 -06:00 |
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sruthipsuresh
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b95bd37780
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Added ucsc module
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2021-01-15 10:28:11 -06:00 |
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Harshil Patel
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27dbe8b52a
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Merge pull request #115 from Functional-Genomics-Lab/stringtie_test
Added testing for Stringtie
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2021-01-15 16:09:39 +00:00 |
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Edmund Miller
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53830e05c7
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test: Fix typo
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-15 10:07:44 -06:00 |
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Edmund Miller
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fe39c7822f
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style: Fix indentation
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2021-01-15 10:01:02 -06:00 |
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Edmund Miller
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b9e8f959b3
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style: Standardize process names
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-15 10:00:40 -06:00 |
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Edmund Miller
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a3ca757f4e
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Update .github/workflows/phantompeakqualtools.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-15 09:38:13 -06:00 |
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sruthipsuresh
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ec91171152
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Corrected naming to ensure test checks work
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2021-01-15 09:38:13 -06:00 |
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sruthipsuresh
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5a1c1f90e5
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removed md5sums for pdf, rdata
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2021-01-15 09:38:13 -06:00 |
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sruthipsuresh
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3f814d1e2f
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Workflow and md5sums added
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2021-01-15 09:38:13 -06:00 |
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sruthipsuresh
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269d9888fe
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Corrected bash error, tested process
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2021-01-15 09:38:13 -06:00 |
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Sruthi Suresh
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b7435b0159
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added test file for phantompeakqualtools for testing
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2021-01-15 09:38:13 -06:00 |
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sruthipsuresh
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09d56efe12
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Fixed with mr file for size issues
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2021-01-14 02:12:57 -06:00 |
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sruthipsuresh
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00ef1d3863
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Changed input to bed files
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2021-01-15 16:52:17 -06:00 |
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Edmund Miller
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4181a7356c
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Remove -bam flag
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-15 09:39:32 -06:00 |
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sruthipsuresh
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2d2f15af0f
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Delete phantompeakqualtools.yml
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2021-01-13 21:23:24 -06:00 |
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sruthipsuresh
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a66618be98
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Delete tests/software/phantompeakqualtools directory
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2021-01-13 21:23:02 -06:00 |
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sruthipsuresh
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6f3cbfcd9a
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Fixed test.yml
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2021-01-12 18:14:28 -06:00 |
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sruthipsuresh
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b297f7aea1
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Fixed test and removed phantompeak tests
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2021-01-12 18:04:12 -06:00 |
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sruthipsuresh
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7c88cf4f67
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Finished module with md5sums
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2021-01-12 09:29:31 -06:00 |
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sruthipsuresh
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0a04c96357
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Added module, TODO data
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2021-01-12 09:13:37 -06:00 |
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sruthipsuresh
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3b581d1912
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Updated test.yml
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2021-01-12 08:56:11 -06:00 |
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sruthipsuresh
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a2faeb703f
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Fixed md5sums
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2021-01-12 08:50:20 -06:00 |
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sruthipsuresh
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cb39fcb915
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Added preseq module and workflow
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2021-01-12 08:41:09 -06:00 |
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sruthipsuresh
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a812dceb23
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Updated bam input in module
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2021-01-12 08:32:29 -06:00 |
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sruthipsuresh
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e1a3d1b18a
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Corrected naming to ensure test checks work
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2020-12-21 19:53:03 -06:00 |
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sruthipsuresh
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5319eabbc5
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removed md5sums for pdf, rdata
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2020-12-19 06:09:04 -06:00 |
|
sruthipsuresh
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522b896534
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Workflow and md5sums added
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2020-12-19 06:09:04 -06:00 |
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sruthipsuresh
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8c088d473b
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Corrected bash error, tested process
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2020-12-19 06:09:04 -06:00 |
|
Sruthi Suresh
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10d0058a1a
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added test file for phantompeakqualtools for testing
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2020-12-19 06:09:04 -06:00 |
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Harshil Patel
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c98f9284a2
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Merge pull request #89 from KevinMenden/master
Add bowtie module
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2020-12-18 14:56:29 +00:00 |
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kevinmenden
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8f75bac67e
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update test.bam md5sums
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2020-12-18 11:16:58 +01:00 |
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kevinmenden
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32f6191ff3
|
editorconfig
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2020-12-18 11:11:19 +01:00 |
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kevinmenden
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db0b631906
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removed index from test output
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2020-12-18 11:06:02 +01:00 |
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kevinmenden
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299a3fa07e
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adding .index back
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2020-12-18 10:58:37 +01:00 |
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kevinmenden
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0be13edc52
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next try at editorconfig
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2020-12-18 09:52:38 +01:00 |
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kevinmenden
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07f0a2476a
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fixed linting errors
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2020-12-18 09:50:05 +01:00 |
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kevinmenden
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0eb20c14bf
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fixed unaligned output
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2020-12-18 09:20:35 +01:00 |
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kevinmenden
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1c89c9717b
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Merge branch 'master' of https://github.com/KevinMenden/modules
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2020-12-18 09:16:17 +01:00 |
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kevinmenden
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f840325ead
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added unaligned output
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2020-12-18 09:14:40 +01:00 |
|
Kevin Menden
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7805d25cc5
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Update software/bowtie/align/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2020-12-18 09:13:48 +01:00 |
|
Kevin Menden
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a7f1ff29d7
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Update software/bowtie/align/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2020-12-18 09:13:42 +01:00 |
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Kevin Menden
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dc4108fd9b
|
Update software/bowtie/align/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2020-12-18 09:13:35 +01:00 |
|
Kevin Menden
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41329b8982
|
Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2020-12-18 08:16:18 +01:00 |
|