Carpanzano
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a700a9c15e
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Merge branch 'firstbranch' of github.com:carpanz/modules into firstbranch
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2022-05-05 13:52:45 +02:00 |
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Carpanzano
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9083d3bb3d
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integrating suggestions from PR comments, including recovery of tests for kronadb and more detailed explanation of input database in yml file
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2022-05-05 13:51:41 +02:00 |
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MaxUlysse
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40dd662fd2
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update ensemblvep and snpeff modules
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2022-05-05 12:57:14 +02:00 |
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James A. Fellows Yates
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e60c6f9bfd
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Merge branch 'master' into firstbranch
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2022-05-05 10:57:27 +02:00 |
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Carpanzano
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204dfba2d8
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fixing ktupdatetaxonomy/meta.yml as suggested in PR
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2022-05-05 10:51:22 +02:00 |
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Mahesh Binzer-Panchal
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865ad3447a
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Update meta.yml output files
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2022-05-05 08:23:54 +00:00 |
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Mahesh Binzer-Panchal
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58ea709f7f
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Merge branch 'master' into busco
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2022-05-05 09:34:14 +02:00 |
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James A. Fellows Yates
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6393a085c5
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Apply suggestions from code review
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2022-05-05 08:23:51 +02:00 |
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JIANHONG OU
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29ee72c693
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update meta.yml and remove the cleanup step.
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2022-05-04 15:37:12 -04:00 |
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JIANHONG OU
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e9c82a5f48
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Update modules/motus/downloaddb/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-04 15:29:06 -04:00 |
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James A. Fellows Yates
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35b5ba673f
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Merge branch 'master' into motus_downloaddb
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2022-05-04 20:58:08 +02:00 |
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James A. Fellows Yates
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ec5bada3fc
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Update modules/motus/downloaddb/meta.yml
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2022-05-04 20:55:16 +02:00 |
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Lauri Mesilaakso
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e757966566
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-04 18:41:36 +03:00 |
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Carpanzano
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a6086f549d
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recovered process name
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2022-05-04 17:28:24 +02:00 |
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Carpanzano
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8b1711d8a1
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recovering old module name
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2022-05-04 16:38:10 +02:00 |
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Simone Carpanzano
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162f8edf54
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Merge branch 'master' into firstbranch
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2022-05-04 16:35:25 +02:00 |
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Carpanzano
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6b8ca501ed
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fixing suggestions from PR
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2022-05-04 16:34:52 +02:00 |
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Nicolas Vannieuwkerke
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f875aec46b
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Split the module into two parts
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2022-05-04 15:29:48 +02:00 |
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Mahesh Binzer-Panchal
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5986a3efbf
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Merge branch 'master' into busco
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2022-05-04 15:09:54 +02:00 |
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Nicolas Vannieuwkerke
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505ab03803
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fixed a description
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2022-05-04 14:14:53 +02:00 |
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Nicolas Vannieuwkerke
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177a7e49f2
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Fixed a linting issue
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2022-05-04 14:06:42 +02:00 |
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Nicolas Vannieuwkerke
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000b8ee2e0
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Merge branch 'new-module-hap.py' of github.com:nvnieuwk/modules into new-module-hap.py
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2022-05-04 14:05:23 +02:00 |
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Nicolas Vannieuwkerke
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065a5d6a7f
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Fixed a linting issue
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2022-05-04 14:05:21 +02:00 |
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nvnieuwk
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c9808cb97f
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Merge branch 'master' into new-module-hap.py
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2022-05-04 14:01:02 +02:00 |
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Nicolas Vannieuwkerke
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37338ecee3
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Finished the module
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2022-05-04 14:00:02 +02:00 |
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Ramprasad Neethiraj
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6541e151bc
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Merge branch 'master' into feat/update_cnvpytor
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2022-05-04 13:54:46 +02:00 |
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Mahesh Binzer-Panchal
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73a8df9522
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Fix no genes found test and update test.yml
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2022-05-04 11:52:42 +00:00 |
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Nicolas Vannieuwkerke
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c517ce9b4d
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Added the module and some simple testing
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2022-05-04 13:42:12 +02:00 |
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Mahesh Binzer-Panchal
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8df20218bf
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Add more tests and capture summaries
Co-authored-by: Jill V. Hagey, PhD <jvhagey@gmail.com>
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2022-05-04 09:22:43 +00:00 |
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Mahesh Binzer-Panchal
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3bb0711b06
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Merge branch 'master' into busco
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2022-05-04 09:15:46 +02:00 |
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Lauri Mesilaakso
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530b5ac661
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-04 09:53:46 +03:00 |
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Chris Cheshire
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79e64cdd1f
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Merge branch 'master' into expected_error_fix
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2022-05-03 22:21:28 +01:00 |
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JIANHONG OU
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dc59ad0bf5
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fix the version issue.
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2022-05-03 12:27:39 -04:00 |
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Jill V. Hagey, PhD
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f02cd618b8
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Update meta.yml
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2022-05-03 10:09:19 -04:00 |
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Lauri Mesilaakso
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12f79c2101
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 17:03:02 +03:00 |
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Mahesh Binzer-Panchal
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1c54c0b1ae
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Apply suggestions from code review
Co-authored-by: Matthieu Muffato <cortexspam-github@yahoo.fr>
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2022-05-03 16:02:11 +02:00 |
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Matthieu Muffato
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6351ec745e
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Update contributor list
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2022-05-03 14:56:27 +01:00 |
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Matthieu Muffato
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4be754b008
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It's a file, not a directory
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2022-05-03 14:53:17 +01:00 |
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Mahesh Binzer-Panchal
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636abad8f1
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Merge branch 'master' into busco
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2022-05-03 15:38:25 +02:00 |
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Nicolas Vannieuwkerke
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96d4a31cc1
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Moved the BED file to the main tuple
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2022-05-03 15:31:05 +02:00 |
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Mahesh Binzer-Panchal
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5f4781adaa
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Merge branch 'master' into busco
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2022-05-03 15:27:10 +02:00 |
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Mahesh Binzer-Panchal
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57db28386e
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Support batch fasta analysis
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2022-05-03 13:26:49 +00:00 |
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ljmesi
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034352dbbf
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Merge branch 'add_compression_to_bam2fq' of https://github.com/Genomic-Medicine-Linkoping/modules into add_compression_to_bam2fq
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2022-05-03 15:18:12 +02:00 |
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ljmesi
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5510ea39fe
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Test --no-name to solve inconsistent checksums
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2022-05-03 15:18:09 +02:00 |
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Ramprasad Neethiraj
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26311aba2a
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fix minor errors
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2022-05-03 15:04:37 +02:00 |
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Ramprasad Neethiraj
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be085c0173
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Merge branch 'master' of https://github.com/nf-core/modules into feat/update_cnvpytor
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2022-05-03 14:55:42 +02:00 |
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Ramprasad Neethiraj
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19cfb4e951
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update meta files
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2022-05-03 14:53:56 +02:00 |
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Ramprasad Neethiraj
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3efa931bf6
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view
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2022-05-03 14:26:46 +02:00 |
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Ramprasad Neethiraj
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829c15c98b
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partition
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2022-05-03 14:26:34 +02:00 |
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Ramprasad Neethiraj
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7cc47f6ba6
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importrd
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2022-05-03 14:25:20 +02:00 |
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Ramprasad Neethiraj
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07e026054a
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histogram
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2022-05-03 14:24:54 +02:00 |
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Ramprasad Neethiraj
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2990dc8357
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callcnv module
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2022-05-03 14:20:05 +02:00 |
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Lauri Mesilaakso
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a65e76e3dd
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 14:30:54 +03:00 |
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Chris Cheshire
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6f35537d40
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Merge branch 'master' into expected_error_fix
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2022-05-03 12:21:51 +01:00 |
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Chris Cheshire
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829183ee84
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Merge branch 'master' into rp3-add-shigatyper
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2022-05-03 12:16:54 +01:00 |
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Chris Cheshire
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6015478b72
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Merge branch 'master' into add-slimfastq
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2022-05-03 12:11:19 +01:00 |
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Chris Cheshire
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d7fb969a74
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Merge branch 'master' into rp3-add-shigatyper
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2022-05-03 12:10:23 +01:00 |
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Chris Cheshire
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61f68913fe
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Merge branch 'master' into expected_error_fix
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2022-05-03 11:49:35 +01:00 |
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Chris Cheshire
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768073be63
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bowtie2|Added support for large indexes
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2022-05-03 11:46:19 +01:00 |
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Mahesh Binzer-Panchal
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012f085378
|
Prettier
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2022-05-03 09:19:39 +00:00 |
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Mahesh Binzer-Panchal
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9eff38ff94
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Update meta.yml
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2022-05-03 09:15:45 +00:00 |
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Mahesh Binzer-Panchal
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ddbe6e8f40
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Merge branch 'master' into busco
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2022-05-03 10:48:03 +02:00 |
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Mahesh Binzer-Panchal
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9a72548ee1
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Update busco module
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2022-05-03 08:42:56 +00:00 |
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Lauri Mesilaakso
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6367c6a1ad
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 11:41:25 +03:00 |
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nvnieuwk
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f85787b19e
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Merge branch 'master' into vardict-java
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2022-05-03 10:17:04 +02:00 |
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nvnieuwk
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8187641280
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:45 +02:00 |
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nvnieuwk
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11c6faf433
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:36 +02:00 |
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nvnieuwk
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01085b3e09
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:30 +02:00 |
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nvnieuwk
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1609dfc96d
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:20 +02:00 |
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nvnieuwk
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3cdbdf50fc
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:14 +02:00 |
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nvnieuwk
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2dff193b54
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:15:59 +02:00 |
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nvnieuwk
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7c89af359c
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:15:51 +02:00 |
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Nicolas Vannieuwkerke
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49ba3adbde
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Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java
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2022-05-03 10:15:33 +02:00 |
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Nicolas Vannieuwkerke
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d33253513f
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put the version on top of the file
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2022-05-03 10:15:30 +02:00 |
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Lauri Mesilaakso
|
773e6f8e93
|
Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 11:13:55 +03:00 |
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nvnieuwk
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278d41b6bf
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Merge branch 'master' into vardict-java
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2022-05-03 09:59:05 +02:00 |
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ljmesi
|
5503903457
|
Add compression for output fastq file
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2022-05-03 09:46:04 +02:00 |
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Ramprasad Neethiraj
|
6f787aea71
|
Merge branch 'master' into adding_stub_to_modules
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2022-05-03 09:43:16 +02:00 |
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Lauri Mesilaakso
|
77054795fb
|
Merge branch 'master' into add_handling_of_alternative_fn_suffix_for_metaphlan3
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2022-05-03 09:38:51 +03:00 |
|
Nicolas Vannieuwkerke
|
71c5d21374
|
ran prettier
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2022-05-03 08:34:12 +02:00 |
|
Nicolas Vannieuwkerke
|
9127f92ddd
|
Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java
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2022-05-03 08:29:50 +02:00 |
|
Nicolas Vannieuwkerke
|
9a10e5beb5
|
Added the missing inputs in meta.yml + correct notation
|
2022-05-03 08:29:46 +02:00 |
|
Matthias De Smet
|
1687bfcb85
|
Merge branch 'master' into add-slimfastq
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2022-05-03 08:22:49 +02:00 |
|
Matthias De Smet
|
a67c06af81
|
Merge branch 'master' into vardict-java
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2022-05-03 08:22:19 +02:00 |
|
Nicolas Vannieuwkerke
|
d8782d7976
|
Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java
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2022-05-03 08:20:13 +02:00 |
|
Nicolas Vannieuwkerke
|
b8a59c2b17
|
Fixed version annotation
|
2022-05-03 08:20:10 +02:00 |
|
Moritz E. Beber
|
16aa3915e3
|
feat: add module for slimfastq
|
2022-05-02 23:16:59 +02:00 |
|
Ramprasad Neethiraj
|
3194729f82
|
Merge branch 'master' into adding_stub_to_modules
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2022-05-02 18:31:55 +02:00 |
|
JIANHONG OU
|
5735f515f8
|
fix a typo in version export.
|
2022-05-02 12:25:48 -04:00 |
|
Sateesh Peri
|
c56b371713
|
Merge branch 'master' into srst2/srst2
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2022-05-02 12:13:11 -04:00 |
|
Carpanzano
|
c07ae8c483
|
fixed lint in ktimporttaxonomy
|
2022-05-02 17:47:45 +02:00 |
|
Simone Carpanzano
|
3d9c8a6bb1
|
Merge branch 'master' into firstbranch
|
2022-05-02 17:43:33 +02:00 |
|
jvhagey
|
24dc2d2113
|
added tests
|
2022-05-02 11:30:19 -04:00 |
|
Jasmin F
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235944f797
|
Merge branch 'master' into antismash_db_output
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2022-05-02 17:11:51 +02:00 |
|
Jasmin F
|
8db0b754c0
|
Fix commented-out command
|
2022-05-02 16:56:39 +02:00 |
|
jasmezz
|
6a9f2077cf
|
Fix unbound variable crash
|
2022-05-02 16:41:59 +02:00 |
|
Lucpen
|
62c6123ec4
|
fix gatk4_mutect2 test by changing main.nf
|
2022-05-02 15:11:57 +02:00 |
|
JIANHONG OU
|
250d64dfde
|
fix the typo of motus_downloadb.
|
2022-05-02 08:52:54 -04:00 |
|
JIANHONG OU
|
b14f30936e
|
Merge branch 'nf-core:master' into motus_downloaddb
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2022-05-02 08:42:09 -04:00 |
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JIANHONG OU
|
31dd31079d
|
update teh versions.yml
|
2022-05-02 08:41:41 -04:00 |
|