Mahesh Binzer-Panchal
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4acbf9d356
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Merge pull request #1641 from mahesh-panchal/genomescope2
Genomescope2 module
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2022-05-13 11:37:49 +02:00 |
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Mahesh Binzer-Panchal
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00826dc2e9
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Merge branch 'master' into genomescope2
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2022-05-13 11:28:47 +02:00 |
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Mahesh Binzer-Panchal
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5df0bcf1be
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Update tests/modules/genomescope2/test.yml
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
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2022-05-13 11:27:42 +02:00 |
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Matthias De Smet
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fc987d5fcd
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Merge pull request #1650 from nvnieuwk/update-module-rtgtools/vcfeval
Added memory allocation to VCFeval
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2022-05-13 10:55:32 +02:00 |
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Nicolas Vannieuwkerke
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6fa1c8089a
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Added memory allocation to VCFeval
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2022-05-13 10:03:20 +02:00 |
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Harshil Patel
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be0f022053
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Merge pull request #1648 from nf-core/refactor-sra-fastq
refactor: rename and update subworkflow
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2022-05-12 11:26:15 +01:00 |
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Moritz E. Beber
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74b11ccc44
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refactor: rename and update subworkflow
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2022-05-11 19:24:16 +02:00 |
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Matthias De Smet
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1dccf12077
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Merge pull request #1645 from matthdsm/update/bowtie2-align
bowtie2: remove code duplication
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2022-05-11 19:12:23 +02:00 |
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Matthias De Smet
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dcf9c07fc9
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Merge branch 'master' into update/bowtie2-align
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2022-05-11 19:08:23 +02:00 |
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Harshil Patel
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4aaff98c49
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Merge pull request #1630 from nf-core/add-ncbi-settings
feat: add module that verifies NCBI settings
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2022-05-11 17:51:24 +01:00 |
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Moritz E. Beber
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98d8a741ec
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tests: add missing paths to config
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2022-05-11 18:17:27 +02:00 |
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Moritz E. Beber
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888620063b
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tests: delete settings for conda
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2022-05-11 17:44:49 +02:00 |
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Moritz E. Beber
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b2dbaa9930
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refactor: rename module
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2022-05-11 17:33:45 +02:00 |
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Moritz E. Beber
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23091aabda
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refactor: move files to custom section
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2022-05-11 17:33:45 +02:00 |
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Moritz E. Beber
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a83dd33a7e
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tests: use remove settings file
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2022-05-11 17:33:45 +02:00 |
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Moritz E. Beber
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e4551a9ab3
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refactor: always output settings
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2022-05-11 17:33:45 +02:00 |
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Moritz E. Beber
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64ff23f3c1
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feat: add module that verifies NCBI settings
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2022-05-11 17:33:45 +02:00 |
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Harshil Patel
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4e603393c3
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Merge branch 'master' into update/bowtie2-align
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2022-05-11 15:47:37 +01:00 |
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Matthias De Smet
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c8d3de2ad9
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restore samtools cmd to defaults
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2022-05-11 16:17:30 +02:00 |
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Mahesh Binzer-Panchal
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64dad04b9b
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Merge pull request #1646 from mahesh-panchal/fix_test_config
Fix path
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2022-05-11 15:58:55 +02:00 |
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Mahesh Binzer-Panchal
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fbe2f85e7b
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Fix path
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2022-05-11 13:53:38 +00:00 |
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Matthias De Smet
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bcd7fe55b1
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Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:59:03 +02:00 |
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Matthias De Smet
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9097abf277
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Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:58:58 +02:00 |
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Matthias De Smet
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971a889e2a
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Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:57:27 +02:00 |
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Matthias De Smet
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b456d8fa0a
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Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:57:19 +02:00 |
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Matthias De Smet
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ff4b297827
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Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:57:11 +02:00 |
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Matthias De Smet
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94e8c3a882
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Update tests/modules/bowtie2/align/test.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:56:03 +02:00 |
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Matthias De Smet
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9dd083fa94
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Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:55:55 +02:00 |
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Matthias De Smet
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0d00452eca
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Update tests/modules/bowtie2/align/test.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:55:45 +02:00 |
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Matthias De Smet
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dcffd93875
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Merge branch 'master' into update/bowtie2-align
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2022-05-11 13:34:24 +02:00 |
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CMGG ICT Team
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3ae8cbfad7
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bowtie2: remove code duplication
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2022-05-11 13:32:56 +02:00 |
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Harshil Patel
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9602b989eb
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Merge pull request #1632 from nf-core/refactor-fasterq-dump
Refactor fasterq dump
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2022-05-11 12:14:22 +01:00 |
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Moritz E. Beber
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0cdf7767a7
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refactor: require NCBI user settings always
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2022-05-11 13:02:52 +02:00 |
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Moritz E. Beber
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eae7161a32
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tests: add settings input or not and test all branches
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2022-05-11 12:47:54 +02:00 |
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Moritz E. Beber
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d4f13ebfff
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refactor: create new settings input
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2022-05-11 12:47:54 +02:00 |
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Moritz E. Beber
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5d593bdb45
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docs: correct license and input description
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2022-05-11 12:47:54 +02:00 |
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Mahesh Binzer-Panchal
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00fcdd0cba
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Merge branch 'master' into genomescope2
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2022-05-11 12:42:39 +02:00 |
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Mahesh Binzer-Panchal
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d54cf467f4
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Update outputs and test data set
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2022-05-11 10:42:17 +00:00 |
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Harshil Patel
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79bf60fa11
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Merge pull request #1631 from nf-core/refactor-prefetch
Refactor prefetch
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2022-05-11 11:29:02 +01:00 |
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Harshil Patel
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7be7f404d5
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Merge branch 'master' into refactor-prefetch
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2022-05-11 11:28:02 +01:00 |
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Mahesh Binzer-Panchal
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0774704038
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Merge branch 'master' into genomescope2
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2022-05-11 11:38:36 +02:00 |
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Praveen Raj S
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ae55653c3c
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Merge pull request #1638 from rannick/master
Update arriba
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2022-05-10 14:39:29 +02:00 |
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Praveen Raj S
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237971cd15
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Merge branch 'master' into master
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2022-05-10 14:35:41 +02:00 |
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nvnieuwk
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914e56163a
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Merge pull request #1624 from nvnieuwk/new-module-rtg/vcfeval
New module rtg/vcfeval
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2022-05-10 13:41:20 +02:00 |
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Nicolas Vannieuwkerke
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c9cd7be8df
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Merge branch 'new-module-rtg/vcfeval' of github.com:nvnieuwk/modules into new-module-rtg/vcfeval
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2022-05-10 13:33:40 +02:00 |
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Nicolas Vannieuwkerke
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fa7c947c35
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Adjusted meta
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2022-05-10 13:33:37 +02:00 |
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nvnieuwk
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d3927aae99
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Update modules/rtgtools/vcfeval/main.nf
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-10 13:26:14 +02:00 |
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nvnieuwk
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7fc4cc5a38
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Update modules/rtgtools/vcfeval/main.nf
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-10 13:23:22 +02:00 |
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Nicolas Vannieuwkerke
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b7134855e4
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Small update on the output channels
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2022-05-10 12:34:52 +02:00 |
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Moritz E. Beber
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1b228835e9
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refactor: require settings input always
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2022-05-10 12:29:42 +02:00 |
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