Mahesh Binzer-Panchal
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5df0bcf1be
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Update tests/modules/genomescope2/test.yml
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
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2022-05-13 11:27:42 +02:00 |
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Matthias De Smet
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fc987d5fcd
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Merge pull request #1650 from nvnieuwk/update-module-rtgtools/vcfeval
Added memory allocation to VCFeval
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2022-05-13 10:55:32 +02:00 |
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Nicolas Vannieuwkerke
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6fa1c8089a
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Added memory allocation to VCFeval
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2022-05-13 10:03:20 +02:00 |
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James A. Fellows Yates
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2eebab4f35
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Update tests/modules/motus/profile/test.yml
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2022-05-12 20:55:54 +01:00 |
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James A. Fellows Yates
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8dd711aba2
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Update tests/modules/motus/profile/main.nf
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2022-05-12 20:08:37 +01:00 |
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FriederikeHanssen
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868150e1af
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Merge branch 'master' into gatk_426
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2022-05-12 19:33:07 +02:00 |
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Rike
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5f7b02189a
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reverse again, why did tests pass before
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2022-05-12 18:35:51 +02:00 |
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Rike
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e3a17b699e
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update version
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2022-05-12 18:19:33 +02:00 |
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Rike
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99880654bf
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add output default bam
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2022-05-12 18:06:15 +02:00 |
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Rike
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3fda3903dc
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revert markduplciatespark container
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2022-05-12 17:40:42 +02:00 |
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Rike
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8792d102ee
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fix test input
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2022-05-12 17:37:06 +02:00 |
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Rike
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a694267b4b
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fix empty index input
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2022-05-12 17:01:03 +02:00 |
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Mahesh Binzer-Panchal
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308ab8801d
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Merge branch 'master' into kat_hist
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2022-05-12 16:52:05 +02:00 |
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Rike
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b3bd55da76
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getpileupsummaries requires intervals files
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2022-05-12 16:51:17 +02:00 |
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Rike
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f40cfefc08
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leftover fixes from refactoring
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2022-05-12 16:47:17 +02:00 |
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Rike
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15fbf21b28
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double tmpdir args removed, porb leftover after massive refactor where we decided to make it mandatory everywhere
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2022-05-12 16:16:53 +02:00 |
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Rike
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fef5434c4c
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Update md5sums
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2022-05-12 16:07:12 +02:00 |
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Rike
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fd7ee6799a
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update version also for spark containers
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2022-05-12 15:55:11 +02:00 |
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Rike
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169b2b96c1
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update gatk version
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2022-05-12 15:45:21 +02:00 |
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Jasmin F
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85b3c2bcf2
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Apply suggestions from code review
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-12 15:28:19 +02:00 |
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JIANHONG OU
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6b960f0e75
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fix the typo in motus_profile.
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2022-05-12 09:20:32 -04:00 |
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James A. Fellows Yates
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3c02e6056c
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Merge branch 'master' into antismashlite
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2022-05-12 14:53:52 +02:00 |
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Harshil Patel
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be0f022053
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Merge pull request #1648 from nf-core/refactor-sra-fastq
refactor: rename and update subworkflow
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2022-05-12 11:26:15 +01:00 |
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jasmezz
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d2ef476321
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Fix Prettier linting error
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2022-05-12 12:19:50 +02:00 |
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jasmezz
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37cc6f250b
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Fixed test.yml
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2022-05-12 12:14:19 +02:00 |
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Chris Cheshire
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90c67794bf
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Added extra tests but error with collection
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2022-05-12 10:01:33 +01:00 |
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jasmezz
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bd4b70439b
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Streamlined some output channels, formatted tests main.nf
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2022-05-12 10:56:48 +02:00 |
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Chris Cheshire
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4bb0423a1d
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Merge remote-tracking branch 'nf-core/master'
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2022-05-12 08:57:56 +01:00 |
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JIANHONG OU
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a2dbef3de3
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remove the wrong quotes for motus_profile.
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2022-05-11 17:49:12 -04:00 |
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JIANHONG OU
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aca4b48842
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Merge branch 'motus_profile' of github.com:jianhong/modules into motus_profile
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2022-05-11 14:23:25 -04:00 |
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JIANHONG OU
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ae81311a78
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fix the typo when using getExtension for motus_profile.
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2022-05-11 14:23:09 -04:00 |
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Moritz E. Beber
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74b11ccc44
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refactor: rename and update subworkflow
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2022-05-11 19:24:16 +02:00 |
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Matthias De Smet
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1dccf12077
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Merge pull request #1645 from matthdsm/update/bowtie2-align
bowtie2: remove code duplication
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2022-05-11 19:12:23 +02:00 |
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Matthias De Smet
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dcf9c07fc9
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Merge branch 'master' into update/bowtie2-align
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2022-05-11 19:08:23 +02:00 |
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Harshil Patel
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4aaff98c49
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Merge pull request #1630 from nf-core/add-ncbi-settings
feat: add module that verifies NCBI settings
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2022-05-11 17:51:24 +01:00 |
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Moritz E. Beber
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98d8a741ec
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tests: add missing paths to config
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2022-05-11 18:17:27 +02:00 |
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Moritz E. Beber
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888620063b
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tests: delete settings for conda
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2022-05-11 17:44:49 +02:00 |
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Moritz E. Beber
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b2dbaa9930
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refactor: rename module
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2022-05-11 17:33:45 +02:00 |
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Moritz E. Beber
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23091aabda
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refactor: move files to custom section
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2022-05-11 17:33:45 +02:00 |
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Moritz E. Beber
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a83dd33a7e
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tests: use remove settings file
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2022-05-11 17:33:45 +02:00 |
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Moritz E. Beber
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e4551a9ab3
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refactor: always output settings
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2022-05-11 17:33:45 +02:00 |
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Moritz E. Beber
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64ff23f3c1
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feat: add module that verifies NCBI settings
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2022-05-11 17:33:45 +02:00 |
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Mahesh Binzer-Panchal
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0199d0efd2
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Merge branch 'master' into kat_hist
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2022-05-11 16:56:29 +02:00 |
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Harshil Patel
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4e603393c3
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Merge branch 'master' into update/bowtie2-align
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2022-05-11 15:47:37 +01:00 |
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Matthias De Smet
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c8d3de2ad9
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restore samtools cmd to defaults
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2022-05-11 16:17:30 +02:00 |
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Mahesh Binzer-Panchal
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64dad04b9b
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Merge pull request #1646 from mahesh-panchal/fix_test_config
Fix path
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2022-05-11 15:58:55 +02:00 |
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Jasmin F
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853e3ec087
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Remove commented code
Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
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2022-05-11 15:56:10 +02:00 |
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Mahesh Binzer-Panchal
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fbe2f85e7b
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Fix path
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2022-05-11 13:53:38 +00:00 |
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Matthias De Smet
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bcd7fe55b1
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Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:59:03 +02:00 |
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Matthias De Smet
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9097abf277
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Update modules/bowtie2/align/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-05-11 13:58:58 +02:00 |
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