FelixKrueger
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684005f2cb
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Fixing markdown lint 2
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2020-07-15 16:00:21 +01:00 |
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FelixKrueger
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4f8b7a90aa
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Trying to fix markdown linting
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2020-07-15 15:59:17 +01:00 |
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FelixKrueger
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02156d6b0d
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Removing old subsampled SRR files
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2020-07-15 15:48:09 +01:00 |
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FelixKrueger
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e90164dd0b
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Adding back tool specific input output and index files
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2020-07-15 15:46:45 +01:00 |
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FelixKrueger
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1c84a234ec
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Adding back in all input files we had before
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2020-07-15 15:12:04 +01:00 |
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Felix Krueger
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45cc9ede3e
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Merge pull request #44 from drpatelh/master
Change test directory name to input for FastQC
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2020-07-15 15:17:52 +02:00 |
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drpatelh
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532859d437
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Update path
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2020-07-15 14:07:19 +01:00 |
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Harshil Patel
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6028bb080b
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Merge pull request #40 from grst/update-fastqc
Update fastqc to adhere to new module guidelines
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2020-07-15 12:59:28 +01:00 |
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Harshil Patel
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741b0786f9
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Merge pull request #43 from grst/update-module-requirements
Extend and formalize module requirements
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2020-07-15 12:58:12 +01:00 |
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Gregor Sturm
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5fe7b9eb66
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Update README.md
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2020-07-15 13:29:21 +02:00 |
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Gregor Sturm
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a2bcb5c36a
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Update module according to discussion on Slack
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2020-07-15 13:04:49 +02:00 |
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Gregor Sturm
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01a926866e
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Update software/fastqc/test/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2020-07-15 12:48:21 +02:00 |
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Gregor Sturm
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9d7cece077
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Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2020-07-15 12:48:11 +02:00 |
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Gregor Sturm
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5a8803ee2f
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Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2020-07-15 12:48:03 +02:00 |
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Gregor Sturm
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a3db769a93
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Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2020-07-15 12:47:52 +02:00 |
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Gregor Sturm
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180310bf0a
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Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2020-07-15 12:47:42 +02:00 |
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Gregor Sturm
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6ad2b570c2
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Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2020-07-15 12:47:30 +02:00 |
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Gregor Sturm
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53897f4d97
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Update software/fastqc/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2020-07-15 12:47:19 +02:00 |
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Gregor Sturm
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450e2839d5
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Extend and formalize module requirements
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2020-07-15 12:44:52 +02:00 |
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Gregor Sturm
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b00bb83532
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Document params
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2020-07-15 11:01:15 +02:00 |
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Gregor Sturm
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86d6daf9de
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Implement publish_results parameter
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2020-07-15 10:55:52 +02:00 |
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Gregor Sturm
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1dc47e7cd3
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Make publishDir more flexible
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2020-07-15 10:16:48 +02:00 |
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Gregor Sturm
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dd34fa5853
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Use moduleDir for conda env
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2020-07-15 09:48:17 +02:00 |
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Gregor Sturm
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f7c42ac4fd
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Add tests for fastqc module
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2020-07-15 09:48:14 +02:00 |
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Gregor Sturm
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167067a92e
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Clean up module file
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2020-07-15 09:47:41 +02:00 |
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Harshil Patel
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a5306b33da
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Merge pull request #39 from grst/document-module-standards
Document preliminary module structure
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2020-07-14 18:53:24 +01:00 |
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Gregor Sturm
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7121879714
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Add: All outputs should be named
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2020-07-14 16:13:05 +02:00 |
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Gregor Sturm
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8f3718795b
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Fix markdownlint
Move markdownlint.yml to root directory. Like that it is automatically discovered and applied by most IDEs
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2020-07-14 12:21:33 +02:00 |
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Gregor Sturm
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fe882f1579
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Add software dependencies and version string to requirements list
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2020-07-14 12:07:41 +02:00 |
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Gregor Sturm
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4ee6ddc7ab
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Update README
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2020-07-14 10:55:38 +02:00 |
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Phil Ewels
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8155270653
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Merge pull request #38 from ewels/master
Fix up cutadapt tests
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2020-07-11 17:16:26 +02:00 |
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Phil Ewels
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31c0f617b9
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Fix up cutadapt tests
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2020-07-11 17:14:14 +02:00 |
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Phil Ewels
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abfd112964
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Merge pull request #37 from ewels/master
Cutadapt - merge tests into one
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2020-07-11 17:09:50 +02:00 |
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Phil Ewels
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f36902b9af
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Cutadapt - merge tests into one
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2020-07-11 17:09:06 +02:00 |
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Phil Ewels
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7ae79df07c
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Merge pull request #36 from ewels/change-filestructure
Restructure file hierarchy
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2020-07-11 14:53:33 +02:00 |
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Phil Ewels
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905e842f36
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Update more paths
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2020-07-11 14:36:12 +02:00 |
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Phil Ewels
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d3f3432451
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Update test file imports
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2020-07-11 14:33:12 +02:00 |
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Phil Ewels
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a6b2485dab
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Move social preview image
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2020-07-11 14:28:58 +02:00 |
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Phil Ewels
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cffb8b63ab
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Move to new tests/ folder
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2020-07-11 14:28:26 +02:00 |
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Phil Ewels
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014fef2e92
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Rename tools to software
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2020-07-11 14:27:21 +02:00 |
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Phil Ewels
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edd508487b
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Merge pull request #35 from ewels/editor-config
Editor config
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2020-07-11 14:20:37 +02:00 |
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Phil Ewels
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229bd5d085
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Update test-datasets
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2020-07-11 13:57:17 +02:00 |
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Phil Ewels
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47d55001fa
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Fix YAML validation errors
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2020-07-11 13:54:12 +02:00 |
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Phil Ewels
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263f48d520
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Fix markdownlint
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2020-07-11 13:48:11 +02:00 |
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Phil Ewels
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45fb2ff4f4
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Remove verbose job names
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2020-07-11 13:45:08 +02:00 |
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Phil Ewels
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fc53a6f0b5
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Added markdown lint config file
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2020-07-11 13:44:28 +02:00 |
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Phil Ewels
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ae38a9bf41
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Fix editor config styles
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2020-07-11 13:42:13 +02:00 |
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Phil Ewels
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a547f27f21
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New GitHub Action to lint code style
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2020-07-11 13:41:31 +02:00 |
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Phil Ewels
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0241467b1e
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Merge pull request #33 from nf-core/grst-patch-1
Create .editorconfig
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2020-07-11 13:32:05 +02:00 |
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Phil Ewels
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cb89722ea8
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Merge pull request #34 from luslab/feat-mod-umitools
Added Umi-tools module covering the dedup function
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2020-07-11 13:31:40 +02:00 |
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