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Author	SHA1	Message	Date
Nicolas Vannieuwkerke	8a17b6dd0e	added gatk4/splitintervals	2022-05-13 13:46:34 +02:00
Matthias De Smet	fc987d5fcd	Merge pull request #1650 from nvnieuwk/update-module-rtgtools/vcfeval ... Added memory allocation to VCFeval	2022-05-13 10:55:32 +02:00
Nicolas Vannieuwkerke	6fa1c8089a	Added memory allocation to VCFeval	2022-05-13 10:03:20 +02:00
Harshil Patel	be0f022053	Merge pull request #1648 from nf-core/refactor-sra-fastq ... refactor: rename and update subworkflow	2022-05-12 11:26:15 +01:00
Moritz E. Beber	74b11ccc44	refactor: rename and update subworkflow	2022-05-11 19:24:16 +02:00
Matthias De Smet	1dccf12077	Merge pull request #1645 from matthdsm/update/bowtie2-align ... bowtie2: remove code duplication	2022-05-11 19:12:23 +02:00
Matthias De Smet	dcf9c07fc9	Merge branch 'master' into update/bowtie2-align	2022-05-11 19:08:23 +02:00
Harshil Patel	4aaff98c49	Merge pull request #1630 from nf-core/add-ncbi-settings ... feat: add module that verifies NCBI settings	2022-05-11 17:51:24 +01:00
Moritz E. Beber	98d8a741ec	tests: add missing paths to config	2022-05-11 18:17:27 +02:00
Moritz E. Beber	888620063b	tests: delete settings for conda	2022-05-11 17:44:49 +02:00
Moritz E. Beber	b2dbaa9930	refactor: rename module	2022-05-11 17:33:45 +02:00
Moritz E. Beber	23091aabda	refactor: move files to custom section	2022-05-11 17:33:45 +02:00
Moritz E. Beber	a83dd33a7e	tests: use remove settings file	2022-05-11 17:33:45 +02:00
Moritz E. Beber	e4551a9ab3	refactor: always output settings	2022-05-11 17:33:45 +02:00
Moritz E. Beber	64ff23f3c1	feat: add module that verifies NCBI settings	2022-05-11 17:33:45 +02:00
Harshil Patel	4e603393c3	Merge branch 'master' into update/bowtie2-align	2022-05-11 15:47:37 +01:00
Matthias De Smet	c8d3de2ad9	restore samtools cmd to defaults	2022-05-11 16:17:30 +02:00
Mahesh Binzer-Panchal	64dad04b9b	Merge pull request #1646 from mahesh-panchal/fix_test_config ... Fix path	2022-05-11 15:58:55 +02:00
Mahesh Binzer-Panchal	fbe2f85e7b	Fix path	2022-05-11 13:53:38 +00:00
Matthias De Smet	bcd7fe55b1	Update modules/bowtie2/align/main.nf ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2022-05-11 13:59:03 +02:00
Matthias De Smet	9097abf277	Update modules/bowtie2/align/main.nf ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2022-05-11 13:58:58 +02:00
Matthias De Smet	971a889e2a	Update modules/bowtie2/align/main.nf ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2022-05-11 13:57:27 +02:00
Matthias De Smet	b456d8fa0a	Update modules/bowtie2/align/main.nf ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2022-05-11 13:57:19 +02:00
Matthias De Smet	ff4b297827	Update modules/bowtie2/align/main.nf ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2022-05-11 13:57:11 +02:00
Matthias De Smet	94e8c3a882	Update tests/modules/bowtie2/align/test.yml ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2022-05-11 13:56:03 +02:00
Matthias De Smet	9dd083fa94	Update modules/bowtie2/align/main.nf ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2022-05-11 13:55:55 +02:00
Matthias De Smet	0d00452eca	Update tests/modules/bowtie2/align/test.yml ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2022-05-11 13:55:45 +02:00
Matthias De Smet	dcffd93875	Merge branch 'master' into update/bowtie2-align	2022-05-11 13:34:24 +02:00
CMGG ICT Team	3ae8cbfad7	bowtie2: remove code duplication	2022-05-11 13:32:56 +02:00
Harshil Patel	9602b989eb	Merge pull request #1632 from nf-core/refactor-fasterq-dump ... Refactor fasterq dump	2022-05-11 12:14:22 +01:00
Moritz E. Beber	0cdf7767a7	refactor: require NCBI user settings always	2022-05-11 13:02:52 +02:00
Moritz E. Beber	eae7161a32	tests: add settings input or not and test all branches	2022-05-11 12:47:54 +02:00
Moritz E. Beber	d4f13ebfff	refactor: create new settings input	2022-05-11 12:47:54 +02:00
Moritz E. Beber	5d593bdb45	docs: correct license and input description	2022-05-11 12:47:54 +02:00
Harshil Patel	79bf60fa11	Merge pull request #1631 from nf-core/refactor-prefetch ... Refactor prefetch	2022-05-11 11:29:02 +01:00
Harshil Patel	7be7f404d5	Merge branch 'master' into refactor-prefetch	2022-05-11 11:28:02 +01:00
Praveen Raj S	ae55653c3c	Merge pull request #1638 from rannick/master ... Update arriba	2022-05-10 14:39:29 +02:00
Praveen Raj S	237971cd15	Merge branch 'master' into master	2022-05-10 14:35:41 +02:00
nvnieuwk	914e56163a	Merge pull request #1624 from nvnieuwk/new-module-rtg/vcfeval ... New module rtg/vcfeval	2022-05-10 13:41:20 +02:00
Nicolas Vannieuwkerke	c9cd7be8df	Merge branch 'new-module-rtg/vcfeval' of github.com:nvnieuwk/modules into new-module-rtg/vcfeval	2022-05-10 13:33:40 +02:00
Nicolas Vannieuwkerke	fa7c947c35	Adjusted meta	2022-05-10 13:33:37 +02:00
nvnieuwk	d3927aae99	Update modules/rtgtools/vcfeval/main.nf ... Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>	2022-05-10 13:26:14 +02:00
nvnieuwk	7fc4cc5a38	Update modules/rtgtools/vcfeval/main.nf ... Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>	2022-05-10 13:23:22 +02:00
Nicolas Vannieuwkerke	b7134855e4	Small update on the output channels	2022-05-10 12:34:52 +02:00
Moritz E. Beber	1b228835e9	refactor: require settings input always	2022-05-10 12:29:42 +02:00
Nicolas Vannieuwkerke	c18391aa49	Updated meta.yml	2022-05-10 12:26:13 +02:00
nvnieuwk	2eb77bd64e	Update modules/rtgtools/vcfeval/main.nf ... Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>	2022-05-10 12:22:56 +02:00
nvnieuwk	29f2d3c284	Update modules/rtgtools/vcfeval/main.nf ... Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>	2022-05-10 12:22:49 +02:00
Nicolas Vannieuwkerke	ef4857ec54	Updated meta.yml	2022-05-10 12:20:01 +02:00
Moritz E. Beber	a303904eb0	chore: add settings file to test data config	2022-05-10 12:19:25 +02:00