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Author SHA1 Message Date
Subazini TK
78dc1af1e6 Update main.nf 2022-05-16 15:20:15 +00:00
Subazini TK
060d33f2c3 Update test.yml 2022-05-16 15:20:15 +00:00
Subazini TK
df8f1eae69 Update test.yml 2022-05-16 15:20:15 +00:00
sysbiocoder
26f026683b hmtnote 2022-05-16 15:20:15 +00:00
sysbiocoder
31fc8b560f hmtnote 2022-05-16 15:20:15 +00:00
sysbiocoder
fe009b738a modified: tests/config/pytest_modules.yml 2022-05-16 15:20:15 +00:00
Veit Schwämmle
85345e5f61
Merge branch 'master' into maxquant 2022-05-16 16:06:32 +02:00
Praveen Raj S
673e3b3a3f
Merge pull request #1656 from praveenraj2018/process_lable_markdup 
Changed process label to Medium for GATK4/MarkDuplicates
 2022-05-16 16:02:50 +02:00
Praveen Raj S
df2620cfc7
Merge branch 'master' into process_lable_markdup 2022-05-16 15:53:26 +02:00
Matthias De Smet
98f204fd1f
Update modules/biobambam/bammerge/main.nf 
Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>
 2022-05-16 15:13:54 +02:00
Matthias De Smet
cdbe648400 align 2022-05-16 14:44:32 +02:00
Matthias De Smet
2cca156fed linting 2022-05-16 14:42:34 +02:00
Matthias De Smet
af69ea749d add module: biobambam/bammerge 2022-05-16 14:39:58 +02:00
veitveit
12815af53e ran prettier 2022-05-16 14:30:40 +02:00
Veit Schwämmle
74a1c1400e
Merge branch 'master' into maxquant 2022-05-16 13:26:35 +02:00
Jasmin F
c6fae2ae6d
Merge pull request #1602 from jasmezz/antismashlite 
Add AntiSMASH-lite
 2022-05-16 12:02:08 +02:00
Jasmin F
982c9183fa
Merge branch 'master' into antismashlite 2022-05-16 11:42:44 +02:00
FriederikeHanssen
0b0556b57f
Merge pull request #1649 from FriederikeHanssen/gatk_426 
update gatk version to 4.2.6.1
 2022-05-16 11:24:14 +02:00
Jasmin F
adcfae6cd4
Merge branch 'master' into antismashlite 2022-05-16 10:38:01 +02:00
Rike
eb841d4ea0 revert markduplciatespark changes 2022-05-16 10:33:01 +02:00
Rike
ba14355891 revert markduplciatespark changes 2022-05-16 09:54:40 +02:00
FriederikeHanssen
8b4d021189
Merge branch 'master' into gatk_426 2022-05-16 09:50:13 +02:00
Jose Espinosa-Carrasco
759223d22d
Merge pull request #1660 from matthdsm/update/bowtie2 
Bowtie2: add sort option
 2022-05-13 20:23:04 +02:00
Matthias De Smet
5a2e303522 add PE sorted test 2022-05-13 19:16:50 +02:00
Matthias De Smet
04f82d4d34 fix test name 2022-05-13 15:32:14 +02:00
JIANHONG OU
fadb83cf44
Merge branch 'master' into motus_profile 2022-05-13 09:30:20 -04:00
Matthias De Smet
cbc47767f7 add sort option to bowtie2 2022-05-13 15:26:41 +02:00
nvnieuwk
919275103a
Merge pull request #1655 from nvnieuwk/new-module-gatk4/splitintervals 
new module: gatk4/splitintervals
 2022-05-13 14:43:15 +02:00
Nicolas Vannieuwkerke
6427eeeca0 added tmp-dir + alignment correction 2022-05-13 14:35:22 +02:00
Nicolas Vannieuwkerke
a72f06dfe8 removed versions checksum 2022-05-13 14:27:59 +02:00
Nicolas Vannieuwkerke
1c2a991429 fixed memory warning 2022-05-13 14:25:53 +02:00
Nicolas Vannieuwkerke
d1f824ae66 updated meta.yml 2022-05-13 14:21:48 +02:00
Praveen
e0dccbb5dd Changed process label to Medium for GATK4/MarkDuplicates 2022-05-13 13:55:14 +02:00
Nicolas Vannieuwkerke
4f6264f7c3 Merge branch 'new-module-gatk4/splitintervals' of github.com:nvnieuwk/modules into new-module-gatk4/splitintervals 2022-05-13 13:48:35 +02:00
Nicolas Vannieuwkerke
9d53577282 linting 2022-05-13 13:48:33 +02:00
nvnieuwk
1d4862ba60
Merge branch 'master' into new-module-gatk4/splitintervals 2022-05-13 13:47:20 +02:00
Nicolas Vannieuwkerke
8a17b6dd0e added gatk4/splitintervals 2022-05-13 13:46:34 +02:00
Chris Cheshire
af017b32a5
Merge pull request #1653 from luslab/bowtie2-test-fix 
Bowtie2 test fixes
 2022-05-13 12:32:28 +01:00
Chris Cheshire
ea55129ba3 Removed version file checksums 2022-05-13 12:20:41 +01:00
Chris Cheshire
9f6a1ae4a4
Merge branch 'master' into bowtie2-test-fix 2022-05-13 12:05:48 +01:00
Chris Cheshire
d816f2bc5d Reactivated all tests 2022-05-13 12:01:16 +01:00
Mahesh Binzer-Panchal
4acbf9d356
Merge pull request #1641 from mahesh-panchal/genomescope2 
Genomescope2 module
 2022-05-13 11:37:49 +02:00
Mahesh Binzer-Panchal
00826dc2e9
Merge branch 'master' into genomescope2 2022-05-13 11:28:47 +02:00
Mahesh Binzer-Panchal
5df0bcf1be
Update tests/modules/genomescope2/test.yml 
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
 2022-05-13 11:27:42 +02:00
Matthias De Smet
fc987d5fcd
Merge pull request #1650 from nvnieuwk/update-module-rtgtools/vcfeval 
Added memory allocation to VCFeval
 2022-05-13 10:55:32 +02:00
Nicolas Vannieuwkerke
6fa1c8089a Added memory allocation to VCFeval 2022-05-13 10:03:20 +02:00
James A. Fellows Yates
2eebab4f35
Update tests/modules/motus/profile/test.yml 2022-05-12 20:55:54 +01:00
James A. Fellows Yates
8dd711aba2
Update tests/modules/motus/profile/main.nf 2022-05-12 20:08:37 +01:00
FriederikeHanssen
868150e1af
Merge branch 'master' into gatk_426 2022-05-12 19:33:07 +02:00
Rike
5f7b02189a reverse again, why did tests pass before 2022-05-12 18:35:51 +02:00