Harshil Patel
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c74d8a1711
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Merge pull request #128 from JoseEspinosa/bowtie2_viralrecon
Bowtie2 viralrecon 2
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2021-02-01 09:56:11 +00:00 |
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Harshil Patel
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2c962f34df
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Merge pull request #110 from luslab/master
Add SEACR module containing a single CALLPEAK process
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2021-02-01 09:48:15 +00:00 |
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Chris Cheshire
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41233763ae
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Removed test-datasets submodule
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2021-02-01 09:46:24 +00:00 |
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JoseEspinosa
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8fb6b80abd
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Fixing some md5 hashes
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2021-01-30 23:08:17 +01:00 |
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JoseEspinosa
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3c95af9e50
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Merge branch 'bowtie2_viralrecon' of https://github.com/JoseEspinosa/modules into bowtie2_viralrecon
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2021-01-30 22:53:53 +01:00 |
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JoseEspinosa
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177693de49
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Adding worflow yml for bowtie2_align and bowtie2_build
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2021-01-30 22:53:27 +01:00 |
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Harshil Patel
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eadbea4b83
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Merge pull request #127 from JoseEspinosa/bowtie2_viralrecon
Bowtie2 viralrecon
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2021-01-30 13:22:30 +00:00 |
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Harshil Patel
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eab633776e
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Update software/bowtie2/build/meta.yml
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2021-01-30 13:21:56 +00:00 |
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JoseEspinosa
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986b72cee9
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Fix error on previous commit
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2021-01-30 09:35:25 +01:00 |
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JoseEspinosa
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29989035a5
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Remove author entry from yml (copy-pasted :P)
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2021-01-30 09:29:53 +01:00 |
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JoseEspinosa
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ddbe8055c2
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Adding tests
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2021-01-29 19:31:33 +01:00 |
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JoseEspinosa
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43f9815621
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Adding module bowtie2 align
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2021-01-29 19:29:32 +01:00 |
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Harshil Patel
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bd59706d51
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Merge pull request #118 from heuermh/dsh-bio
Added dsh-bio filter-bed as dsh_filterbed
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2021-01-29 18:15:24 +00:00 |
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Harshil Patel
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7ab3217f16
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Update software/dsh/filterbed/main.nf
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2021-01-29 18:14:13 +00:00 |
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Harshil Patel
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cf5e38f48b
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Update software/dsh/filterbed/main.nf
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2021-01-29 18:14:08 +00:00 |
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Harshil Patel
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0fcbc4233c
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Merge pull request #126 from JoseEspinosa/samtools_viralrecon
Samtools viralrecon
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2021-01-29 18:12:48 +00:00 |
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Harshil Patel
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eb7a3861db
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Update software/samtools/mpileup/meta.yml
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2021-01-29 18:12:17 +00:00 |
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JoseEspinosa
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2f9934c563
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Adding bowtie2_build module
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2021-01-29 18:57:27 +01:00 |
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JoseEspinosa
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720db2bed5
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Fixing samtools_mpileup test
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2021-01-29 18:21:03 +01:00 |
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JoseEspinosa
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13e9f81160
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Fixing lint tests
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2021-01-29 18:01:58 +01:00 |
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JoseEspinosa
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22dcdc692d
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Adding samtools_mpileup module
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2021-01-29 17:58:42 +01:00 |
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JoseEspinosa
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3eedca9bb4
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Add samtools_view
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2021-01-29 17:18:45 +01:00 |
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Michael L Heuer
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d2723408ad
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Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-29 09:01:21 -06:00 |
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Harshil Patel
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29ce4e670f
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Merge pull request #124 from KevinMenden/pangolin-module
Added pangolin module
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2021-01-29 11:58:54 +00:00 |
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kevinmenden
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d30994c6ef
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Merge branch 'pangolin-module' of https://github.com/KevinMenden/modules into pangolin-module
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2021-01-29 12:54:38 +01:00 |
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kevinmenden
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bacebdfb47
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added pangolin workf
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2021-01-29 12:53:51 +01:00 |
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kevinmenden
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44df90a795
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Merge branch 'master' of https://github.com/nf-core/modules into pangolin-module
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2021-01-29 12:50:24 +01:00 |
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Harshil Patel
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5da41ecb26
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Merge pull request #122 from KevinMenden/master
Added tests and meta.yml files for Salmon
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2021-01-29 11:49:03 +00:00 |
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Harshil Patel
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adfb38aa62
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Merge pull request #123 from KevinMenden/cutadapt-module
Added cutadapt module
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2021-01-29 11:47:21 +00:00 |
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kevinmenden
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4e48b416b9
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Merge branch 'master' of https://github.com/KevinMenden/modules
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2021-01-29 12:45:38 +01:00 |
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kevinmenden
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9156becd19
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changed 'covid' to 'sarscov2'
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2021-01-29 12:45:21 +01:00 |
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Harshil Patel
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59e3e8202b
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Update software/pangolin/main.nf
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2021-01-29 11:43:42 +00:00 |
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Kevin Menden
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afaef3c30d
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Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-29 12:40:15 +01:00 |
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kevinmenden
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a22f430674
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updated input description
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2021-01-29 12:34:23 +01:00 |
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Kevin Menden
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8f2f936cd4
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Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-29 12:33:37 +01:00 |
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kevinmenden
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14ade8060f
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added preliminary pangolin test
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2021-01-29 11:12:22 +01:00 |
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kevinmenden
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69a41cadbc
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added pangolin module
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2021-01-29 11:03:54 +01:00 |
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kevinmenden
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d91cd73e52
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added test workflow
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2021-01-29 09:41:24 +01:00 |
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kevinmenden
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0780155dc4
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added cutadapt module and tests
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2021-01-29 09:33:45 +01:00 |
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kevinmenden
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3390f7621d
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removed should_exist tag
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2021-01-27 16:32:04 +01:00 |
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kevinmenden
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48c570d6ac
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added file exist to test.yml
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2021-01-27 08:56:25 +01:00 |
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kevinmenden
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3750bea2dd
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fixed typo
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2021-01-26 16:18:46 +01:00 |
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kevinmenden
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a3185732ff
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added meta.yml files
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2021-01-26 16:12:41 +01:00 |
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kevinmenden
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431a2eb73b
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added quant test workflow
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2021-01-26 15:58:22 +01:00 |
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kevinmenden
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915e0574a2
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added salmon index test workflow
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2021-01-26 15:44:22 +01:00 |
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kevinmenden
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81bcf0da82
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added test.yml and md5sums
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2021-01-26 15:38:56 +01:00 |
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kevinmenden
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8d4b71355e
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added test data and salmon tests
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2021-01-26 15:24:06 +01:00 |
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Harshil Patel
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3ef16b7cfd
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Merge pull request #121 from KevinMenden/master
Adding test for STAR
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2021-01-26 13:01:27 +00:00 |
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kevinmenden
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84355f674d
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added optional output files
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2021-01-26 13:31:30 +01:00 |
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Kevin Menden
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8e2749beb7
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Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-01-26 12:46:30 +01:00 |
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