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Author	SHA1	Message	Date
Edmund Miller	fe39c7822f	style: Fix indentation	2021-01-15 10:01:02 -06:00
Edmund Miller	b9e8f959b3	style: Standardize process names ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-01-15 10:00:40 -06:00
Edmund Miller	a3ca757f4e	Update .github/workflows/phantompeakqualtools.yml ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-01-15 09:38:13 -06:00
sruthipsuresh	ec91171152	Corrected naming to ensure test checks work	2021-01-15 09:38:13 -06:00
sruthipsuresh	5a1c1f90e5	removed md5sums for pdf, rdata	2021-01-15 09:38:13 -06:00
sruthipsuresh	3f814d1e2f	Workflow and md5sums added	2021-01-15 09:38:13 -06:00
sruthipsuresh	269d9888fe	Corrected bash error, tested process	2021-01-15 09:38:13 -06:00
Sruthi Suresh	b7435b0159	added test file for phantompeakqualtools for testing	2021-01-15 09:38:13 -06:00
sruthipsuresh	09d56efe12	Fixed with mr file for size issues	2021-01-14 02:12:57 -06:00
sruthipsuresh	00ef1d3863	Changed input to bed files	2021-01-15 16:52:17 -06:00
Edmund Miller	4181a7356c	Remove -bam flag ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-01-15 09:39:32 -06:00
sruthipsuresh	2d2f15af0f	Delete phantompeakqualtools.yml	2021-01-13 21:23:24 -06:00
sruthipsuresh	a66618be98	Delete tests/software/phantompeakqualtools directory	2021-01-13 21:23:02 -06:00
sruthipsuresh	6f3cbfcd9a	Fixed test.yml	2021-01-12 18:14:28 -06:00
sruthipsuresh	b297f7aea1	Fixed test and removed phantompeak tests	2021-01-12 18:04:12 -06:00
sruthipsuresh	7c88cf4f67	Finished module with md5sums	2021-01-12 09:29:31 -06:00
sruthipsuresh	0a04c96357	Added module, TODO data	2021-01-12 09:13:37 -06:00
sruthipsuresh	3b581d1912	Updated test.yml	2021-01-12 08:56:11 -06:00
sruthipsuresh	a2faeb703f	Fixed md5sums	2021-01-12 08:50:20 -06:00
sruthipsuresh	cb39fcb915	Added preseq module and workflow	2021-01-12 08:41:09 -06:00
sruthipsuresh	a812dceb23	Updated bam input in module	2021-01-12 08:32:29 -06:00
sruthipsuresh	e1a3d1b18a	Corrected naming to ensure test checks work	2020-12-21 19:53:03 -06:00
sruthipsuresh	5319eabbc5	removed md5sums for pdf, rdata	2020-12-19 06:09:04 -06:00
sruthipsuresh	522b896534	Workflow and md5sums added	2020-12-19 06:09:04 -06:00
sruthipsuresh	8c088d473b	Corrected bash error, tested process	2020-12-19 06:09:04 -06:00
Sruthi Suresh	10d0058a1a	added test file for phantompeakqualtools for testing	2020-12-19 06:09:04 -06:00
Harshil Patel	c98f9284a2	Merge pull request #89 from KevinMenden/master ... Add bowtie module	2020-12-18 14:56:29 +00:00
kevinmenden	8f75bac67e	update test.bam md5sums	2020-12-18 11:16:58 +01:00
kevinmenden	32f6191ff3	editorconfig	2020-12-18 11:11:19 +01:00
kevinmenden	db0b631906	removed index from test output	2020-12-18 11:06:02 +01:00
kevinmenden	299a3fa07e	adding .index back	2020-12-18 10:58:37 +01:00
kevinmenden	0be13edc52	next try at editorconfig	2020-12-18 09:52:38 +01:00
kevinmenden	07f0a2476a	fixed linting errors	2020-12-18 09:50:05 +01:00
kevinmenden	0eb20c14bf	fixed unaligned output	2020-12-18 09:20:35 +01:00
kevinmenden	1c89c9717b	Merge branch 'master' of https://github.com/KevinMenden/modules	2020-12-18 09:16:17 +01:00
kevinmenden	f840325ead	added unaligned output	2020-12-18 09:14:40 +01:00
Kevin Menden	7805d25cc5	Update software/bowtie/align/meta.yml ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2020-12-18 09:13:48 +01:00
Kevin Menden	a7f1ff29d7	Update software/bowtie/align/meta.yml ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2020-12-18 09:13:42 +01:00
Kevin Menden	dc4108fd9b	Update software/bowtie/align/meta.yml ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2020-12-18 09:13:35 +01:00
Kevin Menden	41329b8982	Apply suggestions from code review ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2020-12-18 08:16:18 +01:00
Harshil Patel	0305d873f4	Merge pull request #81 from nf-core/ec-ci ... Apply editorconfig and enable CI again	2020-12-18 00:46:44 +00:00
Edmund Miller	d76638d6f8	style(#77): Fix editorconfig errors	2020-12-17 17:50:24 -06:00
Edmund Miller	eb61638501	ci: Use verbose name for editorconfig-check ... I was getting confused myself with eclint	2020-12-17 17:48:19 -06:00
Edmund Miller	c6cf653f25	ci(#77): Ignore README for editorconfig ... Because of the nf-core examples it throws errors.	2020-12-17 17:48:02 -06:00
Edmund Miller	0b6f117d2a	ci(#77): eclint => editorconfig-checker	2020-12-17 17:48:02 -06:00
Harshil Patel	b236d0c834	Update main.nf	2020-12-17 10:24:01 +00:00
kevinmenden	57ab6dbcbf	groovy formatting	2020-12-17 10:24:48 +01:00
kevinmenden	8d3fc30eb3	fixed yml formatting	2020-12-17 07:39:34 +01:00
kevinmenden	d75cb75111	added singularity; edge NXF version	2020-12-17 07:33:44 +01:00
kevinmenden	f35850bf14	bowtie bam output	2020-12-16 11:02:58 +01:00