| .. |
|
abacas
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
abricate
|
add module for abricate (#1280)
|
2022-02-18 18:00:21 -07:00 |
|
adapterremoval
|
Refactor adapterremoval (#1491)
|
2022-04-04 21:40:35 +02:00 |
|
adapterremovalfixprefix
|
Add AdapterRemovalFixPrefix (#1424)
|
2022-03-21 11:26:12 +01:00 |
|
agrvate
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
allelecounter
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
ampir
|
Add file name collision check + TSV output
|
2022-06-10 12:54:39 +02:00 |
|
amplify/predict
|
add module AMPlify (#1498)
|
2022-04-20 11:53:26 +02:00 |
|
amps
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
|
amrfinderplus
|
add amrfinderplus module (#1284)
|
2022-02-19 23:02:23 +00:00 |
|
antismash
|
Apply suggestions from code review
|
2022-05-12 15:28:19 +02:00 |
|
arriba
|
update md5sum
|
2022-05-09 15:19:16 +02:00 |
|
artic
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
|
ascat
|
round the < to ( to make markdown work for meta.yml (#1395)
|
2022-03-16 13:29:11 +01:00 |
|
assemblyscan
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
ataqv/ataqv
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
atlas/splitmerge
|
Create atlas/splitmerge Module (#1756)
|
2022-06-13 15:09:32 +02:00 |
|
bakta
|
update bakta to latest version (v1.4.0) (#1428)
|
2022-03-24 10:49:17 -06:00 |
|
bamaligncleaner
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
bamcmp
|
bamcmp (#1244)
|
2022-02-02 16:38:41 +00:00 |
|
bamtools
|
Merge remote-tracking branch 'origin' into motus_profile
|
2022-05-05 09:41:13 -04:00 |
|
bamutil/trimbam
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
bandage/image
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
bbmap
|
Samtools version update (#1507)
|
2022-04-11 14:26:28 +02:00 |
|
bcftools
|
fix test
|
2022-06-08 14:48:16 +02:00 |
|
bclconvert
|
Module/bclconvert (#1485)
|
2022-04-21 15:39:22 +02:00 |
|
bedtools
|
added bedtools split
|
2022-05-17 14:24:32 +02:00 |
|
biobambam
|
fix config
|
2022-05-17 09:09:19 +02:00 |
|
biscuit
|
Add core Biscuit tools (#1354)
|
2022-03-14 09:34:22 -04:00 |
|
bismark
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
blast
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
bowtie
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
bowtie2
|
add PE sorted test
|
2022-05-13 19:16:50 +02:00 |
|
bracken/bracken
|
Add bracken (#1423)
|
2022-03-22 16:40:21 +01:00 |
|
busco
|
Change busco multi-fasta test md5sum to contains
|
2022-06-13 08:51:41 +00:00 |
|
bwa
|
Samtools version update (#1507)
|
2022-04-11 14:26:28 +02:00 |
|
bwamem2
|
Add new boolean sort_bam as input to be able to chose between sort and view in bwamem and bwamem2mem (#1125)
|
2021-12-08 14:31:27 +00:00 |
|
bwameth
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
cat
|
Update cat module (#1469)
|
2022-03-31 13:42:44 +02:00 |
|
cellranger
|
Remove empty file md5sum
|
2022-06-10 11:53:28 +02:00 |
|
centrifuge
|
Add centrifuge_kreport module (#1514)
|
2022-04-13 15:33:51 +02:00 |
|
checkm/lineagewf
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
chromap
|
Samtools version update (#1507)
|
2022-04-11 14:26:28 +02:00 |
|
clonalframeml
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
cmseq/polymut
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
cnvkit
|
added fasta_fai as input + changed if statements
|
2022-06-02 12:57:50 +02:00 |
|
cnvpytor
|
combine multiple pytor
|
2022-05-05 23:59:12 +02:00 |
|
controlfreec
|
Fix Controlfreec: Add stub runs to test single sample input & make conda work with R scripts (#1504)
|
2022-04-08 11:43:40 +02:00 |
|
cooler
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
csvtk
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
custom
|
tests: add missing paths to config
|
2022-05-11 18:17:27 +02:00 |
|
cutadapt
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
damageprofiler
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
dastool
|
Update DASTool to 1.1.4 (#1471)
|
2022-04-01 11:33:07 +02:00 |
|
dedup
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
deeparg
|
Deeparg singularity container fix 2 (#1406)
|
2022-03-18 16:21:55 +01:00 |
|
deeptools
|
changed container + add cram2bam conversion
|
2022-06-02 10:38:05 +02:00 |
|
deepvariant
|
Update version & add intervals usage (#1214)
|
2022-01-17 16:40:31 +01:00 |
|
delly/call
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
diamond
|
Merge remote-tracking branch 'origin' into motus_profile
|
2022-05-05 09:41:13 -04:00 |
|
dragmap
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
dragonflye
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
dshbio
|
Update dsh-bio to version 2.0.7, add support for compressed GFA 1.0 format (#1207)
|
2022-01-17 09:24:40 +00:00 |
|
ectyper
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
elprep
|
Merge remote-tracking branch 'origin' into motus_profile
|
2022-05-05 09:41:13 -04:00 |
|
emmtyper
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
ensemblvep
|
Update tests/modules/ensemblvep/main.nf
|
2022-06-09 11:55:41 +02:00 |
|
expansionhunter
|
add stub to modules used in raredisease pipeline (#1206)
|
2022-03-28 17:48:39 +02:00 |
|
faqcs
|
Faqcs patch to add tests for --debug output (#1368)
|
2022-03-02 08:53:05 -05:00 |
|
fargene
|
takes gunzip out of fargene main.nf (#1090)
|
2021-11-29 14:32:23 +01:00 |
|
fastani
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
fastp
|
Bump software versions for viralrecon modules (#1198)
|
2022-01-07 17:52:39 +00:00 |
|
fastqc
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
fastqscan
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
fasttree
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
fgbio
|
Added UMI sub-workflow (#1098)
|
2021-12-09 11:16:40 +01:00 |
|
filtlong
|
Fix config for tests
|
2022-05-31 20:07:52 +02:00 |
|
flash
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
freebayes
|
Update intervals (#1278)
|
2022-02-10 10:34:22 +01:00 |
|
gamma/gamma
|
fixed test.yml
|
2022-05-24 19:27:09 -04:00 |
|
gatk
|
Add GATK indelrealigner tests
|
2022-06-08 21:14:08 +02:00 |
|
gatk4
|
Merge branch 'master' into update_spark
|
2022-06-09 15:49:31 +02:00 |
|
genmap
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
genomescope2
|
Update tests/modules/genomescope2/test.yml
|
2022-05-13 11:27:42 +02:00 |
|
genrich
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
gffread
|
Replace remaining task.ext.suffix with task.ext.prefix (#1117)
|
2021-12-07 15:00:43 +01:00 |
|
glnexus
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
graphmap2
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
gstama
|
New Module: gstama/polyacleanup (#1468)
|
2022-03-31 09:11:51 -04:00 |
|
gtdbtk/classifywf
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
gubbins
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
gunc
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
gunzip
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
hamronization
|
Add hamronization/summarize (#1366)
|
2022-03-03 08:02:04 +01:00 |
|
haplocheck
|
fix: string interpolation and test input access
|
2022-06-08 09:08:59 -03:00 |
|
happy
|
Merge remote-tracking branch 'origin' into motus_profile
|
2022-05-05 09:41:13 -04:00 |
|
hicap
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
hifiasm
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
hisat2
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
hmmcopy
|
hmmcopy/mapCounter (#1175)
|
2021-12-17 15:39:50 +00:00 |
|
hmmer
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
|
hmtnote
|
Update main.nf
|
2022-05-16 15:20:15 +00:00 |
|
homer
|
Fix homer/maketagdirectory output collision (#1456)
|
2022-03-27 03:17:42 +00:00 |
|
hpsuissero
|
add module for hpsuisero (#1331)
|
2022-02-27 17:58:35 -07:00 |
|
ichorcna
|
Prettier (#1405)
|
2022-03-18 14:27:50 +01:00 |
|
idr
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
imputeme/vcftoprs
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
iqtree
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
ismapper
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
isoseq3
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
ivar
|
Patch fix artic/minion and ivar/variants modules (#1326)
|
2022-02-18 17:36:09 +00:00 |
|
jupyternotebook
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
kaiju
|
Kaiju2table module (#1545)
|
2022-04-22 11:26:30 +02:00 |
|
kallisto/index
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
kallistobustools
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
kat/hist
|
Update tests/modules/kat/hist/test.yml
|
2022-05-23 08:51:49 +02:00 |
|
khmer/normalizebymedian
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
kleborate
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
kraken2/kraken2
|
update to kraken2: breaking change - output channels renamed (#1525)
|
2022-04-21 14:33:59 +02:00 |
|
krona
|
Merge remote-tracking branch 'origin' into motus_profile
|
2022-05-05 09:41:13 -04:00 |
|
last
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
|
leehom
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
legsta
|
add module for legsta (#1319)
|
2022-02-18 17:42:18 -07:00 |
|
lima
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
lissero
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
lofreq
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
macrel/contigs
|
Add new module macrel/contigs (#1109)
|
2021-12-09 13:17:50 +01:00 |
|
macs2/callpeak
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
mafft
|
Add MAFFT module (#1351)
|
2022-02-28 00:40:24 -07:00 |
|
malt
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
|
maltextract
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
|
manta
|
Update tests/modules/manta/convertinversion/main.nf
|
2022-06-13 09:26:35 +02:00 |
|
mapdamage2
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
mash
|
Patch mash screen
|
2022-05-25 12:29:14 +00:00 |
|
mashtree
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
maxbin2
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
maxquant/lfq
|
corrected typos
|
2022-02-07 13:07:16 +01:00 |
|
mcroni
|
add module for mcroni (#1750)
|
2022-06-13 15:04:01 +02:00 |
|
md5sum
|
new module: md5sum
|
2022-05-06 09:20:40 +02:00 |
|
medaka
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
megahit
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
megan/rma2info
|
Add MEGAN/RMA2INFO (#1513)
|
2022-04-12 08:35:36 +02:00 |
|
meningotype
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
meryl
|
Merge branch 'master' into meryl_unionsum
|
2022-05-09 16:16:08 +02:00 |
|
metabat2
|
Update metabat2 output channels and compression (#1111)
|
2021-12-09 15:00:32 +01:00 |
|
metaphlan3
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
|
methyldackel
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
minia
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
miniasm
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
|
minimap2
|
Update minimap2/align module (#1537)
|
2022-04-26 16:32:20 +02:00 |
|
mlst
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
mobsuite/recon
|
add mobsuite_recon module (#1270)
|
2022-02-18 17:52:38 -07:00 |
|
mosdepth
|
Update main.nf
|
2022-05-25 19:38:12 +01:00 |
|
motus
|
Update tests/modules/motus/profile/test.yml
|
2022-05-12 20:55:54 +01:00 |
|
msisensor
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
msisensorpro
|
Add msisensorpro (#1267)
|
2022-02-09 21:05:49 +01:00 |
|
mtnucratio
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
multiqc
|
formatting
|
2022-06-08 14:42:58 +02:00 |
|
mummer
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
muscle
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
nanolyse
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
|
nanoplot
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
ncbigenomedownload
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
nextclade
|
Bump Nextclade version to 1.10.1 (#1236)
|
2022-01-27 12:53:14 +00:00 |
|
ngmaster
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
ngscheckmate/ncm
|
New module: NGSCheckMate (#1290)
|
2022-03-11 09:02:10 +00:00 |
|
nucmer
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
optitype
|
Add BAM indexes as input for optitype module. (#1388)
|
2022-03-15 17:02:40 +01:00 |
|
pairix
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
pairtools
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
|
panaroo/run
|
add module for panaroo, fix pirate tests (#1444)
|
2022-03-24 20:11:04 -06:00 |
|
pangolin
|
Bump Pangolin version to 3.1.20 (#1296)
|
2022-02-15 10:46:20 +00:00 |
|
paraclu
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
pbbam/pbmerge
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
|
pbccs
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
peddy
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
phantompeakqualtools
|
Add task.ext.args to phantompeakqualtools and finish the module (#1474)
|
2022-03-31 22:59:21 +01:00 |
|
phyloflash
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
picard
|
fix tests (again)
|
2022-05-22 06:54:09 +02:00 |
|
pirate
|
add module for panaroo, fix pirate tests (#1444)
|
2022-03-24 20:11:04 -06:00 |
|
plasmidid
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
plink
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
|
plink2
|
implement plink2/score module (#1259)
|
2022-03-07 13:02:40 -05:00 |
|
pmdtools/filter
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
porechop
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
|
preseq
|
Split preseq lcextrap and ccurve (#1440)
|
2022-03-25 17:11:40 +00:00 |
|
prinseqplusplus
|
Add PRINSEQPLUSPLUS (#1481)
|
2022-04-03 16:06:22 +02:00 |
|
prodigal
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
prokka
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
pycoqc
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
pydamage
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
qcat
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
qualimap
|
add qualimap with cram files + remove val from qualimap/bam, instead use empty list as everywhere else (#1320)
|
2022-02-18 09:43:53 +01:00 |
|
quast
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
racon
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
rapidnj
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
rasusa
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
|
raven
|
Raven assembler (#1087)
|
2022-02-01 11:47:01 +01:00 |
|
raxmlng
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
rgi/main
|
add module for rgi (#1321)
|
2022-02-18 17:23:44 -07:00 |
|
rhocall/annotate
|
update test
|
2022-06-08 16:36:02 +02:00 |
|
rmarkdownnotebook
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
roary
|
Update test.yml (#1419)
|
2022-03-19 15:06:21 +00:00 |
|
rsem
|
Bump STAR version to 2.7.10a for RSEM modules (#1573)
|
2022-04-27 19:21:26 +01:00 |
|
rseqc
|
Provide BAI when running rseqc/tin (#1177)
|
2021-12-17 10:00:09 +00:00 |
|
rtgtools/vcfeval
|
Small update on the output channels
|
2022-05-10 12:34:52 +02:00 |
|
salmon
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
samblaster
|
Samtools version update (#1507)
|
2022-04-11 14:26:28 +02:00 |
|
samtools
|
samtools mpileup now bgzips mpileup files
|
2022-06-11 13:32:53 +02:00 |
|
scoary
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
seacr/callpeak
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
seqkit
|
feat: add module for seqkit stats (#1466)
|
2022-03-30 23:01:17 +02:00 |
|
seqsero2
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
seqtk
|
Decrease indent in seqtk/seq versions.yml output (#1384)
|
2022-03-09 11:56:35 -05:00 |
|
sequenzautils
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
seqwish/induce
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
sexdeterrmine
|
Corrected test-datasets input
|
2022-05-23 17:08:40 +02:00 |
|
shasum
|
added sha256sum
|
2022-05-06 10:28:14 +02:00 |
|
shigatyper
|
Merge remote-tracking branch 'origin' into motus_profile
|
2022-05-05 09:41:13 -04:00 |
|
shovill
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
sistr
|
add module for sistr (#1323)
|
2022-02-18 17:33:48 -07:00 |
|
slimfastq
|
Merge remote-tracking branch 'origin' into motus_profile
|
2022-05-05 09:41:13 -04:00 |
|
snapaligner
|
fix tags
|
2022-05-06 18:57:17 +02:00 |
|
snippy/run
|
make prettier
|
2022-05-11 18:00:36 +00:00 |
|
snpdists
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
snpeff
|
greatly simplify syntax (#1121)
|
2021-12-07 11:18:12 +01:00 |
|
snpsift/split
|
Added new module snpsift/split (#1031)
|
2021-12-17 09:08:14 +01:00 |
|
snpsites
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
sourmash/sketch
|
feat: add sourmash sketch (#1287)
|
2022-02-15 12:30:28 +01:00 |
|
spades
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
spatyper
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
sratools
|
refactor: move files to custom section
|
2022-05-11 17:33:45 +02:00 |
|
srst2/srst2
|
Merge remote-tracking branch 'origin' into motus_profile
|
2022-05-05 09:41:13 -04:00 |
|
ssuissero
|
add module for ssuisero (#1329)
|
2022-02-27 20:04:03 -07:00 |
|
stadeniolib/scramble
|
new tool: staden_io_lib (#1499)
|
2022-04-08 09:54:15 -04:00 |
|
staphopiasccmec
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
star
|
Fix tests
|
2022-05-27 12:14:10 +01:00 |
|
stranger
|
add stubs for stranger (#1543)
|
2022-04-22 10:10:43 +02:00 |
|
strelka
|
Update intervals (#1278)
|
2022-02-10 10:34:22 +01:00 |
|
stringtie
|
Rename process from STRINGTIE to STRINGTIE_STRINGTIE (#1546)
|
2022-04-22 15:13:06 +01:00 |
|
subread/featurecounts
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
svdb
|
update svdb to version 2.5.2 (#1390)
|
2022-03-21 10:39:34 +01:00 |
|
tabix
|
Merge remote-tracking branch 'origin' into motus_profile
|
2022-05-05 09:41:13 -04:00 |
|
tbprofiler/profile
|
Fix formatting in yaml files, add yamllint config (#1279)
|
2022-02-15 11:15:27 +00:00 |
|
tiddit
|
Update tiddit to 3.1.0 (#1767)
|
2022-06-13 16:24:34 +02:00 |
|
transdecoder
|
Transdecoder predict (#1251)
|
2022-02-02 09:46:07 +01:00 |
|
trimgalore
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
ucsc
|
ucsc/wigtobigwig: add meta map (#1199)
|
2022-01-11 21:31:37 +00:00 |
|
ultra/pipeline
|
Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110)
|
2021-12-02 12:39:55 +00:00 |
|
umitools
|
Fix Conda tests
|
2022-05-23 22:39:12 +01:00 |
|
unicycler
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
untar
|
fix untar output dir
|
2022-06-02 11:09:55 +02:00 |
|
unzip
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
|
vardictjava
|
Moved the BED file to the main tuple
|
2022-05-03 15:31:05 +02:00 |
|
variantbam
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
vcfanno
|
Untar unzip meta (#1408)
|
2022-03-21 14:49:28 +01:00 |
|
vcflib/vcfuniq
|
Add new vcflib/vcfuniq module (#1208)
|
2022-01-14 18:18:11 +00:00 |
|
vcftools
|
Update all modules to new NF DSL2 syntax (#1099)
|
2021-11-26 07:58:40 +00:00 |
|
vsearch/usearchglobal
|
prettier
|
2022-05-30 13:35:12 +02:00 |
|
yara
|
Add samtools index to yara_mapper module (#1353)
|
2022-03-04 10:08:02 -05:00 |
