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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>University of Wyoming Honors Program: Laramie, Wyoming</h5><h2>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal</h2><h3><small><ul class=list-inline><li class=list-inline-item>Thomas A. Christensen II</li></ul></small></h3><h4>May 14, 2019</h4><p>The ChemE Car That Cud showcases Wyoming&rsquo;s dominant industries of agriculture
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>University of Wyoming Honors Program: Laramie, Wyoming</h5><h2>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal</h2><h3><small><ul class=list-inline></ul></small></h3><h4>May 14, 2019</h4><p>The ChemE Car That Cud showcases Wyoming&rsquo;s dominant industries of agriculture
and mining by utilizing rumen fluid from a cannulated beef cow to generate
hydrogen to be used in a hydrogen fuel cell and radioactive cesium, a byproduct
of uranium that is often obtained from Wyoming&rsquo;s mines, to time the car&rsquo;s stop.
The concentration of cesium-137 source is measured using the radioactive decay
of cesium shielded by aluminum. The painted aluminum chassis was obtained from a
previous team at UW, and modified using plastic k&rsquo;nex toys to adapt to the
current power source and stopping mechanism.</p><div class="card border-dark m-3 p-3"><a href=/academia/cheme-car/cud_cheme_car_web.pdf>/academia/cheme-car/cud_cheme_car_web.pdf</a>
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current power source and stopping mechanism.</p><div class="card border-dark m-3 p-3"><a href=https://doi.org/10.15786/13700938.v1>https://doi.org/10.15786/13700938.v1</a>
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purpose.</p></div><div class="tab-pane fade p-3" id=debug role=tabpanel><dl><dt>cardimage</dt><dd>cannulated-cows</dd><dt>categories</dt><dd>[thesis]</dd><dt>date</dt><dd>2019-05-14 00:00:00 +0000 UTC</dd><dt>draft</dt><dd>false</dd><dt>featured</dt><dd>true</dd><dt>iscjklanguage</dt><dd>false</dd><dt>journal</dt><dd>University of Wyoming Honors Program</dd><dt>lastmod</dt><dd>2019-05-14 00:00:00 +0000 UTC</dd><dt>link</dt><dd>https://doi.org/10.15786/13700938.v1</dd><dt>location</dt><dd>Laramie, Wyoming</dd><dt>people</dt><dd>[Thomas A. Christensen II]</dd><dt>publishdate</dt><dd>2019-05-14 00:00:00 +0000 UTC</dd><dt>tags</dt><dd>[chemical engineering AIChE radiation rumen microbial electrolysis cells]</dd><dt>title</dt><dd>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal</dd></dl></div></div></div></div></div></div></body></html>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>How to Build a Cow-Cud Fuel Cell - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>Idaho INBRE Summer Research Conference: Moscow, Idaho</h5><h2>How to Build a Cow-Cud Fuel Cell</h2><h3><small><ul class=list-inline><li class=list-inline-item>Thomas A. Christensen II</li></ul></small></h3><h4>August 1, 2018</h4></div></section><footer><div class="container-fluid footer-contents"><img src=https://millironx.com/images/brandedbull_hufc3ef4d1bebcd0898802af378829db58_10410_0x95_resize_box_3.png></div></footer></main></div></div><script src=https://millironx.com/js/fontawesome.min.6bc2dd5568cf8d07e2b66db77311aec6816cce50f3477ceac674c711fd4ec8eb.js></script>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>ACS ES&T Engineering</h5><h2>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</h2><h3><small><ul class=list-inline><li class=list-inline-item>Carson J. Silsby</li><li class=list-inline-item>Jonathan R. Counts</li><li class=list-inline-item>Thomas A. Christensen II</li><li class=list-inline-item>Mark F. Roll</li><li class=list-inline-item>Kristopher V. Waynant</li><li class=list-inline-item>James G. Moberly</li></ul></small></h3><h4>September 2, 2022</h4><p>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured. Variations in hydrogel crosslinking conditions, polymer composition, and solvent ionic strength were investigated to understand how each influenced hydronium ion diffusivity. A three-way ANOVA indicated that the ionic strength, membrane type, and crosslinking method significantly (<em>p</em> &lt; 0.001) contributed to changes in hydronium ion mass transfer. Hydronium ion diffusion increased with ionic strength, counter to what is observed in aqueous-only (no polymer) solutions. Co-occurring mechanisms correlated to increased hydronium ion diffusion with ionic strength included an increased water fraction within hydrogel matrices and hydrogel contraction. Measured diffusion rates determined in this study provide first principal design information to further optimize encapsulating hydrogels for bioremediation.</p><div class="card border-dark m-3 p-3"><a href=https://doi.org/10.1021/acsestengg.2c00107>https://doi.org/10.1021/acsestengg.2c00107</a>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>ACS ES&amp;T Engineering</h5><h2>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</h2><h3><small><ul class=list-inline></ul></small></h3><h4>September 2, 2022</h4><p>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be
hindered by high contaminant concentrations and acids generated during
remediation. Encapsulating microbes in hydrogels may provide a protective,
tunable environment from inhibiting compounds; however, current approaches to
formulate successful encapsulated systems rely on trial and error rather than
engineering approaches because fundamental information on mass-transfer
coefficients is lacking. To address this knowledge gap, hydronium ion
mass-transfer rates through two commonly used hydrogel materials, poly(vinyl
alcohol) and alginic acid, under two solidification methods (chemical and
cryogenic) were measured. Variations in hydrogel crosslinking conditions,
polymer composition, and solvent ionic strength were investigated to understand
how each influenced hydronium ion diffusivity. A three-way ANOVA indicated that
the ionic strength, membrane type, and crosslinking method significantly (<em>p</em> &lt;
0.001) contributed to changes in hydronium ion mass transfer. Hydronium ion
diffusion increased with ionic strength, counter to what is observed in
aqueous-only (no polymer) solutions. Co-occurring mechanisms correlated to
increased hydronium ion diffusion with ionic strength included an increased
water fraction within hydrogel matrices and hydrogel contraction. Measured
diffusion rates determined in this study provide first principal design
information to further optimize encapsulating hydrogels for bioremediation.</p><div class="card border-dark m-3 p-3"><a href=https://doi.org/10.1021/acsestengg.2c00107>https://doi.org/10.1021/acsestengg.2c00107</a>
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and toolkits in building it. I dedicate this space to
acknowledging them all.</p><table class="table table-condensed table-responsive table-striped"><tr><th>Project name</th><th>URL</th><th>License</th></tr><tr><th>Hugo</th><td><a href=https://gohugo.io/>gohugo.io</a></td><td><a href=https://github.com/gohugoio/hugo/blob/master/LICENSE>Apache License v2</a></td></tr><tr><th>Node.js</th><td><a href=https://nodejs.org/>nodejs.org</a></td><td><a href=https://github.com/nodejs/node/blob/HEAD/LICENSE>MIT License</a></td></tr><tr><th>Bootstrap 5</th><td><a href=https://getbootstrap.com/>getbootstrap.com</a></td><td><a href=https://github.com/twbs/bootstrap/blob/main/LICENSE>MIT License</a></td></tr><tr><th>Bootswatch Lux 5</th><td><a href=https://bootswatch.com/lux/>bootswatch.com</a></td><td><a href=https://github.com/thomaspark/bootswatch/blob/v5/LICENSE>MIT License</a></td></tr><tr><th>JQuery 3</th><td><a href=https://jquery.com/>jquery.com</a></td><td><a href=https://jquery.org/license>MIT License</a></td></tr><tr><th>Font Awesome 6</th><td><a href=https://fontawesome.com/>fontawesome.com</a></td><td><a href=https://fontawesome.com/license/>Font Awesome Pro License</a></td></tr><tr><th>Get S*** Done Toolkit</th><td><a href=https://www.creative-tim.com/product/get-shit-done-kit>creative-tim.com</a></td><td><a href=https://github.com/timcreative/freebies/blob/master/LICENSE.md>MIT License</a></td></tr><tr><th>FitText</th><td><a href=http://fittextjs.com/>fittextjs.com</a></td><td><a href=http://www.wtfpl.net/>WTFPL License</a></td></tr><tr><th>jQuery Mask Plugin</th><td><a href=https://igorescobar.github.io/jQuery-Mask-Plugin/>igorescobar.github.io</a></td><td><a href=https://github.com/igorescobar/jQuery-Mask-Plugin/blob/master/LICENSE>MIT License</a></td></tr><tr><th>PostCSS</th><td><a href=https://postcss.org/>postcss.com</a></td><td><a href=https://github.com/postcss/postcss/blob/main/LICENSE>MIT License</a></td></tr><tr><th>PurgeCSS</th><td><a href=https://purgecss.com/>purgecss.com</a></td><td><a href=https://github.com/FullHuman/purgecss/blob/main/LICENSE>MIT License</a></td></tr></table></div><div class="tab-pane fade p-3" id=privacy role=tabpanel><p>I take privacy very seriously. That said, I do need
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purpose.</p></div><div class="tab-pane fade p-3" id=debug role=tabpanel><dl><dt>categories</dt><dd>[paper]</dd><dt>date</dt><dd>2022-09-02 00:00:00 +0000 UTC</dd><dt>draft</dt><dd>false</dd><dt>featured</dt><dd>false</dd><dt>iscjklanguage</dt><dd>false</dd><dt>journal</dt><dd>ACS ES&amp;T Engineering</dd><dt>lastmod</dt><dd>2022-09-02 00:00:00 +0000 UTC</dd><dt>link</dt><dd>https://doi.org/10.1021/acsestengg.2c00107</dd><dt>people</dt><dd>[Carson J. Silsby Jonathan R. Counts Thomas A. Christensen II Mark F. Roll Kristopher V. Waynant James G. Moberly]</dd><dt>publishdate</dt><dd>2022-09-02 00:00:00 +0000 UTC</dd><dt>tags</dt><dd>[diffusion hydrogels ionic strength polymers transport properties]</dd><dt>title</dt><dd>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</dd></dl></div></div></div></div></div></div></body></html>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Academic Publications and Presentations - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Publications and Presentations</h1></div><div class=img-src style=background-image:url(/images/library.jpg)></div><div class="img-src blur" style=background-image:url(/images/library_hu6756e41dd5621a1e254550fbe815c3a2_204150_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"><h2>Selected Presentations</h2><div class="d-flex py-2"><div class=px-2><h3><i class="fad fa-fw fa-book" data-bs-toggle=tooltip title=Paper></i></h3><a class="btn btn-secondary dogear" href=https://doi.org/10.1016/j.vetmic.2022.109447 data-bs-toggle=tooltip title="Full text"><i class="fad fa-file-alt"></i></a></div><div class="flex-grow-1 px-2"><h3><a href=https://millironx.com/academia/rotavirus-virome/>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</a></h3>Tyler Doerksen,
<strong>Thomas A. Christensen II</strong>,
Andrea Lu,
Lance Noll,
Jianfa Bai,
Jamie Henningson,
Rachel Palinski<br>Veterinary Microbiology:
(27 Apr 2022)<br>Keywords:
<a href=#>porcine rotavirus</a>
<a href=#>porcine enteric disease</a>
<a href=#>virome</a>
<a href=#>rotavirus</a><br><details><summary>Abstract</summary><p>Enteric disease is the predominant cause of morbidity and mortality in young
mammals including pigs. Viral species involved in porcine enteric disease
complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses
and pestiviruses among others. The virome of three groups of swine samples
submitted to the Kansas State University Veterinary Diagnostic Laboratory for
routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a
Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group. All
groups were designated by qRT-PCR results testing for Porcine Rotavirus A, B, C
and H such that samples positive for RVA only went in the RVA group, samples
positive for >1 rotavirus went in the RV group and samples negative for all were
grouped in the RVNeg group. All of the animals had clinical enteric disease
resulting in scours and swollen joints/lameness, enlarged heart and/or a cough.
All samples were metagenomic sequenced and analyzed for viral species
composition that identified 14 viral species and eight bacterial viruses/phages.
Sapovirus and Escherichia coli phages were found at a high prevalence in RVA and
RV samples but were found at low or no prevalence in the RV Neg samples.
Picobirnavirus was identified at a high proportion and prevalence in RV Neg and
RV samples but at a low prevalence in the RVA group. A sequence analysis of the
possible host of Picobirnaviruses revealed fungi as the most likely host.
Non-rotaviral diversity was highest in RVA samples followed by RV then RV Neg
samples. Various sequences were extracted from the sample reads and a
phylogenetic update was provided showing a high prevalence of G9 and P[23] RVA
genotypes. These data are important for pathogen surveillance and control
measures</p></details></div></div><div class="d-flex py-2"><div class=px-2><h3><i class="fad fa-fw fa-graduation-cap" data-bs-toggle=tooltip title=Thesis></i></h3><a class="btn btn-secondary dogear" href=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2 data-bs-toggle=tooltip title="Full text"><i class="fad fa-file-alt"></i></a></div><div class="flex-grow-1 px-2"><h3><a href=https://millironx.com/academia/thesis/>Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers</a></h3><strong>Thomas A. Christensen II</strong><br>University of Idaho:
Moscow, Idaho
(07 Aug 2020)<br>Keywords:
<a href=#>bioremediation</a>
<a href=#>polyoxometalate</a>
<a href=#>hydrogel polymers</a>
<a href=#>proton transport</a>
<a href=#>chemical engineering</a><br><details><summary>Abstract</summary><p>Polyoxometalate clusters embedded into hydrogel biobeads may be able to solve
the challenges posed by free proton generation during remediation of
trichloroethylene by acting as buffers and reducing protons to hydrogen gas. In
this thesis, the challenges posed by systems that contain both diffusion and
reaction processes for protons are considered mathematically, and a computer
simulation to was developed to prove the relationship between diaphragm cell lag
period and reactive capabilities of membranes. Two polyoxometalate compounds,
sodium decavanadate and alumina sulfate, were successfully incorporated into a
poly(vinyl alcohol) hydrogel membrane, and the diffusivity changes associated
with each compound was determined. It was found that the diffusivity of protons
through an unmodified 10% w/v poly(vinyl alcohol) membrane was 1.76 ×
10<sup>-5</sup>
cm<sup>2</sup>
s<sup>-1</sup>
, the diffusivity through a
10%/2% w/w/v poly(vinyl alcohol)/sodium decavanadate membrane was 3.10 ×
10<sup>-6</sup>
cm<sup>2</sup>
s<sup>-1</sup>
, and the diffusivity through a
10%/2% w/w/v poly(vinyl alcohol)/alumina sulfate membrane was 3.32 ×
10<sup>-7</sup>
cm<sup>2</sup>
s<sup>-1</sup>
. Through analysis of the
diaphragm cell lag period, it was found the incorporation of sodium decavanadate
did not increase the reactivity of a poly(vinyl alcohol) hydrogel, and
incorporation of alumina sulfate lowered the reactivity. These results indicate
that polyoxometalate integration into hydrogel membranes is feasible, but does
not provide any advantage to a bioremediation scenario.</p></details></div></div><div class="d-flex py-2"><div class=px-2><h3><i class="fad fa-fw fa-presentation" data-bs-toggle=tooltip title=Poster></i></h3><a class="btn btn-secondary dogear" href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf data-bs-toggle=tooltip title="Full text"><i class="fad fa-file-alt"></i></a></div><div class="flex-grow-1 px-2"><h3><a href=https://millironx.com/academia/metagenomics/>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</a></h3><strong>Thomas A. Christensen II</strong>,
Kathy J. Austin,
Kristi M. Cammack,
Hannah C. Cunningham-Hollinger<br>Westion Section American Society of Animal Science Annual Meeting:
Boise, Idaho
(12 Jun 2019)<br>Keywords:
<a href=#>gestation</a>
<a href=#>metagenomics</a>
<a href=#>microbiome</a>
<a href=#>rumen</a><br><details><summary>Abstract</summary><p>Early colonization of the rumen microbiome is critical to host health and long
term performance. Factors that influence early colonization include maternal
factors such as gestational nutrition and mode of delivery. Therefore, we
hypothesized that late gestational nutrition and mode of delivery would
influence the calf rumen microbiome. Our objectives were to determine if
nutrient restriction during late gestation alters the calf rumen microbiome and
determine if ruminal microbiome composition differs in calves born vaginally
versus caesarean. Late gestating Angus cows were randomly allocated to one of
three treatment groups: control (<strong>CON</strong>; n = 6), caesarean section (<strong>CS</strong>; n =
4), and nutrient restricted (<strong>NR</strong>; n = 5), where CON were fed DDGS and hay to
meet NRC requirements and calved naturally; CS were fed similarly to CON and
calves were born via caesarean section; and NR were fed at a level to reduce BCS
by 1.5-2.0 points over the last trimester compared to CON and calved naturally.
Rumen fluid was collected via oral lavage prior to partition from cows and at d
7 from calves. Microbial DNA was isolated from the rumen fluid and metagenomic
shotgun sequencing was performed using the Illumina HiSeq 2500 platform.
Sequence data were analyzed using Metaxa2 for taxonomic assignment followed by
QIIME1 and QIIME2 to determine differential abundance and alpha- and
beta-diversity differences. There were no significant differences in
alpha-diversity as measured by shannon index across treatment groups for cows
(<em>P</em> = 0.239), but there were significant differences for calves (<em>P</em> = 0.015).
Similarly, there were no significant differences in beta-diversity as measured
by the bray-curtis dissimilarity matrix for cows (<em>P</em> = 0.059), but there were
significant differences for calves (<em>P</em> = 0.007). Alpha-diversity differed (<em>P</em>
&lt; 0.001) between cows and calves, with cows having increased species richness
compared to calves. Beta-diversity also differed (<em>P</em> = 0.001) between cows and
calves. At total of 410 taxa were differentially abundant (<em>P</em> &lt; 0.01) between
cows and calves. These results suggest that the mature rumen microbiome of cows
is able to withstand changes in feed intake, however the calf microbiome is
susceptible to alteration by maternal factors. These data also suggest that
there may be opportunities to develop management strategies during late
gestation that influence calf health and performance long-term.</p></details></div></div><div class="d-flex py-2"><div class=px-2><h3><i class="fad fa-fw fa-graduation-cap" data-bs-toggle=tooltip title=Thesis></i></h3><a class="btn btn-secondary dogear" href=/academia/cheme-car/cud_cheme_car_web.pdf data-bs-toggle=tooltip title="Full text"><i class="fad fa-file-alt"></i></a></div><div class="flex-grow-1 px-2"><h3><a href=https://millironx.com/academia/cheme-car/>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal</a></h3><strong>Thomas A. Christensen II</strong><br>University of Wyoming Honors Program:
Laramie, Wyoming
(14 May 2019)<br>Keywords:
<a href=#>chemical engineering</a>
<a href=#>AIChE</a>
<a href=#>radiation</a>
<a href=#>rumen</a>
<a href=#>microbial electrolysis cells</a><br><details><summary>Abstract</summary><p>The ChemE Car That Cud showcases Wyoming&rsquo;s dominant industries of agriculture
and mining by utilizing rumen fluid from a cannulated beef cow to generate
hydrogen to be used in a hydrogen fuel cell and radioactive cesium, a byproduct
of uranium that is often obtained from Wyoming&rsquo;s mines, to time the car&rsquo;s stop.
The concentration of cesium-137 source is measured using the radioactive decay
of cesium shielded by aluminum. The painted aluminum chassis was obtained from a
previous team at UW, and modified using plastic k&rsquo;nex toys to adapt to the
current power source and stopping mechanism.</p></details></div></div><hr><h2>Other Presentations</h2><div class="d-flex py-2"><div class=px-2><h3><i class="fad fa-fw fa-book" data-bs-toggle=tooltip title=Paper></i></h3><a class="btn btn-secondary dogear" href=https://doi.org/10.1021/acsestengg.2c00107 data-bs-toggle=tooltip title="Full text"><i class="fad fa-file-alt"></i></a></div><div class="flex-grow-1 px-2"><h3><a href=https://millironx.com/academia/hydronium-pva/>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</a></h3>Carson J. Silsby,
Jonathan R. Counts,
<strong>Thomas A. Christensen II</strong>,
Mark F. Roll,
Kristopher V. Waynant,
James G. Moberly<br>ACS ES&T Engineering:
(02 Sep 2022)<br>Keywords:
<a href=#>diffusion</a>
<a href=#>hydrogels</a>
<a href=#>ionic strength</a>
<a href=#>polymers</a>
<a href=#>transport properties</a><br></div></div><div class="d-flex py-2"><div class=px-2><h3><i class="fad fa-fw fa-presentation" data-bs-toggle=tooltip title=Poster></i></h3><a class="btn btn-secondary dogear" href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf data-bs-toggle=tooltip title="Full text"><i class="fad fa-file-alt"></i></a></div><div class="flex-grow-1 px-2"><h3><a href=https://millironx.com/academia/pva-aiche/>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</a></h3><strong>Thomas A. Christensen II</strong>,
Samuel R. Wolfe,
Jonathan Counts,
Mark F. Roll,
Kristopher V. Waynant,
James G. Moberly<br>AIChE Annual Meeting:
Pittsburgh, Pennsylvania
(29 Oct 2018)<br>Keywords:
<a href=#>bioremediation</a>
<a href=#>polyoxometalate</a>
<a href=#>hydrogel polymers</a>
<a href=#>proton transport</a>
<a href=#>chemical engineering</a><br></div></div><div class="d-flex py-2"><div class=px-2><h3><i class="fad fa-fw fa-podium" data-bs-toggle=tooltip title=Presentation></i></h3></div><div class="flex-grow-1 px-2"><h3><a href=https://millironx.com/academia/how-to-build-a-cow-cud-fuel-cell/>How to Build a Cow-Cud Fuel Cell</a></h3><strong>Thomas A. Christensen II</strong><br>Idaho INBRE Summer Research Conference:
Moscow, Idaho
(01 Aug 2018)<br></div></div><div class="d-flex py-2"><div class=px-2><h3><i class="fad fa-fw fa-presentation" data-bs-toggle=tooltip title=Poster></i></h3></div><div class="flex-grow-1 px-2"><h3><a href=https://millironx.com/academia/pva-inbre/>Measuring diffusion of protons in polyvinyalginate</a></h3><strong>Thomas A. Christensen II</strong>,
Jonathan Counts,
James G. Moberly<br>Idaho INBRE Summer Research Conference:
Moscow, Idaho
(31 Jul 2018)<br></div></div></div></section><footer><div class="container-fluid footer-contents"><img src=https://millironx.com/images/brandedbull_hufc3ef4d1bebcd0898802af378829db58_10410_0x95_resize_box_3.png></div></footer></main></div></div><script src=https://millironx.com/js/fontawesome.min.6bc2dd5568cf8d07e2b66db77311aec6816cce50f3477ceac674c711fd4ec8eb.js></script>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Publications and Presentations</h1></div><div class=img-src style=background-image:url(/images/library.jpg)></div><div class="img-src blur" style=background-image:url(/images/library_hu6756e41dd5621a1e254550fbe815c3a2_204150_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"><blockquote><p>I have spent too long in school and not enough time in the middle of nowhere</p><p>&ndash; Baxter Black, DVM</p></blockquote><p>During my time in academia, I have amassed a few notable accomplishments. Of
course, as the old saying goes, &ldquo;if it isn&rsquo;t published, then it never happened,&rdquo;
so here is a list of everything that actually happened. Several of these
articles are also available on
<a href="https://scholar.google.com/citations?user=gbP4RDgAAAAJ">my Google Scholar page</a>,
but this is the complete list.</p></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1101/2023.10.20.563221><h3 class=card-title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</h3></a><div>23 Oct 2023</div><a href=/people/sofia-stamouli/ class="icon-link card-link"><i class="fad fa-user"></i> Sofia Stamouli</a>
<a href=/people/moritz-e.-beber/ class="icon-link card-link"><i class="fad fa-user"></i> Moritz E. Beber</a>
<a href=/people/tanja-normark/ class="icon-link card-link"><i class="fad fa-user"></i> Tanja Normark</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/lili-andersson-li/ class="icon-link card-link"><i class="fad fa-user"></i> Lili Andersson-Li</a>
<a href=/people/maxime-borry/ class="icon-link card-link"><i class="fad fa-user"></i> Maxime Borry</a>
<a href=/people/mahwash-jamy/ class="icon-link card-link"><i class="fad fa-user"></i> Mahwash Jamy</a>
<a href=/people/nf-core-community/ class="icon-link card-link"><i class="fad fa-user"></i> nf-core community</a>
<a href=/people/james-a.-fellows-yate/ class="icon-link card-link"><i class="fad fa-user"></i> James A. Fellows Yate</a><p class=card-text>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.
<strong><small><a href=https://doi.org/10.1101/2023.10.20.563221>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/genomics/ class="icon-link card-link"><i class="fad fa-tag"></i> genomics</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1021/acsestengg.2c00107><h3 class=card-title>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</h3></a><div>02 Sep 2022</div><a href=/people/carson-j.-silsby/ class="icon-link card-link"><i class="fad fa-user"></i> Carson J. Silsby</a>
<a href=/people/jonathan-r.-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan R. Counts</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured.
<strong><small><a href=https://doi.org/10.1021/acsestengg.2c00107>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/diffusion/ class="icon-link card-link"><i class="fad fa-tag"></i> diffusion</a>
<a href=/tags/hydrogels/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogels</a>
<a href=/tags/ionic-strength/ class="icon-link card-link"><i class="fad fa-tag"></i> ionic strength</a>
<a href=/tags/polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> polymers</a>
<a href=/tags/transport-properties/ class="icon-link card-link"><i class="fad fa-tag"></i> transport properties</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1016/j.vetmic.2022.109447><h3 class=card-title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</h3></a><div>27 Apr 2022</div><a href=/people/tyler-doerksen/ class="icon-link card-link"><i class="fad fa-user"></i> Tyler Doerksen</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/andrea-lu/ class="icon-link card-link"><i class="fad fa-user"></i> Andrea Lu</a>
<a href=/people/lance-noll/ class="icon-link card-link"><i class="fad fa-user"></i> Lance Noll</a>
<a href=/people/jianfa-bai/ class="icon-link card-link"><i class="fad fa-user"></i> Jianfa Bai</a>
<a href=/people/jamie-henningson/ class="icon-link card-link"><i class="fad fa-user"></i> Jamie Henningson</a>
<a href=/people/rachel-palinski/ class="icon-link card-link"><i class="fad fa-user"></i> Rachel Palinski</a><p class=card-text>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.
<strong><small><a href=https://doi.org/10.1016/j.vetmic.2022.109447>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/porcine-rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine rotavirus</a>
<a href=/tags/porcine-enteric-disease/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine enteric disease</a>
<a href=/tags/virome/ class="icon-link card-link"><i class="fad fa-tag"></i> virome</a>
<a href=/tags/rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> rotavirus</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/thesis/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Thesis><i class="fad fa-graduation-cap fa-fw"></i></a></div><div class=card-body><a href=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2><h3 class=card-title>Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers</h3></a><div>07 Aug 2020</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a><p class=card-text>Polyoxometalate clusters embedded into hydrogel biobeads may be able to solve the challenges posed by free proton generation during remediation of trichloroethylene by acting as buffers and reducing protons to hydrogen gas. In this thesis, the challenges posed by systems that contain both diffusion and reaction processes for protons are considered mathematically, and a computer simulation to was developed to prove the relationship between diaphragm cell lag period and reactive capabilities of membranes.
<strong><small><a href=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/bioremediation/ class="icon-link card-link"><i class="fad fa-tag"></i> bioremediation</a>
<a href=/tags/polyoxometalate/ class="icon-link card-link"><i class="fad fa-tag"></i> polyoxometalate</a>
<a href=/tags/hydrogel-polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogel polymers</a>
<a href=/tags/proton-transport/ class="icon-link card-link"><i class="fad fa-tag"></i> proton transport</a>
<a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf><h3 class=card-title>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</h3></a><div>12 Jun 2019</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/kathy-j.-austin/ class="icon-link card-link"><i class="fad fa-user"></i> Kathy J. Austin</a>
<a href=/people/kristi-m.-cammack/ class="icon-link card-link"><i class="fad fa-user"></i> Kristi M. Cammack</a>
<a href=/people/hannah-c.-cunningham-hollinger/ class="icon-link card-link"><i class="fad fa-user"></i> Hannah C. Cunningham-Hollinger</a><p class=card-text>Early colonization of the rumen microbiome is critical to host health and long term performance. Factors that influence early colonization include maternal factors such as gestational nutrition and mode of delivery. Therefore, we hypothesized that late gestational nutrition and mode of delivery would influence the calf rumen microbiome. Our objectives were to determine if nutrient restriction during late gestation alters the calf rumen microbiome and determine if ruminal microbiome composition differs in calves born vaginally versus caesarean.
<strong><small><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/gestation/ class="icon-link card-link"><i class="fad fa-tag"></i> gestation</a>
<a href=/tags/metagenomics/ class="icon-link card-link"><i class="fad fa-tag"></i> metagenomics</a>
<a href=/tags/microbiome/ class="icon-link card-link"><i class="fad fa-tag"></i> microbiome</a>
<a href=/tags/rumen/ class="icon-link card-link"><i class="fad fa-tag"></i> rumen</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/thesis/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Thesis><i class="fad fa-graduation-cap fa-fw"></i></a></div><div class=card-body><img class="img img-thumbnail float-start me-3 md-max-width-33" src=/academia/cheme-car/thumbnail_hua27ceb9f6c1a8b01057b70de792ffbc6_1566619_600x0_resize_q75_box.jpg alt="Thumbnail of thumbnail.jpg">
<a href=https://doi.org/10.15786/13700938.v1><h3 class=card-title>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal</h3></a><div>14 May 2019</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a><p class=card-text>The ChemE Car That Cud showcases Wyoming&rsquo;s dominant industries of agriculture and mining by utilizing rumen fluid from a cannulated beef cow to generate hydrogen to be used in a hydrogen fuel cell and radioactive cesium, a byproduct of uranium that is often obtained from Wyoming&rsquo;s mines, to time the car&rsquo;s stop. The concentration of cesium-137 source is measured using the radioactive decay of cesium shielded by aluminum. The painted aluminum chassis was obtained from a previous team at UW, and modified using plastic k&rsquo;nex toys to adapt to the current power source and stopping mechanism.
<strong><small><a href=https://doi.org/10.15786/13700938.v1>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a>
<a href=/tags/aiche/ class="icon-link card-link"><i class="fad fa-tag"></i> AIChE</a>
<a href=/tags/radiation/ class="icon-link card-link"><i class="fad fa-tag"></i> radiation</a>
<a href=/tags/rumen/ class="icon-link card-link"><i class="fad fa-tag"></i> rumen</a>
<a href=/tags/microbial-electrolysis-cells/ class="icon-link card-link"><i class="fad fa-tag"></i> microbial electrolysis cells</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf><h3 class=card-title>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</h3></a><div>29 Oct 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/samuel-r.-wolfe/ class="icon-link card-link"><i class="fad fa-user"></i> Samuel R. Wolfe</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique challenges for cleanup because of its water solubility, density, and volatility. Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE results in acid generation that inhibits remediating microorganisms. Calcium alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting remediating microbes, however diffusion of TCE or its byproducts through these polymers is unknown. To measure the effective diffusion coefficient of TCE and byproducts through hydrogel membranes, we used a modified diaphragm cell.
<strong><small><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/bioremediation/ class="icon-link card-link"><i class="fad fa-tag"></i> bioremediation</a>
<a href=/tags/polyoxometalate/ class="icon-link card-link"><i class="fad fa-tag"></i> polyoxometalate</a>
<a href=/tags/hydrogel-polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogel polymers</a>
<a href=/tags/proton-transport/ class="icon-link card-link"><i class="fad fa-tag"></i> proton transport</a>
<a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/presentation/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Presentation><i class="fad fa-podium fa-fw"></i></a></div><div class=card-body><a href=/academia/how-to-build-a-cow-cud-fuel-cell/><h3 class=card-title>How to Build a Cow-Cud Fuel Cell</h3></a><div>01 Aug 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a><p class=card-text><strong><small><a href=/academia/how-to-build-a-cow-cud-fuel-cell/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/pva-inbre/><h3 class=card-title>Measuring diffusion of protons in polyvinyalginate</h3></a><div>31 Jul 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents unique challenges for cleanup because of its density and volatility. Use of microorganisms may be a promising remediation method, however metabolism of TCE results in acid buildup, which consequently impedes the ability of microorganisms to perform this remediation. Polyvinylalginate (PVA) shows promise as a useful shield for microorganisms carrying out bioremediation of TCE by surrounding them in a protective biofilm-like layer, however, key information is missing which relates diffusion of TCE or its metabolic products through PVA.
<strong><small><a href=/academia/pva-inbre/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>Westion Section American Society of Animal Science Annual Meeting: Boise, Idaho</h5><h2>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</h2><h3><small><ul class=list-inline><li class=list-inline-item>Thomas A. Christensen II</li><li class=list-inline-item>Kathy J. Austin</li><li class=list-inline-item>Kristi M. Cammack</li><li class=list-inline-item>Hannah C. Cunningham-Hollinger</li></ul></small></h3><h4>June 12, 2019</h4><p>Early colonization of the rumen microbiome is critical to host health and long
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>Westion Section American Society of Animal Science Annual Meeting: Boise, Idaho</h5><h2>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</h2><h3><small><ul class=list-inline></ul></small></h3><h4>June 12, 2019</h4><p>Early colonization of the rumen microbiome is critical to host health and long
term performance. Factors that influence early colonization include maternal
factors such as gestational nutrition and mode of delivery. Therefore, we
hypothesized that late gestational nutrition and mode of delivery would
@ -42,7 +42,30 @@ is able to withstand changes in feed intake, however the calf microbiome is
susceptible to alteration by maternal factors. These data also suggest that
there may be opportunities to develop management strategies during late
gestation that influence calf health and performance long-term.</p><div class="card border-dark m-3 p-3"><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf>/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf</a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>AIChE Annual Meeting: Pittsburgh, Pennsylvania</h5><h2>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</h2><h3><small><ul class=list-inline><li class=list-inline-item>Thomas A. Christensen II</li><li class=list-inline-item>Samuel R. Wolfe</li><li class=list-inline-item>Jonathan Counts</li><li class=list-inline-item>Mark F. Roll</li><li class=list-inline-item>Kristopher V. Waynant</li><li class=list-inline-item>James G. Moberly</li></ul></small></h3><h4>October 29, 2018</h4><p>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique
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challenges for cleanup because of its water solubility, density, and volatility.
Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE
results in acid generation that inhibits remediating microorganisms. Calcium
@ -28,7 +28,30 @@ chloride. These results aid in engineering biobeads and suggest that CA-PVA
hydrogel blends are effective in slowing diffusion of protons, buffering acids
produced by trichloroethylene metabolism, and remains suitable for encapsulation
of microorganisms involved in bioremediation.</p><div class="card border-dark m-3 p-3"><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf>/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf</a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Measuring diffusion of protons in polyvinyalginate - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Measuring diffusion of protons in polyvinyalginate - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>Idaho INBRE Summer Research Conference: Moscow, Idaho</h5><h2>Measuring diffusion of protons in polyvinyalginate</h2><h3><small><ul class=list-inline><li class=list-inline-item>Thomas A. Christensen II</li><li class=list-inline-item>Jonathan Counts</li><li class=list-inline-item>James G. Moberly</li></ul></small></h3><h4>July 31, 2018</h4><p>Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>Idaho INBRE Summer Research Conference: Moscow, Idaho</h5><h2>Measuring diffusion of protons in polyvinyalginate</h2><h3><small><ul class=list-inline></ul></small></h3><h4>July 31, 2018</h4><p>Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents
unique challenges for cleanup because of its density and volatility. Use of
microorganisms may be a promising remediation method, however metabolism of TCE
results in acid buildup, which consequently impedes the ability of
@ -30,7 +30,30 @@ seven-fold decrease in diffusivity compared to protons in water, with an
unexpected significant but as of yet unquantified adsorption capacity. These
results suggest that polyvinylalginate is effective in slowing diffusion of
protons and buffering these acids produced by trichloroethylene metabolism, and
remains suitable for encapsulation of microorganisms involved in bioremediation.</p></div></section><footer><div class="container-fluid footer-contents"><img src=https://millironx.com/images/brandedbull_hufc3ef4d1bebcd0898802af378829db58_10410_0x95_resize_box_3.png></div></footer></main></div></div><script src=https://millironx.com/js/fontawesome.min.6bc2dd5568cf8d07e2b66db77311aec6816cce50f3477ceac674c711fd4ec8eb.js></script>
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academia/rotavirus-virome/index.html
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>Veterinary Microbiology</h5><h2>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</h2><h3><small><ul class=list-inline><li class=list-inline-item>Tyler Doerksen</li><li class=list-inline-item>Thomas A. Christensen II</li><li class=list-inline-item>Andrea Lu</li><li class=list-inline-item>Lance Noll</li><li class=list-inline-item>Jianfa Bai</li><li class=list-inline-item>Jamie Henningson</li><li class=list-inline-item>Rachel Palinski</li></ul></small></h3><h4>April 27, 2022</h4><p>Enteric disease is the predominant cause of morbidity and mortality in young
Home</a></li><li class=nav-item><a class="nav-link pl-0" href=/contact/><i class="fad fa-file-signature fa-fw"></i>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>Veterinary Microbiology</h5><h2>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</h2><h3><small><ul class=list-inline></ul></small></h3><h4>April 27, 2022</h4><p>Enteric disease is the predominant cause of morbidity and mortality in young
mammals including pigs. Viral species involved in porcine enteric disease
complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses
and pestiviruses among others. The virome of three groups of swine samples
@ -34,7 +34,30 @@ samples. Various sequences were extracted from the sample reads and a
phylogenetic update was provided showing a high prevalence of G9 and P[23] RVA
genotypes. These data are important for pathogen surveillance and control
measures</p><div class="card border-dark m-3 p-3"><a href=https://doi.org/10.1016/j.vetmic.2022.109447>https://doi.org/10.1016/j.vetmic.2022.109447</a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>bioRxiv</h5><h2>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</h2><h3><small><ul class=list-inline></ul></small></h3><h4>October 23, 2023</h4><p>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline. It is designed for the automated and simultaneous classification and/or profiling of both short- and long-read metagenomic sequencing libraries against a 11 taxonomic classifiers and profilers as well as databases within a single pipeline run. Implemented in Nextflow and as part of the nf-core initiative, the pipeline benefits from high levels of scalability and portability, accommodating from small to extremely large projects on a wide range of computing infrastructure. It has been developed following best-practise software development practises and community support to ensure longevity and adaptability of the pipeline, to help keep it up to date with the field of metagenomics.</p><div class="card border-dark m-3 p-3"><a href=https://doi.org/10.1101/2023.10.20.563221>https://doi.org/10.1101/2023.10.20.563221</a>
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purpose.</p></div><div class="tab-pane fade p-3" id=debug role=tabpanel><dl><dt>categories</dt><dd>[paper]</dd><dt>date</dt><dd>2023-10-23 00:00:00 +0000 UTC</dd><dt>draft</dt><dd>false</dd><dt>featured</dt><dd>true</dd><dt>iscjklanguage</dt><dd>false</dd><dt>journal</dt><dd>bioRxiv</dd><dt>lastmod</dt><dd>2023-10-23 00:00:00 +0000 UTC</dd><dt>link</dt><dd>https://doi.org/10.1101/2023.10.20.563221</dd><dt>people</dt><dd>[Sofia Stamouli Moritz E. Beber Tanja Normark Thomas A. Christensen II Lili Andersson-Li Maxime Borry Mahwash Jamy nf-core community James A. Fellows Yate]</dd><dt>publishdate</dt><dd>2023-10-23 00:00:00 +0000 UTC</dd><dt>tags</dt><dd>[genomics]</dd><dt>title</dt><dd>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</dd></dl></div></div></div></div></div></div></body></html>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>University of Idaho: Moscow, Idaho</h5><h2>Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers</h2><h3><small><ul class=list-inline><li class=list-inline-item>Thomas A. Christensen II</li></ul></small></h3><h4>August 7, 2020</h4><p>Polyoxometalate clusters embedded into hydrogel biobeads may be able to solve
Home</a></li><li class=nav-item><a class="nav-link pl-0" href=/contact/><i class="fad fa-file-signature fa-fw"></i>
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&emsp; Milliron X</h1></header></div><section class="container-fluid list-main"><div class="container px-5"><h5>University of Idaho: Moscow, Idaho</h5><h2>Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers</h2><h3><small><ul class=list-inline></ul></small></h3><h4>August 7, 2020</h4><p>Polyoxometalate clusters embedded into hydrogel biobeads may be able to solve
the challenges posed by free proton generation during remediation of
trichloroethylene by acting as buffers and reducing protons to hydrogen gas. In
this thesis, the challenges posed by systems that contain both diffusion and
@ -40,7 +40,30 @@ did not increase the reactivity of a poly(vinyl alcohol) hydrogel, and
incorporation of alumina sulfate lowered the reactivity. These results indicate
that polyoxometalate integration into hydrogel membranes is feasible, but does
not provide any advantage to a bioremediation scenario.</p><div class="card border-dark m-3 p-3"><a href=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2>https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2</a>
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<script data-goatcounter=https://millironx.goatcounter.com/count async src=//gc.zgo.at/count.js></script><div class="modal fade" id=extras-modal tabindex=-1 aria-labelledby=extras-modal-label aria-hidden=true><div class="modal-dialog modal-dialog-scrollable modal-dialog-centered"><div class=modal-content><div class=modal-header><h1 class="modal-title fs-5">Bonus content</h1><button type=button class=btn-close data-bs-dismiss=modal aria-label=Close></button></div><div class=modal-body><ul class="nav nav-tabs" role=tablist><li class=nav-item role=presentation><a class="nav-link active" data-bs-toggle=tab href=#oss aria-selected=true role=tab>Open Source</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#privacy role=tab>Privacy</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#debug role=tab>Debug</a></li></ul><div class=tab-content><div class="tab-pane fade show active p-3" id=oss role=tabpanel><a rel=license href=http://creativecommons.org/licenses/by/4.0/><img class="img img-responsive" alt="Creative Commons License" style="border-width:0;display:block;margin:0 auto" src=https://i.creativecommons.org/l/by/4.0/88x31.png></a><p>&#8220;Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers&#8221; by
Thomas A. Christensen II is licensed under a
<a rel=license href=http://creativecommons.org/licenses/by/4.0/>Creative Commons Attribution 4.0 International License</a>.</p><p>All images, unless otherwise noted, are licensed under a
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acknowledging them all.</p><table class="table table-condensed table-responsive table-striped"><tr><th>Project name</th><th>URL</th><th>License</th></tr><tr><th>Hugo</th><td><a href=https://gohugo.io/>gohugo.io</a></td><td><a href=https://github.com/gohugoio/hugo/blob/master/LICENSE>Apache License v2</a></td></tr><tr><th>Node.js</th><td><a href=https://nodejs.org/>nodejs.org</a></td><td><a href=https://github.com/nodejs/node/blob/HEAD/LICENSE>MIT License</a></td></tr><tr><th>Bootstrap 5</th><td><a href=https://getbootstrap.com/>getbootstrap.com</a></td><td><a href=https://github.com/twbs/bootstrap/blob/main/LICENSE>MIT License</a></td></tr><tr><th>Bootswatch Lux 5</th><td><a href=https://bootswatch.com/lux/>bootswatch.com</a></td><td><a href=https://github.com/thomaspark/bootswatch/blob/v5/LICENSE>MIT License</a></td></tr><tr><th>JQuery 3</th><td><a href=https://jquery.com/>jquery.com</a></td><td><a href=https://jquery.org/license>MIT License</a></td></tr><tr><th>Font Awesome 6</th><td><a href=https://fontawesome.com/>fontawesome.com</a></td><td><a href=https://fontawesome.com/license/>Font Awesome Pro License</a></td></tr><tr><th>Get S*** Done Toolkit</th><td><a href=https://www.creative-tim.com/product/get-shit-done-kit>creative-tim.com</a></td><td><a href=https://github.com/timcreative/freebies/blob/master/LICENSE.md>MIT License</a></td></tr><tr><th>FitText</th><td><a href=http://fittextjs.com/>fittextjs.com</a></td><td><a href=http://www.wtfpl.net/>WTFPL License</a></td></tr><tr><th>jQuery Mask Plugin</th><td><a href=https://igorescobar.github.io/jQuery-Mask-Plugin/>igorescobar.github.io</a></td><td><a href=https://github.com/igorescobar/jQuery-Mask-Plugin/blob/master/LICENSE>MIT License</a></td></tr><tr><th>PostCSS</th><td><a href=https://postcss.org/>postcss.com</a></td><td><a href=https://github.com/postcss/postcss/blob/main/LICENSE>MIT License</a></td></tr><tr><th>PurgeCSS</th><td><a href=https://purgecss.com/>purgecss.com</a></td><td><a href=https://github.com/FullHuman/purgecss/blob/main/LICENSE>MIT License</a></td></tr></table></div><div class="tab-pane fade p-3" id=privacy role=tabpanel><p>I take privacy very seriously. That said, I do need
<i>some</i> info on how many people visit. As a compromise, this
site uses <a href=https://goatcounter.com>GoatCounter</a>, a
privacy-friendly (as much as possible) web analytics library.</p><p>You may view all analytics gathered at
<a href=https://millironx.goatcounter.com/>millironx.goatcounter.com</a>.</p><p>If you do not wish to participate in my site's analytics, you may
install a content-blocking extension into your browser and block
the domain
<code>gc.zgo.at</code>. I recommend either
<a href=https://github.com/gorhill/uBlock>uBlock Origin</a>
(instructions
<a href=https://github.com/gorhill/uBlock/wiki/Dashboard:-My-filters>here</a>) or <a href=https://noscript.net>NoScript</a> for this
purpose.</p></div><div class="tab-pane fade p-3" id=debug role=tabpanel><dl><dt>cardimage</dt><dd>library</dd><dt>categories</dt><dd>[thesis]</dd><dt>date</dt><dd>2020-08-07 00:00:00 +0000 UTC</dd><dt>draft</dt><dd>false</dd><dt>featured</dt><dd>true</dd><dt>iscjklanguage</dt><dd>false</dd><dt>journal</dt><dd>University of Idaho</dd><dt>lastmod</dt><dd>2020-08-07 00:00:00 +0000 UTC</dd><dt>link</dt><dd>https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2</dd><dt>location</dt><dd>Moscow, Idaho</dd><dt>people</dt><dd>[Thomas A. Christensen II]</dd><dt>publishdate</dt><dd>2020-08-07 00:00:00 +0000 UTC</dd><dt>tags</dt><dd>[bioremediation polyoxometalate hydrogel polymers proton transport chemical engineering]</dd><dt>title</dt><dd>Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers</dd></dl></div></div></div></div></div></div></body></html>

61
ai/index.html
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@ -1,21 +1,46 @@
<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Artificial Insemination - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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&ensp;
<span class="font-small-caps font-serif">Milliron X</span></a>
<a href class=navbar-toggler data-bs-toggle=collapse data-bs-target=.sidebar><span class=navbar-toggler-icon></span></a><div class="collapse navbar-collapse sidebar"><ul class="flex-column navbar-nav w-100 justify-content-between"><li class=nav-item><a class="nav-link pl-0" href=/><i class="fad fa-home fa-fw"></i>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Artificial Insemination</h1></div><div class=img-src style=background-image:url(/images/Ai-calf.jpg)></div><div class="img-src blur" style=background-image:url(/images/Ai-calf_hu1143faa57f5b1acd11a97eda612b56ee_469394_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"><p>I am licensed in the Great State of Wyoming as a food animal artificial
insemination technician, which means I can legally AI cows, goats, and sheep.
Practically speaking, I have only ever AIed cows, but my conception rates are
very good for both beef and dairy cows. When (if?) I standardize my rates, I
will include them here. Until then, you will have to <a href=/contact>contact me</a>
directly and we can negotiate prices then.</p></div></section><footer><div class="container-fluid footer-contents"><img src=https://millironx.com/images/brandedbull_hufc3ef4d1bebcd0898802af378829db58_10410_0x95_resize_box_3.png></div></footer></main></div></div><script src=https://millironx.com/js/fontawesome.min.6bc2dd5568cf8d07e2b66db77311aec6816cce50f3477ceac674c711fd4ec8eb.js></script>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Artificial Insemination</h1></div><div class=img-src style=background-image:url(/images/Ai-calf.jpg)></div><div class="img-src blur" style=background-image:url(/images/Ai-calf_hu1143faa57f5b1acd11a97eda612b56ee_469394_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"><section itemscope itemtype=http://schema.org/Product><h2 itemprop=name>Cattle artificial insemination services</h2><p>I am licensed in the Great State of Wyoming as a food animal artificial
insemination technician. I only offer AI services for cows, even though
legally I <em>could</em> AI cows, goats, and sheep. My services are most
readily available in the southeast Wyoming area or the Flint Hills of Kansas
depending on the time of year.</p><h3>Rate schedule</h3><div itemprop=offers itemscope itemtype=http://schema.org/Offer><table itemprop=priceSpecification itemscope itemtype=http://schema.org/CompoundPriceSpecification class="table table-responsive table-striped"><meta itemprop=price content="25.00"><meta itemprop=priceCurrency content="USD"><tr itemprop=priceComponent itemscope itemtype=http://schema.org/UnitPriceSpecification><th>Insemination</th><td><small>(per cow)</small></td><td><span itemprop=priceCurrency content="USD">$</span><span itemprop=price>25.00</span></td><td><small>5 cow minimum charge</small></td></tr><tr itemprop=priceComponent itemscope itemtype=http://schema.org/UnitPriceSpecification><th>Milage</th><td><small>(per mile, one-way)</small></td><td><span itemprop=priceCurrency content="USD">$</span><span itemprop=price>1.05</span></td><td><small>2.5 mile minimum charge</small></td></tr></table></div><p>I will provide all equipment <strong>except</strong> semen storage (liquid
nitrogen tank) and cattle handling (i.e., squeeze chute).</p><p>To get started, <a href=/contact>contact me</a>, and select the "I'm
hiring for artificial insemination" option.</p></section></div><div class=row data-masonry='{"percentPosition": true}'></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<script data-goatcounter=https://millironx.goatcounter.com/count async src=//gc.zgo.at/count.js></script><div class="modal fade" id=extras-modal tabindex=-1 aria-labelledby=extras-modal-label aria-hidden=true><div class="modal-dialog modal-dialog-scrollable modal-dialog-centered"><div class=modal-content><div class=modal-header><h1 class="modal-title fs-5">Bonus content</h1><button type=button class=btn-close data-bs-dismiss=modal aria-label=Close></button></div><div class=modal-body><ul class="nav nav-tabs" role=tablist><li class=nav-item role=presentation><a class="nav-link active" data-bs-toggle=tab href=#oss aria-selected=true role=tab>Open Source</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#privacy role=tab>Privacy</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#debug role=tab>Debug</a></li></ul><div class=tab-content><div class="tab-pane fade show active p-3" id=oss role=tabpanel><a rel=license href=http://creativecommons.org/licenses/by/4.0/><img class="img img-responsive" alt="Creative Commons License" style="border-width:0;display:block;margin:0 auto" src=https://i.creativecommons.org/l/by/4.0/88x31.png></a><p>&#8220;Artificial Insemination&#8221; by
Thomas A. Christensen II is licensed under a
<a rel=license href=http://creativecommons.org/licenses/by/4.0/>Creative Commons Attribution 4.0 International License</a>.</p><p>All images, unless otherwise noted, are licensed under a
<a rel=license href=http://creativecommons.org/licenses/by-nd/4.0/>Creative Commons Attribution-NoDerivatives 4.0 International
License</a>, instead.</p><hr><p>This site is open source!<br><a class="btn btn-dark" href=https://code.millironx.com/millironx/millironx.github.io><i class="fax fa-gitea"></i>&emsp;Get the code! &#187;</a>
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and toolkits in building it. I dedicate this space to
acknowledging them all.</p><table class="table table-condensed table-responsive table-striped"><tr><th>Project name</th><th>URL</th><th>License</th></tr><tr><th>Hugo</th><td><a href=https://gohugo.io/>gohugo.io</a></td><td><a href=https://github.com/gohugoio/hugo/blob/master/LICENSE>Apache License v2</a></td></tr><tr><th>Node.js</th><td><a href=https://nodejs.org/>nodejs.org</a></td><td><a href=https://github.com/nodejs/node/blob/HEAD/LICENSE>MIT License</a></td></tr><tr><th>Bootstrap 5</th><td><a href=https://getbootstrap.com/>getbootstrap.com</a></td><td><a href=https://github.com/twbs/bootstrap/blob/main/LICENSE>MIT License</a></td></tr><tr><th>Bootswatch Lux 5</th><td><a href=https://bootswatch.com/lux/>bootswatch.com</a></td><td><a href=https://github.com/thomaspark/bootswatch/blob/v5/LICENSE>MIT License</a></td></tr><tr><th>JQuery 3</th><td><a href=https://jquery.com/>jquery.com</a></td><td><a href=https://jquery.org/license>MIT License</a></td></tr><tr><th>Font Awesome 6</th><td><a href=https://fontawesome.com/>fontawesome.com</a></td><td><a href=https://fontawesome.com/license/>Font Awesome Pro License</a></td></tr><tr><th>Get S*** Done Toolkit</th><td><a href=https://www.creative-tim.com/product/get-shit-done-kit>creative-tim.com</a></td><td><a href=https://github.com/timcreative/freebies/blob/master/LICENSE.md>MIT License</a></td></tr><tr><th>FitText</th><td><a href=http://fittextjs.com/>fittextjs.com</a></td><td><a href=http://www.wtfpl.net/>WTFPL License</a></td></tr><tr><th>jQuery Mask Plugin</th><td><a href=https://igorescobar.github.io/jQuery-Mask-Plugin/>igorescobar.github.io</a></td><td><a href=https://github.com/igorescobar/jQuery-Mask-Plugin/blob/master/LICENSE>MIT License</a></td></tr><tr><th>PostCSS</th><td><a href=https://postcss.org/>postcss.com</a></td><td><a href=https://github.com/postcss/postcss/blob/main/LICENSE>MIT License</a></td></tr><tr><th>PurgeCSS</th><td><a href=https://purgecss.com/>purgecss.com</a></td><td><a href=https://github.com/FullHuman/purgecss/blob/main/LICENSE>MIT License</a></td></tr></table></div><div class="tab-pane fade p-3" id=privacy role=tabpanel><p>I take privacy very seriously. That said, I do need
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<!DOCTYPE html>
<body>
<h1>MillironX's Anatomy Quiz Generator</h1>
<h2>Quiz material weighting</h2>
<div id="weights"></div>
<hr />
<div>
<label for="num-questions">Number of questions </label>
<input id="num-questions" type="number" value="15" />
</div>
<hr />
<button id="generator">Generate!</button>
<hr />
<h2>Quiz</h2>
<ul id="quiz-terms"></ul>
<script>
const BoldTerms = {
bones: {
scapula: {
asymmetric: true,
features: {
"glenoid cavity": {
articulation: "head of humerus",
},
spine: {},
acromion: {
attachment: "deltoideus",
},
"supraspinous fossa": {},
"infraspinous fossa": {},
"serrated face": {
insertion: "serratus ventralis",
},
"subscapular fossa": {
attachment: "subscapularis",
},
"cranial border": {},
"scapular notch": {},
"cranial angle": {},
"dorsal border": {},
"caudal angle": {
attachment: "rhomboideus",
},
"caudal border": {
attachment: "teres major",
},
"infraglenoid tubercle": {
attachment: "teres minor and long head of the triceps",
},
"ventral angle": {},
neck: {},
"supraglenoid tubercle": {},
"coracoid process": {
attachment: "coracobrachialis",
},
},
},
humerus: {
asymmetric: true,
features: {
head: {
articulation: "glenoid cavity",
},
"intertubercular groove": {
originates: "biceps brachii",
},
"greater tubercle": {
insertion: "infraspinatus",
},
neck: {},
"cranial surface": {
attachment: "brachiocephalicus",
},
"crest of the greater tubercle": {
insertion: "pectorals and cleidobrachialis",
},
"lateral surface": {},
"deltoid tuberosity": {
insertion: "deltoideus",
},
"tricipital line": {
attachment: "lateral head of triceps",
},
"tuberosity of the teres minor": {},
"brachialis groove": {},
"lateral supracondylar crest": {
attachment: "extensor carpi radialis and anconeus",
},
"caudal surface": {},
"crest of the lesser tubercle": {},
"medial surface": {},
"teres major tuberosity": {
insertion: "teres major and latissimus dorsi",
},
"humeral condyle": {},
trochlea: {
articulation: "radius and ulna",
},
capitulum: { articulation: "head of the radius" },
"lateral epicondyle": {
originates:
"common digital extensor, lateral digital extensor, ulnaris lateralis, supinator",
attachment: "lateral collateral ligament",
},
"medial epicondyle": {
originates:
"flexor carpi radialis, flexor carpi ulnaris, pronator teres, superficial and deep digital flexor",
attachment: "medial collateral ligament",
},
"olecranon fossa": { articulation: "anconeal process of ulna" },
"radial fossa": {},
"supratrochlear foramen": {},
},
},
radius: {
asymmetric: true,
features: {
head: {},
"fovea capitis": {
articulation: "capitulum of humerus",
},
"articular circumference": {
articulation: "radial notch of ulna",
},
"radial tuberosity": {
insertion: "biceps brachii and brachialis",
},
body: {},
trochlea: {},
"ulnar notch": { articulation: "ulna" },
"styloid process": { attachment: "medial collateral ligament" },
},
ulna: {
asymmetric: true,
features: {
"trochlear notch": {
articulation: "trochlea of humerus",
},
"radial notch": {
articulation: "articular circumference of radius",
},
olecranon: {},
"olecranon tuber": {},
"anconeal process": {},
"medial coronoid process": {},
"lateral coronoid process": {},
body: {},
"ulnar tuberosity": {},
"interosseous border": {},
"styloid process": {},
},
"intermedioradial carpal": {},
"ulnar carpal": {},
"accessory carpal": {},
"proximal phalanx": {},
"middle phalanx": {
features: {
"ungual crest": {},
"ungual process": {},
"flexor tubercle": {},
},
},
"distal phalanx": {},
"carpal bones": {
features: {
I: {},
II: {},
III: {},
IV: {},
V: {},
},
},
"metacarpal bones": {
features: {
base: {},
body: {},
head: {},
},
},
},
},
"os coxae": {},
ilium: {
features: {
wing: {},
body: {},
"iliac crest": {},
"tuber coxae": {},
"lateral area for the rectus femoris": {},
"cranial dorsal iliac spine": {},
"caudal dorsal iliac spine": {},
"tuber sacrale": {},
"greater ischiatic notch": {},
"gluteal surface": {},
"sacropelvic surface": {},
"auricular surface": {},
"arcuate line": {},
},
},
ischium: {
features: {
"ischiatic tuberosity": {},
body: {},
"ischiatic spine": {},
"lesser ischiatic notch": {},
ramus: {},
"ischiatic table": {},
"ischiatic arch": {},
},
},
pubis: {
features: {
body: {},
"cranial ramus": {},
"caudal ramus": {},
"obturator sulcus": {},
"iliopubic eminence": {},
"pubic tubercle": {},
pecten: {},
acetabulum: {},
"acetabular notch": {},
"acetabular fossa": {},
"obturator foramen": {},
},
},
femur: {
asymmetric: true,
features: {
head: {},
"fovea capitis femoris": {},
neck: {},
"greater trochanter": {},
"trochanteric fossa": {},
"lesser trochanter": {},
"intertrochanteric crest": {},
"third trochanter": {},
body: {},
"medial lip": {},
"lateral lip": {},
trochlea: {},
"medial condyle": {},
"lateral condyle": {},
"intercondylar fossa": {},
"medial supracondylar tuberosity": {},
"lateral supracondylar tuberosity": {},
"popliteal surface": {},
"medial epicondyle": {},
"lateral epicondyle": {},
"extensor fossa": {},
},
},
tibia: {
asymmetric: true,
features: {
"medial condyle": {},
"lateral condyle": {},
"intercondylar eminence": {},
"cranial intercondylar area": {},
"caudal intercondylar area": {},
"popliteal notch": {},
"tibial tuberosity": {},
"cranial border": {},
"extensor groove": {},
body: {},
"tibial cochlea": {},
"medial malleolus": {},
},
},
fibula: {
features: {
head: {},
body: {},
"lateral malleolus": {},
},
},
calcaneus: {
features: {
"tuber calcanei": {},
"sustentaculum tali": {},
},
},
talus: {
features: {
trochlea: {},
},
},
"tarsal bones": {
I: {},
II: {},
III: {},
IV: {},
},
"central tarsal": {},
"metatarsal bones": {},
},
muscles: {
"cutaneous trunci": {},
"preputial muscle": {},
"superficial pectoral": {
features: {
"descending pectoral": {
origin: "cranial sternebrae",
insertion: "greater tubercle of humerus",
action: "adduct forelimb",
},
"transverse pectoral": {
origin: "cranial sternebrae",
insertion: "greater tubercle of humerus",
action: "adduct forelimb",
},
},
},
"deep pectoral": {
origin: "ventral sternum",
insertion: "fleshy",
action: "flex and extend shoulder joint",
},
brachiocephalicus: {
features: {
cleidobrachialis: {
origin: "clavicle",
insertion: "cranial border of humerus",
action: "extend shoulder joint",
},
cleidocephalicus: {
origin: "clavicle",
insertion: "occipital bone",
action: "extend shoulder joint",
},
},
},
sternocephalicus: {
features: {
"mastoid part": {
origin: "first sternebra",
insertion: "mastoid part of temporal bone",
action: "draw head and neck to the side",
},
"occipital part": {
origin: "first sternebra",
insertion: "nuchal crest of occipital bone",
action: "draw head and neck to the side",
},
},
},
sternohyoideus: {
origin: "first sternebra and first costal cartilage",
insertion: "basihyoid bone",
action: "pull the tongue and larynx caudally",
},
sternothyroideus: {
origin: "first costal cartilage",
insertion: "caudolateral surface of thyroid cartilage",
action: "pull the tongue and larynx caudally",
},
omotransversarius: {
attachment:
"distal end of spine of the scapula and the transverse process of the atlas",
action: "advance the limb or flex the neck laterally",
},
trapezius: {
features: {
"cervical part": {
origin: "supraspinous ligament",
insertion: "spine of scapula",
action: "abduction of forelimb",
},
"thoracic part": {
origin: "supraspinous ligament",
insertion: "spine of scapula",
action: "abduction of forelimb",
},
},
},
rhomboideus: {
features: {
"rhomboideus capitis": {
origin: "nuchal crest of occipital bone",
insertion: "dorsal border of scapula",
action: "elevate the forelimb",
},
"rhomboideus cervicis": {
origin: "median fibrous raphe of neck",
insertion: "dorsal border of scapula",
action: "elevate the forelimb",
},
"rhomboideus thoracis": {
origin: "spinous process of first seven thoracic vertebrae",
insertion: "dorsal border of scapula",
action: "elevate the forelimb",
},
},
},
"latissimus dorsi": {
origin: "thoracolumbar fascia",
insertion: "teres major tuberosity",
action: "flexion of shoulder joint",
},
"serratus ventralis": {
origin: "transverse processes of cervical vertebrae and ribs",
insertion: "serrated face of the scapula",
action: "to support the trunk",
},
deltoideus: {
features: {
"scapular part": {
origin: "spine of the scapula",
insertion: "deltoid tuberosity",
action: "flexion of shoulder joint",
},
"acromial part": {
origin: "acromion of the scapula",
insertion: "deltoid tuberosity",
action: "flexion of shoulder joint",
},
},
},
infraspinatus: {
origin: "infraspinous fossa of scapula",
insertion: "greater tubercle of humerus",
action:
"to abduct the shoulder, flex or extend the shoulder joint, or to rotate the humerus laterally",
},
"teres minor": {
origin: "infraglenoid tubercle",
insertion: "teres minor tuberosity",
action: "flexion of shoulder",
},
supraspinatus: {
origin: "supraspinous fossa",
insertion: "greater tubercle of humerus",
action: "extension of shoulder joint",
},
subscapularis: {
origin: "subscapular fossa",
insertion: "lesser tubercle of humerus",
action: "adduction and extension of shoulder joint",
},
"teres major": {
origin: "caudal angle of scapula",
insertion: "teres major tuberosity",
action: "flexion of shoulder joint",
},
coracobrachialis: {
origin: "coracoid process",
insertion: "lesser tubercle of humerus",
action: "adduction and extension of shoulder joint",
},
"tensor fasciae antebrachii": {
origin: "lateral fascia of latissimus dorsi",
insertion: "olecranon",
action: "extension of elbow joint",
},
"triceps brachii": {
features: {
"long head": {
origin: "caudal border of scapula",
insertion: "olecranon tuber",
action: "extension of elbow joint",
},
"lateral head": {
origin: "tricipital line of humerus",
insertion: "olecranon tuber",
action: "extension of elbow joint",
},
"accessory head": {
origin: "neck of humerus",
insertion: "olecranon tuber",
action: "extension of elbow joint",
},
"medial head": {
origin: "lesser tubercle of humerus",
insertion: "olecranon",
action: "extension of elbow joint",
},
},
},
anconeus: {
origin:
"lateral supracondylar crest, lateral and medial epicondyles of humerus",
insertion: "olecranon",
action: "extension of elbow joint",
},
"biceps brachii": {
origin: "supraglenoid tubercle",
insertion: "ulnar and radial tuberosities",
action: "flexion of elbow joint and extension of shoulder joint",
},
brachialis: {
origin: "lateral surface of humerus",
insertion: "ulnar and radial tuberosities",
action: "flexion of elbow joint",
},
"extensor carpi radialis": {
origin: "lateral supracondylar crest",
insertion: "base of metacarpals II and III",
action: "extension of carpal joints",
},
"common digital extensor": {
origin: "lateral epicondyle of humerus",
insertion: "distal phalanges II, III, IV, and V",
action: "extension of phalanges",
},
"lateral digital extensor": {
origin: "lateral epicondyle of humerus",
insertion: "proximal phalanges III, IV, and V",
action: "extension of carpal joints",
},
"ulnaris lateralis": {
origin: "lateral epicondyle of humerus",
insertion: "proximal metacarpal V and accessory carpal bone",
action: "flexion of carpal joints",
},
supinator: {
origin: "lateral epicondyle of humerus",
insertion: "cranial surface of radius",
action: "supinate forelimb",
},
"abductor digiti longus I": {
origin: "lateral border of ulna",
insertion: "proximal metacarpal I",
action: "abduction of digit I",
},
"pronator teres": {
origin: "medial epicondyle of humerus",
insertion: "medial border of radius",
action: "pronate forelimb",
},
"flexor carpi radialis": {
origin: "medial epicondyle of humerus",
insertion: "base of metacarpals II and III",
action: "flexion of carpal joints",
},
"superficial digital flexor": {
origin: "medial epicondyle of humerus",
insertion: "base of middle phalanges II, II, IV, and V",
action: "flexion of carpal joints",
},
"flexor carpi ulnaris": {
features: {
"ulnar head": {
origin: "caudal border of olecranon",
insertion: "accessory carpal bone",
action: "flexion of carpus",
},
"humeral head": {
origin: "medial epicondyle of humerus",
insertion: "accessory carpal bone",
action: "flexion of carpus",
},
},
},
"deep digital flexor": {
features: {
"humeral head": {
origin: "medial epicondyle of humerus",
insertion: "distal phalanges",
action: "flexion of carpal and metacarpophalangeal joints",
},
"radial head": {
origin: "medial border of radius",
insertion: "distal phalanges",
action: "flexion of carpal and metacarpophalangeal joints",
},
"ulnar head": {
origin: "caudal border of ulna",
insertion: "distal phalanges",
action: "flexion of carpal and metacarpophalangeal joints",
},
},
},
"pronator quadratus": {
attachment: "surface of radius and ulna",
action: "pronation of paw",
},
"biceps femoris": {
origin: "ischiatic tuberosity",
insertion: "tuber calcanei",
action: "extension of hip, stifle and tarsal joints",
},
semitendinosus: {
origin: "ischiatic tuberosity",
insertion: "tuber calcanei",
action:
"extension of the hip joint and tarsal joints and flexion of the stifle joint",
},
semimembranosus: {
origin: "ischiatic tuberosity",
insertion: "medial condyle of tibia",
action: "extension of hip joint",
},
sartorius: {
features: {
"cranial part": {
origin: "crest of ilium",
insertion: "patella",
action: "extension of stifle joint",
},
"caudal part": {
origin: "cranial ventral iliac spine",
insertion: "cranial border or tibia",
action: "flexion of stifle joint",
},
},
},
gracilis: {
origin: "pelvic symphysis",
insertion: "tuber calcanei",
action:
"adduction of hindlimb, flexion of stifle joint, and extension of hip and tarsal joints",
},
pectineus: {
origin: "iliopubic eminence",
insertion: "medial lip of femur",
action: "adduction of hindlimb",
},
adductor: {
features: {
"adductor magnus et brevis": {
origin: "ischiatic arch",
insertion: "lateral lip of femur",
action: "adduction of hindlimb",
},
"adductor longus": {
origin: "ischiatic arch",
insertion: "lateral lip of femur",
action: "adduction of hindlimb",
},
},
},
"tensor fasciae latae": {
origin: "tuber coxae",
insertion: "fasciae latae",
action: "flexion of hip joint, extension of stifle joint",
},
"superficial gluteal": {
origin: "sacrum",
insertion: "third trochanter",
action: "extension of hip joint",
},
"middle gluteal": {
origin: "gluteal surface of ilium",
insertion: "greater trochanter",
action: "extension of hip joint",
},
"deep gluteal": {
origin: "body of ilium",
insertion: "greater trochanter",
action: "extension of hip joint",
},
"articularis coxae": {},
"internal obturator": {
origin: "symphysis pelvis",
insertion: "trochanteric fossa",
action: "lateral rotation of pelvic limb",
},
gemelli: {
origin: "lateral surface of ischium",
insertion: "trochanteric fossa",
action: "lateral rotation of pelvic limb",
},
"quadratus femoris": {
origin: "ventral surface of ischium",
insertion: "intertrochanteric crest",
action: "extension of hip joint",
},
"external obturator": {
origin: "ventral surface of pubis and ischium",
insertion: "trochanteric fossa",
action: "lateral rotation of pelvic limb",
},
"quadriceps femoris": {
features: {
"rectus femoris": {
origin: "ilium",
insertion: "tibial tuberosity",
action: "extension of stifle joint and flexion of hip joint",
},
"vastus lateralis": {
origin: "ilium",
insertion: "tibial tuberosity",
action: "extension of stifle joint",
},
"vastus intermedius": {
origin: "ilium",
insertion: "tibial tuberosity",
action: "extension of stifle joint",
},
"vastus medialis": {
origin: "ilium",
insertion: "tibial tuberosity",
action: "extension of stifle joint",
},
},
},
iliopsoas: {
features: {
"psoas major": {
origin: "lumbar vertebrae",
insertion: "lesser trochanter",
action: "flexion of hip joint",
},
iliacus: {
origin: "cranioventral ilium",
insertion: "lesser trochanter",
action: "flexion of hip joint",
},
},
},
"quadratus lumborum": {},
"cranial tibial": {
origin: "extensor groove",
insertion: "base of metatarsals I and II",
action: "flexion of tarsocrural joint",
},
"long digital extensor": {
origin: "extensor fossa",
insertion: "distal phalanges",
action: "extension of digital joints and flexion of tarsal joints",
},
"fibularis longus": {
origin: "lateral condyle of tibia",
insertion: "fourth tarsal and base of metatarsals",
action: "flexion of tarsal joints",
},
gastrocnemius: {
features: {
"lateral head": {
origin: "lateral supracondylar tuberosity of femur",
insertion: "tuber calcanei",
action: "extension of tarsal joints and flexion of stifle joint",
},
"medial head": {
origin: "medial supracondylar tuberosity of femur",
insertion: "tuber calcanei",
action: "extension of tarsal joints and flexion of stifle joint",
},
},
},
"superficial digital flexor": {
origin: "lateral supracondylar tuberosity",
insertion: "tuber calcanei and middle phalanges II, III, IV, and V",
action:
"flexion of digital joints, flexion of stifle joints, extension of tarsal joints",
},
"deep digital flexor (hindlimb)": {},
popliteus: {
origin: "lateral epicondyle of femur",
insertion: "caudal surface of tibia",
action: "medial rotation of hindlimb",
},
},
joints: {
humeral: {},
cubiti: {},
metacarpophalangeal: {},
"antebrachiocarpal joint": {},
"middle carpal joint": {},
"carpometacarpal joint": {},
"proximal interphalangeal joint": {},
"distal interphalangeal joint": {},
},
ligaments: {
"supraspinous ligament": {},
"nuchal ligament": {},
"palmar annular ligament": {},
"annular digital ligament": {},
"medial glenohumeral ligament": {},
"lateral glenohumeral ligament": {},
"lateral collateral ligament": {},
"medial collateral ligament": {},
"interosseous ligament": {},
"palmar carpal ligament": {},
"symphysial tendon": {},
"common calcanean tendon": {},
},
other: {
"superficial cervical lymph node": {},
"carotid sheath": {},
"thoracic mammae": {
features: {
"cranial thoracic mammae": {},
"caudal thoracic mammae": {},
},
},
"abdominal mammae": {
features: {
"cranial abdominal mammae": {},
"caudal abdominal mammae": {},
},
},
"inguinal mammae": {},
"costal arch": {},
"subtendious synovial bursa": {},
"transverse humeral retinaculum": {},
"intertubercular bursa": {},
"extensor retinaculum": {},
"flexor retinaculum": {},
"flexor manica": {},
"digital synovial sheath": {},
"transverse humeral retinaculum": {},
"popliteal lymph node": {},
"femoral triangle": {},
"crural extensor retinaculum": {},
"tarsal extensor retinaculum": {},
},
};
function structure_question(structure, props) {
let quiz_list = [];
quiz_list.push(`id: ${structure}`);
let questions = [];
if ("features" in props) {
for (feature in props["features"]) {
questions = feature_question(
`${feature} of ${structure}`,
props["features"][feature]
);
}
} else {
questions = feature_question(structure, props);
}
for (const question of questions) {
quiz_list.push(question);
}
return quiz_list;
}
function feature_question(feature, props) {
let quiz_list = [];
quiz_list.push(`id: ${feature}`);
for (const prop in props) {
if (prop != "asymmetric") {
quiz_list.push(property_question(feature, prop, props[prop]));
}
}
return quiz_list;
}
function property_question(feature, prop_name, prop_content) {
return `${prop_name}: ${feature} (${prop_content})`;
}
const weights_spinner_div = document.getElementById("weights");
for (structure_type in BoldTerms) {
const form_div = document.createElement("div");
const weight_spinner = document.createElement("input");
weight_spinner.setAttribute("id", `${structure_type}-weight`);
weight_spinner.setAttribute("type", "number");
weight_spinner.setAttribute("value", "10");
const weight_spinner_label = document.createElement("label");
weight_spinner_label.setAttribute("for", `${structure_type}-weight`);
weight_spinner_label.textContent = `${structure_type} `;
form_div.appendChild(weight_spinner_label);
form_div.appendChild(weight_spinner);
weights_spinner_div.append(form_div);
}
// Shamelessly stolen from
// https://github.com/trekhleb/javascript-algorithms/blob/master/src/algorithms/statistics/weighted-random/weightedRandom.js
function weighted_random(items, weights) {
const cumulativeWeights = [];
for (let i = 0; i < weights.length; i += 1) {
cumulativeWeights[i] = weights[i] + (cumulativeWeights[i - 1] || 0);
}
const maxCumulativeWeight =
cumulativeWeights[cumulativeWeights.length - 1];
const randomNumber = maxCumulativeWeight * Math.random();
for (let itemIndex = 0; itemIndex < items.length; itemIndex += 1) {
if (cumulativeWeights[itemIndex] >= randomNumber) {
return items[itemIndex];
}
}
}
// Shamelessly stolen from
// https://stackoverflow.com/a/15106541
function random_child(object) {
const keys = Object.keys(object);
const i = Math.floor(Math.random() * keys.length);
return {
key: keys[i],
object: object[keys[i]],
};
}
const terms_list = document.getElementById("quiz-terms");
function generate_quiz() {
terms_list.innerHTML = "";
let weights = [];
let types = [];
for (structure_type in BoldTerms) {
weights.push(
parseInt(document.getElementById(`${structure_type}-weight`).value)
);
types.push(structure_type);
}
const num_questions = document.getElementById("num-questions").value;
for (let i = 0; i <= num_questions; i += 1) {
// Pick the random category
const structure_type = weighted_random(types, weights);
// Pick a random structure from that category
const rand_structure = random_child(BoldTerms[structure_type]);
// Get the list of questions for that structure
const questions = structure_question(
rand_structure.key,
rand_structure.object
);
// Get a random question from that list
const rand_question =
questions[Math.floor(Math.random() * questions.length)];
// Add that structure to the list
let term_item = document.createElement("li");
term_item.innerHTML = rand_question;
terms_list.appendChild(term_item);
}
}
document
.getElementById("generator")
.addEventListener("click", generate_quiz);
generate_quiz();
</script>
</body>

49
categories/index.html
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Categories on MillironX</title><link>https://millironx.com/categories/</link><description>Recent content in Categories on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><atom:link href="https://millironx.com/categories/index.xml" rel="self" type="application/rss+xml"/></channel></rss>
<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Categories on MillironX</title><link>https://millironx.com/categories/</link><description>Recent content in Categories on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Mon, 23 Oct 2023 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/categories/index.xml" rel="self" type="application/rss+xml"/><item><title>paper</title><link>https://millironx.com/categories/paper/</link><pubDate>Mon, 23 Oct 2023 00:00:00 +0000</pubDate><guid>https://millironx.com/categories/paper/</guid><description/></item><item><title>web</title><link>https://millironx.com/categories/web/</link><pubDate>Tue, 01 Mar 2022 00:00:00 +0000</pubDate><guid>https://millironx.com/categories/web/</guid><description/></item><item><title>thesis</title><link>https://millironx.com/categories/thesis/</link><pubDate>Fri, 07 Aug 2020 00:00:00 +0000</pubDate><guid>https://millironx.com/categories/thesis/</guid><description/></item><item><title>poster</title><link>https://millironx.com/categories/poster/</link><pubDate>Wed, 12 Jun 2019 00:00:00 +0000</pubDate><guid>https://millironx.com/categories/poster/</guid><description/></item><item><title>presentation</title><link>https://millironx.com/categories/presentation/</link><pubDate>Wed, 01 Aug 2018 00:00:00 +0000</pubDate><guid>https://millironx.com/categories/presentation/</guid><description/></item><item><title>video</title><link>https://millironx.com/categories/video/</link><pubDate>Thu, 16 Feb 2017 00:00:00 +0000</pubDate><guid>https://millironx.com/categories/video/</guid><description/></item></channel></rss>

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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>paper</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1101/2023.10.20.563221><h3 class=card-title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</h3></a><div>23 Oct 2023</div><a href=/people/sofia-stamouli/ class="icon-link card-link"><i class="fad fa-user"></i> Sofia Stamouli</a>
<a href=/people/moritz-e.-beber/ class="icon-link card-link"><i class="fad fa-user"></i> Moritz E. Beber</a>
<a href=/people/tanja-normark/ class="icon-link card-link"><i class="fad fa-user"></i> Tanja Normark</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/lili-andersson-li/ class="icon-link card-link"><i class="fad fa-user"></i> Lili Andersson-Li</a>
<a href=/people/maxime-borry/ class="icon-link card-link"><i class="fad fa-user"></i> Maxime Borry</a>
<a href=/people/mahwash-jamy/ class="icon-link card-link"><i class="fad fa-user"></i> Mahwash Jamy</a>
<a href=/people/nf-core-community/ class="icon-link card-link"><i class="fad fa-user"></i> nf-core community</a>
<a href=/people/james-a.-fellows-yate/ class="icon-link card-link"><i class="fad fa-user"></i> James A. Fellows Yate</a><p class=card-text>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.
<strong><small><a href=https://doi.org/10.1101/2023.10.20.563221>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/genomics/ class="icon-link card-link"><i class="fad fa-tag"></i> genomics</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1021/acsestengg.2c00107><h3 class=card-title>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</h3></a><div>02 Sep 2022</div><a href=/people/carson-j.-silsby/ class="icon-link card-link"><i class="fad fa-user"></i> Carson J. Silsby</a>
<a href=/people/jonathan-r.-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan R. Counts</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured.
<strong><small><a href=https://doi.org/10.1021/acsestengg.2c00107>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/diffusion/ class="icon-link card-link"><i class="fad fa-tag"></i> diffusion</a>
<a href=/tags/hydrogels/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogels</a>
<a href=/tags/ionic-strength/ class="icon-link card-link"><i class="fad fa-tag"></i> ionic strength</a>
<a href=/tags/polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> polymers</a>
<a href=/tags/transport-properties/ class="icon-link card-link"><i class="fad fa-tag"></i> transport properties</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1016/j.vetmic.2022.109447><h3 class=card-title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</h3></a><div>27 Apr 2022</div><a href=/people/tyler-doerksen/ class="icon-link card-link"><i class="fad fa-user"></i> Tyler Doerksen</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/andrea-lu/ class="icon-link card-link"><i class="fad fa-user"></i> Andrea Lu</a>
<a href=/people/lance-noll/ class="icon-link card-link"><i class="fad fa-user"></i> Lance Noll</a>
<a href=/people/jianfa-bai/ class="icon-link card-link"><i class="fad fa-user"></i> Jianfa Bai</a>
<a href=/people/jamie-henningson/ class="icon-link card-link"><i class="fad fa-user"></i> Jamie Henningson</a>
<a href=/people/rachel-palinski/ class="icon-link card-link"><i class="fad fa-user"></i> Rachel Palinski</a><p class=card-text>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.
<strong><small><a href=https://doi.org/10.1016/j.vetmic.2022.109447>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/porcine-rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine rotavirus</a>
<a href=/tags/porcine-enteric-disease/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine enteric disease</a>
<a href=/tags/virome/ class="icon-link card-link"><i class="fad fa-tag"></i> virome</a>
<a href=/tags/rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> rotavirus</a></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>paper on MillironX</title><link>https://millironx.com/categories/paper/</link><description>Recent content in paper on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Mon, 23 Oct 2023 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/categories/paper/index.xml" rel="self" type="application/rss+xml"/><item><title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</title><link>https://millironx.com/academia/taxprofiler/</link><pubDate>Mon, 23 Oct 2023 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/taxprofiler/</guid><description>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.</description></item><item><title>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</title><link>https://millironx.com/academia/hydronium-pva/</link><pubDate>Fri, 02 Sep 2022 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/hydronium-pva/</guid><description>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured.</description></item><item><title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</title><link>https://millironx.com/academia/rotavirus-virome/</link><pubDate>Wed, 27 Apr 2022 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/rotavirus-virome/</guid><description>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.</description></item></channel></rss>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>poster - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>poster</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf><h3 class=card-title>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</h3></a><div>12 Jun 2019</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/kathy-j.-austin/ class="icon-link card-link"><i class="fad fa-user"></i> Kathy J. Austin</a>
<a href=/people/kristi-m.-cammack/ class="icon-link card-link"><i class="fad fa-user"></i> Kristi M. Cammack</a>
<a href=/people/hannah-c.-cunningham-hollinger/ class="icon-link card-link"><i class="fad fa-user"></i> Hannah C. Cunningham-Hollinger</a><p class=card-text>Early colonization of the rumen microbiome is critical to host health and long term performance. Factors that influence early colonization include maternal factors such as gestational nutrition and mode of delivery. Therefore, we hypothesized that late gestational nutrition and mode of delivery would influence the calf rumen microbiome. Our objectives were to determine if nutrient restriction during late gestation alters the calf rumen microbiome and determine if ruminal microbiome composition differs in calves born vaginally versus caesarean.
<strong><small><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/gestation/ class="icon-link card-link"><i class="fad fa-tag"></i> gestation</a>
<a href=/tags/metagenomics/ class="icon-link card-link"><i class="fad fa-tag"></i> metagenomics</a>
<a href=/tags/microbiome/ class="icon-link card-link"><i class="fad fa-tag"></i> microbiome</a>
<a href=/tags/rumen/ class="icon-link card-link"><i class="fad fa-tag"></i> rumen</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf><h3 class=card-title>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</h3></a><div>29 Oct 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/samuel-r.-wolfe/ class="icon-link card-link"><i class="fad fa-user"></i> Samuel R. Wolfe</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique challenges for cleanup because of its water solubility, density, and volatility. Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE results in acid generation that inhibits remediating microorganisms. Calcium alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting remediating microbes, however diffusion of TCE or its byproducts through these polymers is unknown. To measure the effective diffusion coefficient of TCE and byproducts through hydrogel membranes, we used a modified diaphragm cell.
<strong><small><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/bioremediation/ class="icon-link card-link"><i class="fad fa-tag"></i> bioremediation</a>
<a href=/tags/polyoxometalate/ class="icon-link card-link"><i class="fad fa-tag"></i> polyoxometalate</a>
<a href=/tags/hydrogel-polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogel polymers</a>
<a href=/tags/proton-transport/ class="icon-link card-link"><i class="fad fa-tag"></i> proton transport</a>
<a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/pva-inbre/><h3 class=card-title>Measuring diffusion of protons in polyvinyalginate</h3></a><div>31 Jul 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents unique challenges for cleanup because of its density and volatility. Use of microorganisms may be a promising remediation method, however metabolism of TCE results in acid buildup, which consequently impedes the ability of microorganisms to perform this remediation. Polyvinylalginate (PVA) shows promise as a useful shield for microorganisms carrying out bioremediation of TCE by surrounding them in a protective biofilm-like layer, however, key information is missing which relates diffusion of TCE or its metabolic products through PVA.
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>poster on MillironX</title><link>https://millironx.com/categories/poster/</link><description>Recent content in poster on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Wed, 12 Jun 2019 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/categories/poster/index.xml" rel="self" type="application/rss+xml"/><item><title>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</title><link>https://millironx.com/academia/metagenomics/</link><pubDate>Wed, 12 Jun 2019 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/metagenomics/</guid><description>Early colonization of the rumen microbiome is critical to host health and long term performance. Factors that influence early colonization include maternal factors such as gestational nutrition and mode of delivery. Therefore, we hypothesized that late gestational nutrition and mode of delivery would influence the calf rumen microbiome. Our objectives were to determine if nutrient restriction during late gestation alters the calf rumen microbiome and determine if ruminal microbiome composition differs in calves born vaginally versus caesarean.</description></item><item><title>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</title><link>https://millironx.com/academia/pva-aiche/</link><pubDate>Mon, 29 Oct 2018 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/pva-aiche/</guid><description>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique challenges for cleanup because of its water solubility, density, and volatility. Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE results in acid generation that inhibits remediating microorganisms. Calcium alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting remediating microbes, however diffusion of TCE or its byproducts through these polymers is unknown. To measure the effective diffusion coefficient of TCE and byproducts through hydrogel membranes, we used a modified diaphragm cell.</description></item><item><title>Measuring diffusion of protons in polyvinyalginate</title><link>https://millironx.com/academia/pva-inbre/</link><pubDate>Tue, 31 Jul 2018 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/pva-inbre/</guid><description>Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents unique challenges for cleanup because of its density and volatility. Use of microorganisms may be a promising remediation method, however metabolism of TCE results in acid buildup, which consequently impedes the ability of microorganisms to perform this remediation. Polyvinylalginate (PVA) shows promise as a useful shield for microorganisms carrying out bioremediation of TCE by surrounding them in a protective biofilm-like layer, however, key information is missing which relates diffusion of TCE or its metabolic products through PVA.</description></item></channel></rss>

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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>presentation on MillironX</title><link>https://millironx.com/categories/presentation/</link><description>Recent content in presentation on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Wed, 01 Aug 2018 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/categories/presentation/index.xml" rel="self" type="application/rss+xml"/><item><title>How to Build a Cow-Cud Fuel Cell</title><link>https://millironx.com/academia/how-to-build-a-cow-cud-fuel-cell/</link><pubDate>Wed, 01 Aug 2018 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/how-to-build-a-cow-cud-fuel-cell/</guid><description/></item></channel></rss>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>thesis - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>thesis</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/thesis/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Thesis><i class="fad fa-graduation-cap fa-fw"></i></a></div><div class=card-body><a href=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2><h3 class=card-title>Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers</h3></a><div>07 Aug 2020</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a><p class=card-text>Polyoxometalate clusters embedded into hydrogel biobeads may be able to solve the challenges posed by free proton generation during remediation of trichloroethylene by acting as buffers and reducing protons to hydrogen gas. In this thesis, the challenges posed by systems that contain both diffusion and reaction processes for protons are considered mathematically, and a computer simulation to was developed to prove the relationship between diaphragm cell lag period and reactive capabilities of membranes.
<strong><small><a href=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/bioremediation/ class="icon-link card-link"><i class="fad fa-tag"></i> bioremediation</a>
<a href=/tags/polyoxometalate/ class="icon-link card-link"><i class="fad fa-tag"></i> polyoxometalate</a>
<a href=/tags/hydrogel-polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogel polymers</a>
<a href=/tags/proton-transport/ class="icon-link card-link"><i class="fad fa-tag"></i> proton transport</a>
<a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/thesis/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Thesis><i class="fad fa-graduation-cap fa-fw"></i></a></div><div class=card-body><img class="img img-thumbnail float-start me-3 md-max-width-33" src=/academia/cheme-car/thumbnail_hua27ceb9f6c1a8b01057b70de792ffbc6_1566619_600x0_resize_q75_box.jpg alt="Thumbnail of thumbnail.jpg">
<a href=https://doi.org/10.15786/13700938.v1><h3 class=card-title>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal</h3></a><div>14 May 2019</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a><p class=card-text>The ChemE Car That Cud showcases Wyoming&rsquo;s dominant industries of agriculture and mining by utilizing rumen fluid from a cannulated beef cow to generate hydrogen to be used in a hydrogen fuel cell and radioactive cesium, a byproduct of uranium that is often obtained from Wyoming&rsquo;s mines, to time the car&rsquo;s stop. The concentration of cesium-137 source is measured using the radioactive decay of cesium shielded by aluminum. The painted aluminum chassis was obtained from a previous team at UW, and modified using plastic k&rsquo;nex toys to adapt to the current power source and stopping mechanism.
<strong><small><a href=https://doi.org/10.15786/13700938.v1>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a>
<a href=/tags/aiche/ class="icon-link card-link"><i class="fad fa-tag"></i> AIChE</a>
<a href=/tags/radiation/ class="icon-link card-link"><i class="fad fa-tag"></i> radiation</a>
<a href=/tags/rumen/ class="icon-link card-link"><i class="fad fa-tag"></i> rumen</a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>video - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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<a href=/videos/ag-olympics-reel/><h3 class=card-title>Farm Bureau Ag Olympics Reel</h3></a><div>16 Feb 2017</div><p class=card-text>The Albany County Farm Bureau Young Farmer&rsquo;s and Rancher&rsquo;s committee asked me to come and shoot a highlight reel of the Ag Olympics booth they ran at the Wyoming Football Wyoming Needs Agriculture Day. I gave away all rights to this one except for bragging rights.
<strong><small><a href=/videos/ag-olympics-reel/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/video/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Video><i class="fad fa-video fa-fw"></i></a></div><div class=card-body><img class="img img-thumbnail float-start me-3 md-max-width-33" src=/videos/if-you-come-out-to-the-fair/thumbnail_hu834e3603c34a0a256fdd826d65f58c0f_231848_600x0_resize_q75_box.jpg alt="Thumbnail of thumbnail.jpg">
<a href=/videos/if-you-come-out-to-the-fair/><h3 class=card-title>If You Come Out to the Fair</h3></a><div>13 Oct 2016</div><p class=card-text>My extension agent asked me to make a promotional video for our county fair. This is the only film of mine that has drawn an emotional response. I think I retired after this.
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<a href=/videos/in-the-hayfields/><h3 class=card-title>In The Hayfields</h3></a><div>05 Oct 2015</div><p class=card-text>I always get the comment that our implements are old whenever I show this video off. I just ignore the naysayers, though, and good thing, too, because a version of this video won a GoPro Award. Still waiting to see my footage on their channel, though.
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<a href=/videos/non-verum/><h3 class=card-title>Non. Verum: The Mystery Killer</h3></a><div>12 Jun 2015</div><p class=card-text>My first documentary mockumentary. This film won 2nd place at the 2016 National 4-H Film Festival, and I&rsquo;ve been told that it&rsquo;s more polished than the pieces done by the local TV stations. No one seems to think it&rsquo;s funny, though, so I&rsquo;m not sure how successful it was. Please do me a favor and google every term you don&rsquo;t understand while watching it, and perhaps you&rsquo;ll fare better.
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Thomas A. Christensen II is licensed under a
<a rel=license href=http://creativecommons.org/licenses/by/4.0/>Creative Commons Attribution 4.0 International License</a>.</p><p>All images, unless otherwise noted, are licensed under a
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License</a>, instead.</p><hr><p>This site is open source!<br><a class="btn btn-dark" href=https://code.millironx.com/millironx/millironx.github.io><i class="fax fa-gitea"></i>&emsp;Get the code! &#187;</a>
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and toolkits in building it. I dedicate this space to
acknowledging them all.</p><table class="table table-condensed table-responsive table-striped"><tr><th>Project name</th><th>URL</th><th>License</th></tr><tr><th>Hugo</th><td><a href=https://gohugo.io/>gohugo.io</a></td><td><a href=https://github.com/gohugoio/hugo/blob/master/LICENSE>Apache License v2</a></td></tr><tr><th>Node.js</th><td><a href=https://nodejs.org/>nodejs.org</a></td><td><a href=https://github.com/nodejs/node/blob/HEAD/LICENSE>MIT License</a></td></tr><tr><th>Bootstrap 5</th><td><a href=https://getbootstrap.com/>getbootstrap.com</a></td><td><a href=https://github.com/twbs/bootstrap/blob/main/LICENSE>MIT License</a></td></tr><tr><th>Bootswatch Lux 5</th><td><a href=https://bootswatch.com/lux/>bootswatch.com</a></td><td><a href=https://github.com/thomaspark/bootswatch/blob/v5/LICENSE>MIT License</a></td></tr><tr><th>JQuery 3</th><td><a href=https://jquery.com/>jquery.com</a></td><td><a href=https://jquery.org/license>MIT License</a></td></tr><tr><th>Font Awesome 6</th><td><a href=https://fontawesome.com/>fontawesome.com</a></td><td><a href=https://fontawesome.com/license/>Font Awesome Pro License</a></td></tr><tr><th>Get S*** Done Toolkit</th><td><a href=https://www.creative-tim.com/product/get-shit-done-kit>creative-tim.com</a></td><td><a href=https://github.com/timcreative/freebies/blob/master/LICENSE.md>MIT License</a></td></tr><tr><th>FitText</th><td><a href=http://fittextjs.com/>fittextjs.com</a></td><td><a href=http://www.wtfpl.net/>WTFPL License</a></td></tr><tr><th>jQuery Mask Plugin</th><td><a href=https://igorescobar.github.io/jQuery-Mask-Plugin/>igorescobar.github.io</a></td><td><a href=https://github.com/igorescobar/jQuery-Mask-Plugin/blob/master/LICENSE>MIT License</a></td></tr><tr><th>PostCSS</th><td><a href=https://postcss.org/>postcss.com</a></td><td><a href=https://github.com/postcss/postcss/blob/main/LICENSE>MIT License</a></td></tr><tr><th>PurgeCSS</th><td><a href=https://purgecss.com/>purgecss.com</a></td><td><a href=https://github.com/FullHuman/purgecss/blob/main/LICENSE>MIT License</a></td></tr></table></div><div class="tab-pane fade p-3" id=privacy role=tabpanel><p>I take privacy very seriously. That said, I do need
<i>some</i> info on how many people visit. As a compromise, this
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privacy-friendly (as much as possible) web analytics library.</p><p>You may view all analytics gathered at
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>video on MillironX</title><link>https://millironx.com/categories/video/</link><description>Recent content in video on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Thu, 16 Feb 2017 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/categories/video/index.xml" rel="self" type="application/rss+xml"/><item><title>Farm Bureau Ag Olympics Reel</title><link>https://millironx.com/videos/ag-olympics-reel/</link><pubDate>Thu, 16 Feb 2017 00:00:00 +0000</pubDate><guid>https://millironx.com/videos/ag-olympics-reel/</guid><description>The Albany County Farm Bureau Young Farmer&amp;rsquo;s and Rancher&amp;rsquo;s committee asked me to come and shoot a highlight reel of the Ag Olympics booth they ran at the Wyoming Football Wyoming Needs Agriculture Day. I gave away all rights to this one except for bragging rights.</description></item><item><title>If You Come Out to the Fair</title><link>https://millironx.com/videos/if-you-come-out-to-the-fair/</link><pubDate>Thu, 13 Oct 2016 00:00:00 +0000</pubDate><guid>https://millironx.com/videos/if-you-come-out-to-the-fair/</guid><description>My extension agent asked me to make a promotional video for our county fair. This is the only film of mine that has drawn an emotional response. I think I retired after this.</description></item><item><title>In The Hayfields</title><link>https://millironx.com/videos/in-the-hayfields/</link><pubDate>Mon, 05 Oct 2015 00:00:00 +0000</pubDate><guid>https://millironx.com/videos/in-the-hayfields/</guid><description>I always get the comment that our implements are old whenever I show this video off. I just ignore the naysayers, though, and good thing, too, because a version of this video won a GoPro Award. Still waiting to see my footage on their channel, though.</description></item><item><title>Non. Verum: The Mystery Killer</title><link>https://millironx.com/videos/non-verum/</link><pubDate>Fri, 12 Jun 2015 00:00:00 +0000</pubDate><guid>https://millironx.com/videos/non-verum/</guid><description>My first documentary mockumentary. This film won 2nd place at the 2016 National 4-H Film Festival, and I&amp;rsquo;ve been told that it&amp;rsquo;s more polished than the pieces done by the local TV stations. No one seems to think it&amp;rsquo;s funny, though, so I&amp;rsquo;m not sure how successful it was. Please do me a favor and google every term you don&amp;rsquo;t understand while watching it, and perhaps you&amp;rsquo;ll fare better.</description></item></channel></rss>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>web - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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<a href=/websites/millironx/><h3 class=card-title>Milliron X</h3></a><div>01 Mar 2022</div><p class=card-text>Lo and behold: I made my own website!
<strong><small><a href=/websites/millironx/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/web/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Web><i class="fad fa-globe fa-fw"></i></a></div><div class=card-body><img class="img img-thumbnail float-start me-3 md-max-width-33" src=/websites/record-books/thumbnail_hubee456e49703e4842c3e3b7e624a57f4_430158_600x0_resize_box_3.png alt="Thumbnail of thumbnail.png">
<a href=/websites/record-books/><h3 class=card-title>Albany County 4-H Record Books</h3></a><div>10 Aug 2019</div><p class=card-text>I constructed this site to hold the record book helps of the rebellious Albany County, Wyoming. Due to the bureaucratic lag that it takes to update, it got updated just in time for Wyoming 4-H to ditch paper record books entirely. Oh, well.
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>web on MillironX</title><link>https://millironx.com/categories/web/</link><description>Recent content in web on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Tue, 01 Mar 2022 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/categories/web/index.xml" rel="self" type="application/rss+xml"/><item><title>Milliron X</title><link>https://millironx.com/websites/millironx/</link><pubDate>Tue, 01 Mar 2022 00:00:00 +0000</pubDate><guid>https://millironx.com/websites/millironx/</guid><description>Lo and behold: I made my own website!</description></item><item><title>Albany County 4-H Record Books</title><link>https://millironx.com/websites/record-books/</link><pubDate>Sat, 10 Aug 2019 00:00:00 +0000</pubDate><guid>https://millironx.com/websites/record-books/</guid><description>I constructed this site to hold the record book helps of the rebellious Albany County, Wyoming. Due to the bureaucratic lag that it takes to update, it got updated just in time for Wyoming 4-H to ditch paper record books entirely. Oh, well.</description></item></channel></rss>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Contact Me - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
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acknowledging them all.</p><table class="table table-condensed table-responsive table-striped"><tr><th>Project name</th><th>URL</th><th>License</th></tr><tr><th>Hugo</th><td><a href=https://gohugo.io/>gohugo.io</a></td><td><a href=https://github.com/gohugoio/hugo/blob/master/LICENSE>Apache License v2</a></td></tr><tr><th>Node.js</th><td><a href=https://nodejs.org/>nodejs.org</a></td><td><a href=https://github.com/nodejs/node/blob/HEAD/LICENSE>MIT License</a></td></tr><tr><th>Bootstrap 5</th><td><a href=https://getbootstrap.com/>getbootstrap.com</a></td><td><a href=https://github.com/twbs/bootstrap/blob/main/LICENSE>MIT License</a></td></tr><tr><th>Bootswatch Lux 5</th><td><a href=https://bootswatch.com/lux/>bootswatch.com</a></td><td><a href=https://github.com/thomaspark/bootswatch/blob/v5/LICENSE>MIT License</a></td></tr><tr><th>JQuery 3</th><td><a href=https://jquery.com/>jquery.com</a></td><td><a href=https://jquery.org/license>MIT License</a></td></tr><tr><th>Font Awesome 6</th><td><a href=https://fontawesome.com/>fontawesome.com</a></td><td><a href=https://fontawesome.com/license/>Font Awesome Pro License</a></td></tr><tr><th>Get S*** Done Toolkit</th><td><a href=https://www.creative-tim.com/product/get-shit-done-kit>creative-tim.com</a></td><td><a href=https://github.com/timcreative/freebies/blob/master/LICENSE.md>MIT License</a></td></tr><tr><th>FitText</th><td><a href=http://fittextjs.com/>fittextjs.com</a></td><td><a href=http://www.wtfpl.net/>WTFPL License</a></td></tr><tr><th>jQuery Mask Plugin</th><td><a href=https://igorescobar.github.io/jQuery-Mask-Plugin/>igorescobar.github.io</a></td><td><a href=https://github.com/igorescobar/jQuery-Mask-Plugin/blob/master/LICENSE>MIT License</a></td></tr><tr><th>PostCSS</th><td><a href=https://postcss.org/>postcss.com</a></td><td><a href=https://github.com/postcss/postcss/blob/main/LICENSE>MIT License</a></td></tr><tr><th>PurgeCSS</th><td><a href=https://purgecss.com/>purgecss.com</a></td><td><a href=https://github.com/FullHuman/purgecss/blob/main/LICENSE>MIT License</a></td></tr></table></div><div class="tab-pane fade p-3" id=privacy role=tabpanel><p>I take privacy very seriously. That said, I do need
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privacy-friendly (as much as possible) web analytics library.</p><p>You may view all analytics gathered at
<a href=https://millironx.goatcounter.com/>millironx.goatcounter.com</a>.</p><p>If you do not wish to participate in my site's analytics, you may
install a content-blocking extension into your browser and block
the domain
<code>gc.zgo.at</code>. I recommend either
<a href=https://github.com/gorhill/uBlock>uBlock Origin</a>
(instructions
<a href=https://github.com/gorhill/uBlock/wiki/Dashboard:-My-filters>here</a>) or <a href=https://noscript.net>NoScript</a> for this
purpose.</p></div><div class="tab-pane fade p-3" id=debug role=tabpanel><dl><dt>cardimage</dt><dd>venice-mailbox</dd><dt>date</dt><dd>2023-07-01 00:00:00 +0000 UTC</dd><dt>description</dt><dd>Contact form to get ahold of me</dd><dt>draft</dt><dd>false</dd><dt>fa-thumbnail</dt><dd>fad fa-file-signature</dd><dt>iscjklanguage</dt><dd>false</dd><dt>lastmod</dt><dd>2023-07-01 00:00:00 +0000 UTC</dd><dt>menu</dt><dd>map[main:map[name:Contact params:map[icon:fa-file-signature prefix:fad] weight:1]]</dd><dt>motto</dt><dd>Contact Me</dd><dt>publishdate</dt><dd>2023-07-01 00:00:00 +0000 UTC</dd><dt>title</dt><dd>Contact Me</dd></dl></div></div></div></div></div></div></body></html>

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<!DOCTYPE html>
<body>
<code id="dname"></code>
<script>
"use strict";
const left = [
"admiring",
"adoring",
"affectionate",
"agitated",
"amazing",
"awesome",
"beautiful",
"beloved",
"blissful",
"bold",
"brave",
"busy",
"caprine",
"charming",
"clever",
"cool",
"compassionate",
"competent",
"confident",
"dazzling",
"determined",
"distracted",
"dreamy",
"eager",
"ecstatic",
"elastic",
"elated",
"elegant",
"eloquent",
"epic",
"exciting",
"fervent",
"festive",
"flamboyant",
"focused",
"friendly",
"frosty",
"funny",
"gallant",
"gifted",
"goofy",
"gracious",
"great",
"happy",
"hardcore",
"heuristic",
"hircine",
"hopeful",
"hungry",
"infallible",
"inspiring",
"interesting",
"intelligent",
"jolly",
"jovial",
"keen",
"kind",
"laughing",
"lucid",
"magical",
"mystifying",
"modest",
"musing",
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"nice",
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"nostalgic",
"objective",
"optimistic",
"peaceful",
"practical",
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"quirky",
"quizzical",
"recursing",
"relaxed",
"reverent",
"ruminant",
"sad",
"serene",
"sharp",
"silly",
"sleepy",
"stoic",
"strange",
"sweet",
"tender",
"thirsty",
"trusting",
"unruffled",
"upbeat",
"vibrant",
"vigilant",
"vigorous",
"wizardly",
"wonderful",
"xenodochial",
"youthful",
"zealous",
"zen",
],
right = [
"albattani",
"allen",
"almeida",
"antonelli",
"agnesi",
"archimedes",
"ardinghelli",
"aryabhata",
"austin",
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"bell",
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"black",
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"booth",
"borg",
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"boyd",
"brahmagupta",
"brattain",
"brown",
"buck",
"burnell",
"cannon",
"carson",
"cartwright",
"carver",
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"chandrasekhar",
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"chatelet",
"chatterjee",
"chebyshev",
"cohen",
"chaum",
"clarke",
"colden",
"cori",
"cray",
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"curie",
"darwin",
"davinci",
"dewdney",
"dhawan",
"diffie",
"dijkstra",
"dirac",
"driscoll",
"dubinsky",
"edison",
"einstein",
"elbakyan",
"elgamal",
"elion",
"ellis",
"engelbart",
"euclid",
"euler",
"faraday",
"feistel",
"fermat",
"fermi",
"feynman",
"franklin",
"gagarin",
"galileo",
"galois",
"ganguly",
"gates",
"gauss",
"germain",
"goldberg",
"goldstine",
"goldwasser",
"golick",
"goodall",
"gould",
"greider",
"grothendieck",
"haibt",
"hamilton",
"haslett",
"hawking",
"hellman",
"heisenberg",
"henderson",
"hermann",
"herschel",
"hertz",
"heyrovsky",
"hodgkin",
"hofstadter",
"hoover",
"hopper",
"hugle",
"hungate",
"hypatia",
"ishizaka",
"jackson",
"jang",
"jemison",
"jennings",
"jepsen",
"joliot",
"jones",
"kalam",
"kaminsky",
"kapitsa",
"kare",
"karpinski",
"keldysh",
"keller",
"kepler",
"khayyam",
"khorana",
"kilby",
"kirch",
"knuth",
"kowalevski",
"lalande",
"lamarr",
"lamport",
"leakey",
"leavitt",
"lederberg",
"lehmann",
"levenspiel",
"lewin",
"lichterman",
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"lovelace",
"lumiere",
"lush",
"mahavira",
"margulis",
"matsumoto",
"maxwell",
"mayer",
"mccarthy",
"mcclintock",
"mclaren",
"mclean",
"mcnulty",
"mendel",
"mendeleev",
"meitner",
"meninsky",
"merkle",
"mestorf",
"mirzakhani",
"montalcini",
"moore",
"morse",
"murdock",
"moser",
"napier",
"nash",
"neumann",
"newton",
"nightingale",
"nobel",
"noether",
"northcutt",
"noyce",
"panini",
"pare",
"pascal",
"pasteur",
"payne",
"perlman",
"pike",
"poincare",
"poitras",
"proskuriakova",
"ptolemy",
"raman",
"ramanujan",
"ritchie",
"rhodes",
"robinson",
"roentgen",
"rosalind",
"rubin",
"saha",
"sammet",
"sanderson",
"satoshi",
"shamir",
"shannon",
"shaw",
"shirley",
"shockley",
"shtern",
"sinoussi",
"snyder",
"solomon",
"spence",
"stonebraker",
"sutherland",
"swanson",
"swartz",
"swirles",
"taussig",
"tereshkova",
"tesla",
"tharp",
"thiele",
"thompson",
"torvalds",
"tu",
"turing",
"varahamihira",
"vaughan",
"visvesvaraya",
"volhard",
"villani",
"wescoff",
"wilbur",
"wiles",
"williams",
"williamson",
"wilson",
"wing",
"wozniak",
"wright",
"wu",
"yalow",
"yonath",
"zhukovsky",
"ago",
"amir",
"ansell",
"bieron",
"bitincka",
"bondo",
"chung",
"easley",
"emmy",
"fritze",
"goozy",
"gilbert",
"heady",
"hoffman",
"jeebus",
"katz",
"krueger",
"litras",
"maislin",
"marko",
"quick",
"rochette",
"romito",
"shanaghy",
"sharp",
"smith",
"sobolewski",
"strong",
"suara",
"tankersley",
"vandoren",
"wilk",
"vandoren",
"wilkins",
"reeder",
"shannon",
"geary",
"walker",
"denver",
"medary",
"robinson",
"carney",
"crawford",
"green",
"harvey",
"osborn",
"anthony",
"john",
"glick",
"martin",
"humphrey",
"lewelling",
"morrill",
"leedy",
"stanley",
"bailey",
"hoch",
"stubbs",
"hodges",
"capper",
"allen",
"davis",
"paulen",
"reed",
"woodring",
"landon",
"huxman",
"ratner",
"schoeppel",
"carlson",
"hagaman",
"arn",
"hall",
"mccuish",
"docking",
"anderson",
"avery",
"docking",
"bennett",
"carlin",
"hayden",
"finney",
"graves",
"sebelius",
"parkinson",
"brownback",
"colyer",
"kelly",
"campbell",
"thayer",
"hoyt",
"hale",
"morgan",
"warren",
"baxter",
"moonlight",
"barber",
"osborne",
"richards",
"chatterton",
"brooks",
"carey",
"kendrick",
"houx",
"ross",
"lucas",
"emerson",
"clark",
"miller",
"smith",
"hunt",
"crane",
"barrett",
"simpson",
"hickey",
"gage",
"hansen",
"hathaway",
"herschler",
"sullivan",
"geringer",
"freudenthal",
"mead",
"gordon",
];
function generateName() {
return (
left[Math.floor(Math.random() * left.length)] +
"-" +
right[Math.floor(Math.random() * right.length)]
);
}
function generateNameWithNumber() {
return generateName() + "_" + (Math.floor(6 * Math.random()) + 1);
}
function generateNameWithDate() {
var e = new Date();
return (
e.setMinutes(e.getMinutes() - e.getTimezoneOffset()),
e.toISOString().slice(0, 10).replace(/-/g, "") + "_" + generateName()
);
}
document.getElementById("dname").innerHTML = generateNameWithDate();
</script>
</body>

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<!doctype html><html class=no-js lang=en><head><meta name=generator content="Hugo 0.108.0"><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Home - MillironX</title><link href="https://millironx.com/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=https://millironx.com/graphics/millironx.svg>
<img src=https://millironx.com/graphics/millironx.svg alt="Milliron X"></object>
<!doctype html><html class=no-js lang=en><head><meta name=generator content="Hugo 0.111.3"><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><meta name=description content="The homepage of Thomas A. Christensen II"><title>Home - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
<img src=/graphics/millironx.svg alt="Milliron X"></object>
&ensp;
<span class="font-small-caps font-serif">Milliron X</span></a>
<a href class=navbar-toggler data-bs-toggle=collapse data-bs-target=.sidebar><span class=navbar-toggler-icon></span></a><div class="collapse navbar-collapse sidebar"><ul class="flex-column navbar-nav w-100 justify-content-between"><li class=nav-item><a class="nav-link pl-0" href=/><i class="fad fa-home fa-fw"></i>
<span>Home</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/contact><i class="fad fa-file-signature fa-fw"></i>
<span>Contact</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/academia><i class="fad fa-university fa-fw"></i>
<span>Academia</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/ai><i class="fax fa-bull-sperm"></i>
<span>Artificial Insemination</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/videos><i class="fad fa-video fa-fw"></i>
<span>Videos</span></a></li><li class=nav-item><a class="nav-link pl-0" href=/websites><i class="fad fa-browser fa-fw"></i>
<span>Websites</span></a></li></ul></div></div></nav></aside><main class="col bg-faded py-3 gx-0"><div class=container><header class="d-none d-sm-none d-md-block text-center"><h1 class="font-serif font-small-caps"><object data=https://millironx.com/graphics/millironx.svg>
<img src=https://millironx.com/graphics/millironx.svg alt="Milliron X"></object>
<a href class=navbar-toggler data-bs-toggle=collapse data-bs-target=.sidebar><span class=navbar-toggler-icon></span></a><div class="collapse navbar-collapse sidebar"><ul class="flex-column navbar-nav w-100 justify-content-between"><li class=nav-item><a class="nav-link pl-0
active" href=/><i class="fad fa-home fa-fw"></i>
Home</a></li><li class=nav-item><a class="nav-link pl-0" href=/contact/><i class="fad fa-file-signature fa-fw"></i>
Contact</a></li><li class=nav-item><a class="nav-link pl-0" href=/academia/><i class="fad fa-university fa-fw"></i>
Academia</a></li><li class=nav-item><a class="nav-link pl-0" href=/ai/><i class="fax fa-bull-sperm fa-fw"></i>
Artificial Insemination</a></li><li class=nav-item><a class="nav-link pl-0" href=/videos/><i class="fad fa-video fa-fw"></i>
Videos</a></li><li class=nav-item><a class="nav-link pl-0" href=/websites/><i class="fad fa-browser fa-fw"></i>
Websites</a></li></ul></div></div></nav></aside><main class="col bg-faded py-3 gx-0"><div class=container><header class="d-none d-sm-none d-md-block text-center"><h1 class="font-serif font-small-caps"><object data=/graphics/millironx.svg>
<img src=/graphics/millironx.svg alt="Milliron X"></object>
&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto><small>My name is Thomas Christensen</small><br>I am Milliron X</h1></div><div class=img-src style=background-image:url(/images/charolette.jpg)></div><div class="img-src blur" style=background-image:url(/images/charolette_hu3443e2e07cb5f8d9bccf60b0005a6a7f_350799_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"><h2>What is a "Milliron X"?</h2><h3>It's a
<a href=https://en.wikipedia.org/wiki/Livestock_branding>cattle brand</a>,
of course! My cattle brand!</h3><p>The <dfn>milliron</dfn> is the bar with a bend in the middle. It does not
@ -30,14 +31,8 @@ ORCiD:
GitLab: <a href=https://gitlab.com/MillironX>@MillironX</a></li><li><i class="fab fa-fw fa-vimeo"></i>
Vimeo: <a href=https://vimeo.com/tchristensenii>Thomas Christensen II</a></li><li><i class="fab fa-fw fa-stack-overflow"></i>
Stack Exchange:
<a href=https://stackexchange.com/users/4863541/milliron-x>Milliron X</a></li><li><i class="fad fa-fw fa-user-astronaut"></i>
Odysee: <a href=https://odysee.com/@millironx:f>@millironx</a></li><li><span class="fa-layers fa-fw"><i class="fad fa-fw fa-comment"></i>
<span class=fa-layers-text data-fa-transform="shrink-6 up-2">g</span></span>
Gab: <a href=https://gab.com/millironx>@MillironX</a></li><li><i class="fab fa-fw fa-steam"></i>
Steam: <a href=https://steamcommunity.com/id/millironx>MillironX</a></li><li><span class="fa-layers fa-fw"><i class="fad fa-fw fa-w" data-fa-transform="shrink-2 down-2"></i>
<i class="fad fa-fw fa-ellipsis" data-fa-transform="grow-3 up-8"></i></span>
MeWe:
<a href=https://mewe.com/i/thomaschristensenii>Thomas Christensen II</a></li><li><i class="fab fa-fw fa-discord"></i>
<a href=https://stackexchange.com/users/4863541/milliron-x>Milliron X</a></li><li><i class="fab fa-fw fa-steam"></i>
Steam: <a href=https://steamcommunity.com/id/millironx>MillironX</a></li><li><i class="fab fa-fw fa-discord"></i>
Discord:
<a href=https://discord.com/users/484492414837587978>@MillironX</a></li></ul><div style=clear:both></div><div class="card border-warning m-3"><div class=card-body><p class=card-text>This list is intended to verify my identity on other sites. Please do
<em>not</em> use it as fodder to try and "follow" me on each of these
@ -45,7 +40,38 @@ platforms. I stand with RMS:</p><figure><blockquote class=blockquote><p>Facebook
Facebook, we lead them away from Facebook and then talk with them
elsewhere.</p></blockquote><figcaption class=blockquote-footer>Richard Stallman in
<cite><a href=https://stallman.org/facebook-presence.html>If you feel your organization needs a 'presence' in Facebook</a></cite></figcaption></figure><p class=card-text>I typically don't respond to inqueries made on these platforms. Please use
<a href=/contact>my contact form</a>, instead.</p></div></div></div></section><footer><div class="container-fluid footer-contents"><img src=https://millironx.com/images/brandedbull_hufc3ef4d1bebcd0898802af378829db58_10410_0x95_resize_box_3.png></div></footer></main></div></div><script src=https://millironx.com/js/fontawesome.min.6bc2dd5568cf8d07e2b66db77311aec6816cce50f3477ceac674c711fd4ec8eb.js></script>
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<a href=/contact>my contact form</a>, instead.</p></div></div></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button></div><div class=card-body><div class="thumb-icon-wrapper mb-3"><span class="badge thumb-icon-badge rounded-pill bg-primary py-4 px-5"><i class="fa-fw fad fa-university"></i></span></div><a href=/academia/><h3 class=card-title>Academic Publications and Presentations</h3></a><div>23 Oct 2023</div><p class=card-text>I have spent too long in school and not enough time in the middle of nowhere
&ndash; Baxter Black, DVM
During my time in academia, I have amassed a few notable accomplishments. Of course, as the old saying goes, &ldquo;if it isn&rsquo;t published, then it never happened,&rdquo; so here is a list of everything that actually happened. Several of these articles are also available on my Google Scholar page, but this is the complete list.
<strong><small><a href=/academia/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button></div><div class=card-body><div class="thumb-icon-wrapper mb-3"><span class="badge thumb-icon-badge rounded-pill bg-primary py-4 px-5"><i class="fa-fw fad fa-file-signature"></i></span></div><a href=/contact/><h3 class=card-title>Contact Me</h3></a><div>01 Jul 2023</div><p class=card-text>Contact Me Name Email Phone number Category I'm hiring for artificial insemination Something else Subject Message Cancel Submit
<strong><small><a href=/contact/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button></div><div class=card-body><div class="thumb-icon-wrapper mb-3"><span class="badge thumb-icon-badge rounded-pill bg-primary py-4 px-5"><i class="fa-fw fax fa-bull-sperm"></i></span></div><a href=/ai/><h3 class=card-title>Artificial Insemination</h3></a><div>31 Dec 2022</div><p class=card-text>Cattle artificial insemination services I am licensed in the Great State of Wyoming as a food animal artificial insemination technician. I only offer AI services for cows, even though legally I could AI cows, goats, and sheep. My services are most readily available in the southeast Wyoming area or the Flint Hills of Kansas depending on the time of year. Rate schedule Insemination (per cow) $25.00 5 cow minimum charge Milage (per mile, one-way) $1.
<strong><small><a href=/ai/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button></div><div class=card-body><div class="thumb-icon-wrapper mb-3"><span class="badge thumb-icon-badge rounded-pill bg-primary py-4 px-5"><i class="fa-fw fad fa-browser"></i></span></div><a href=/websites/><h3 class=card-title>My Websites</h3></a><div>01 Mar 2022</div><p class=card-text>I do occasionally build websites for myself and other people. Here is a list of websites I have contributed code to directly, in a vain attempt to gain each of them some search engine cred.
<strong><small><a href=/websites/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button></div><div class=card-body><div class="thumb-icon-wrapper mb-3"><span class="badge thumb-icon-badge rounded-pill bg-primary py-4 px-5"><i class="fa-fw fad fa-video"></i></span></div><a href=/videos/><h3 class=card-title>Videos</h3></a><div>16 Feb 2017</div><p class=card-text>The culmination of all art forms is that of film. A good film must have the plot and language of a good novel, characters as bold and stunning as sculpture, a rhythm as driving and delicate as poetry, frame compositions more stellar that those of photography, and music that speaks to the souls of both the characters on screen and the viewers off.
But I digress. Most of my forays into the world of film are immortalized on my Peertube channel, but I decided to share a few highlights here.
<strong><small><a href=/videos/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<script data-goatcounter=https://millironx.goatcounter.com/count async src=//gc.zgo.at/count.js></script><div class="modal fade" id=extras-modal tabindex=-1 aria-labelledby=extras-modal-label aria-hidden=true><div class="modal-dialog modal-dialog-scrollable modal-dialog-centered"><div class=modal-content><div class=modal-header><h1 class="modal-title fs-5">Bonus content</h1><button type=button class=btn-close data-bs-dismiss=modal aria-label=Close></button></div><div class=modal-body><ul class="nav nav-tabs" role=tablist><li class=nav-item role=presentation><a class="nav-link active" data-bs-toggle=tab href=#oss aria-selected=true role=tab>Open Source</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#privacy role=tab>Privacy</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#debug role=tab>Debug</a></li></ul><div class=tab-content><div class="tab-pane fade show active p-3" id=oss role=tabpanel><a rel=license href=http://creativecommons.org/licenses/by/4.0/><img class="img img-responsive" alt="Creative Commons License" style="border-width:0;display:block;margin:0 auto" src=https://i.creativecommons.org/l/by/4.0/88x31.png></a><p>&#8220;Home&#8221; by
Thomas A. Christensen II is licensed under a
<a rel=license href=http://creativecommons.org/licenses/by/4.0/>Creative Commons Attribution 4.0 International License</a>.</p><p>All images, unless otherwise noted, are licensed under a
<a rel=license href=http://creativecommons.org/licenses/by-nd/4.0/>Creative Commons Attribution-NoDerivatives 4.0 International
License</a>, instead.</p><hr><p>This site is open source!<br><a class="btn btn-dark" href=https://code.millironx.com/millironx/millironx.github.io><i class="fax fa-gitea"></i>&emsp;Get the code! &#187;</a>
<a class="btn btn-dark" href=https://code.millironx.com/millironx/millironx.github.io/src/branch/master/LICENSE><i class="fad fa-scale-balanced"></i>&emsp;MIT Licensed &#187;</a></p><p>In addition, I used a number of excellent open-source libraries
and toolkits in building it. I dedicate this space to
acknowledging them all.</p><table class="table table-condensed table-responsive table-striped"><tr><th>Project name</th><th>URL</th><th>License</th></tr><tr><th>Hugo</th><td><a href=https://gohugo.io/>gohugo.io</a></td><td><a href=https://github.com/gohugoio/hugo/blob/master/LICENSE>Apache License v2</a></td></tr><tr><th>Node.js</th><td><a href=https://nodejs.org/>nodejs.org</a></td><td><a href=https://github.com/nodejs/node/blob/HEAD/LICENSE>MIT License</a></td></tr><tr><th>Bootstrap 5</th><td><a href=https://getbootstrap.com/>getbootstrap.com</a></td><td><a href=https://github.com/twbs/bootstrap/blob/main/LICENSE>MIT License</a></td></tr><tr><th>Bootswatch Lux 5</th><td><a href=https://bootswatch.com/lux/>bootswatch.com</a></td><td><a href=https://github.com/thomaspark/bootswatch/blob/v5/LICENSE>MIT License</a></td></tr><tr><th>JQuery 3</th><td><a href=https://jquery.com/>jquery.com</a></td><td><a href=https://jquery.org/license>MIT License</a></td></tr><tr><th>Font Awesome 6</th><td><a href=https://fontawesome.com/>fontawesome.com</a></td><td><a href=https://fontawesome.com/license/>Font Awesome Pro License</a></td></tr><tr><th>Get S*** Done Toolkit</th><td><a href=https://www.creative-tim.com/product/get-shit-done-kit>creative-tim.com</a></td><td><a href=https://github.com/timcreative/freebies/blob/master/LICENSE.md>MIT License</a></td></tr><tr><th>FitText</th><td><a href=http://fittextjs.com/>fittextjs.com</a></td><td><a href=http://www.wtfpl.net/>WTFPL License</a></td></tr><tr><th>jQuery Mask Plugin</th><td><a href=https://igorescobar.github.io/jQuery-Mask-Plugin/>igorescobar.github.io</a></td><td><a href=https://github.com/igorescobar/jQuery-Mask-Plugin/blob/master/LICENSE>MIT License</a></td></tr><tr><th>PostCSS</th><td><a href=https://postcss.org/>postcss.com</a></td><td><a href=https://github.com/postcss/postcss/blob/main/LICENSE>MIT License</a></td></tr><tr><th>PurgeCSS</th><td><a href=https://purgecss.com/>purgecss.com</a></td><td><a href=https://github.com/FullHuman/purgecss/blob/main/LICENSE>MIT License</a></td></tr></table></div><div class="tab-pane fade p-3" id=privacy role=tabpanel><p>I take privacy very seriously. That said, I do need
<i>some</i> info on how many people visit. As a compromise, this
site uses <a href=https://goatcounter.com>GoatCounter</a>, a
privacy-friendly (as much as possible) web analytics library.</p><p>You may view all analytics gathered at
<a href=https://millironx.goatcounter.com/>millironx.goatcounter.com</a>.</p><p>If you do not wish to participate in my site's analytics, you may
install a content-blocking extension into your browser and block
the domain
<code>gc.zgo.at</code>. I recommend either
<a href=https://github.com/gorhill/uBlock>uBlock Origin</a>
(instructions
<a href=https://github.com/gorhill/uBlock/wiki/Dashboard:-My-filters>here</a>) or <a href=https://noscript.net>NoScript</a> for this
purpose.</p></div><div class="tab-pane fade p-3" id=debug role=tabpanel><dl><dt>cardimage</dt><dd>charolette</dd><dt>description</dt><dd>The homepage of Thomas A. Christensen II</dd><dt>draft</dt><dd>false</dd><dt>iscjklanguage</dt><dd>false</dd><dt>layout</dt><dd>_default/list</dd><dt>menu</dt><dd>map[main:map[params:map[icon:fa-home prefix:fad] weight:-1000]]</dd><dt>motto</dt><dd>&lt;small>My name is Thomas Christensen&lt;/small>&lt;br />I am Milliron X</dd><dt>title</dt><dd>Home</dd></dl></div></div></div></div></div></div></body></html>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Andrea Lu - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
<img src=/graphics/millironx.svg alt="Milliron X"></object>
&ensp;
<span class="font-small-caps font-serif">Milliron X</span></a>
<a href class=navbar-toggler data-bs-toggle=collapse data-bs-target=.sidebar><span class=navbar-toggler-icon></span></a><div class="collapse navbar-collapse sidebar"><ul class="flex-column navbar-nav w-100 justify-content-between"><li class=nav-item><a class="nav-link pl-0" href=/><i class="fad fa-home fa-fw"></i>
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Contact</a></li><li class=nav-item><a class="nav-link pl-0" href=/academia/><i class="fad fa-university fa-fw"></i>
Academia</a></li><li class=nav-item><a class="nav-link pl-0" href=/ai/><i class="fax fa-bull-sperm fa-fw"></i>
Artificial Insemination</a></li><li class=nav-item><a class="nav-link pl-0" href=/videos/><i class="fad fa-video fa-fw"></i>
Videos</a></li><li class=nav-item><a class="nav-link pl-0" href=/websites/><i class="fad fa-browser fa-fw"></i>
Websites</a></li></ul></div></div></nav></aside><main class="col bg-faded py-3 gx-0"><div class=container><header class="d-none d-sm-none d-md-block text-center"><h1 class="font-serif font-small-caps"><object data=/graphics/millironx.svg>
<img src=/graphics/millironx.svg alt="Milliron X"></object>
&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Andrea Lu</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1016/j.vetmic.2022.109447><h3 class=card-title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</h3></a><div>27 Apr 2022</div><a href=/people/tyler-doerksen/ class="icon-link card-link"><i class="fad fa-user"></i> Tyler Doerksen</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/andrea-lu/ class="icon-link card-link"><i class="fad fa-user"></i> Andrea Lu</a>
<a href=/people/lance-noll/ class="icon-link card-link"><i class="fad fa-user"></i> Lance Noll</a>
<a href=/people/jianfa-bai/ class="icon-link card-link"><i class="fad fa-user"></i> Jianfa Bai</a>
<a href=/people/jamie-henningson/ class="icon-link card-link"><i class="fad fa-user"></i> Jamie Henningson</a>
<a href=/people/rachel-palinski/ class="icon-link card-link"><i class="fad fa-user"></i> Rachel Palinski</a><p class=card-text>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.
<strong><small><a href=https://doi.org/10.1016/j.vetmic.2022.109447>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/porcine-rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine rotavirus</a>
<a href=/tags/porcine-enteric-disease/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine enteric disease</a>
<a href=/tags/virome/ class="icon-link card-link"><i class="fad fa-tag"></i> virome</a>
<a href=/tags/rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> rotavirus</a></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<script data-goatcounter=https://millironx.goatcounter.com/count async src=//gc.zgo.at/count.js></script><div class="modal fade" id=extras-modal tabindex=-1 aria-labelledby=extras-modal-label aria-hidden=true><div class="modal-dialog modal-dialog-scrollable modal-dialog-centered"><div class=modal-content><div class=modal-header><h1 class="modal-title fs-5">Bonus content</h1><button type=button class=btn-close data-bs-dismiss=modal aria-label=Close></button></div><div class=modal-body><ul class="nav nav-tabs" role=tablist><li class=nav-item role=presentation><a class="nav-link active" data-bs-toggle=tab href=#oss aria-selected=true role=tab>Open Source</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#privacy role=tab>Privacy</a></li><li class=nav-item role=presentation><a class=nav-link data-bs-toggle=tab href=#debug role=tab>Debug</a></li></ul><div class=tab-content><div class="tab-pane fade show active p-3" id=oss role=tabpanel><a rel=license href=http://creativecommons.org/licenses/by/4.0/><img class="img img-responsive" alt="Creative Commons License" style="border-width:0;display:block;margin:0 auto" src=https://i.creativecommons.org/l/by/4.0/88x31.png></a><p>&#8220;Andrea Lu&#8221; by
Thomas A. Christensen II is licensed under a
<a rel=license href=http://creativecommons.org/licenses/by/4.0/>Creative Commons Attribution 4.0 International License</a>.</p><p>All images, unless otherwise noted, are licensed under a
<a rel=license href=http://creativecommons.org/licenses/by-nd/4.0/>Creative Commons Attribution-NoDerivatives 4.0 International
License</a>, instead.</p><hr><p>This site is open source!<br><a class="btn btn-dark" href=https://code.millironx.com/millironx/millironx.github.io><i class="fax fa-gitea"></i>&emsp;Get the code! &#187;</a>
<a class="btn btn-dark" href=https://code.millironx.com/millironx/millironx.github.io/src/branch/master/LICENSE><i class="fad fa-scale-balanced"></i>&emsp;MIT Licensed &#187;</a></p><p>In addition, I used a number of excellent open-source libraries
and toolkits in building it. I dedicate this space to
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Andrea Lu on MillironX</title><link>https://millironx.com/people/andrea-lu/</link><description>Recent content in Andrea Lu on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Wed, 27 Apr 2022 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/people/andrea-lu/index.xml" rel="self" type="application/rss+xml"/><item><title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</title><link>https://millironx.com/academia/rotavirus-virome/</link><pubDate>Wed, 27 Apr 2022 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/rotavirus-virome/</guid><description>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.</description></item></channel></rss>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Carson J. Silsby - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Carson J. Silsby</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1021/acsestengg.2c00107><h3 class=card-title>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</h3></a><div>02 Sep 2022</div><a href=/people/carson-j.-silsby/ class="icon-link card-link"><i class="fad fa-user"></i> Carson J. Silsby</a>
<a href=/people/jonathan-r.-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan R. Counts</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
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<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured.
<strong><small><a href=https://doi.org/10.1021/acsestengg.2c00107>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/diffusion/ class="icon-link card-link"><i class="fad fa-tag"></i> diffusion</a>
<a href=/tags/hydrogels/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogels</a>
<a href=/tags/ionic-strength/ class="icon-link card-link"><i class="fad fa-tag"></i> ionic strength</a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Hannah C. Cunningham-Hollinger - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Hannah C. Cunningham-Hollinger</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf><h3 class=card-title>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</h3></a><div>12 Jun 2019</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/kathy-j.-austin/ class="icon-link card-link"><i class="fad fa-user"></i> Kathy J. Austin</a>
<a href=/people/kristi-m.-cammack/ class="icon-link card-link"><i class="fad fa-user"></i> Kristi M. Cammack</a>
<a href=/people/hannah-c.-cunningham-hollinger/ class="icon-link card-link"><i class="fad fa-user"></i> Hannah C. Cunningham-Hollinger</a><p class=card-text>Early colonization of the rumen microbiome is critical to host health and long term performance. Factors that influence early colonization include maternal factors such as gestational nutrition and mode of delivery. Therefore, we hypothesized that late gestational nutrition and mode of delivery would influence the calf rumen microbiome. Our objectives were to determine if nutrient restriction during late gestation alters the calf rumen microbiome and determine if ruminal microbiome composition differs in calves born vaginally versus caesarean.
<strong><small><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/gestation/ class="icon-link card-link"><i class="fad fa-tag"></i> gestation</a>
<a href=/tags/metagenomics/ class="icon-link card-link"><i class="fad fa-tag"></i> metagenomics</a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>James A. Fellows Yate - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>James A. Fellows Yate</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1101/2023.10.20.563221><h3 class=card-title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</h3></a><div>23 Oct 2023</div><a href=/people/sofia-stamouli/ class="icon-link card-link"><i class="fad fa-user"></i> Sofia Stamouli</a>
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<a href=/people/james-a.-fellows-yate/ class="icon-link card-link"><i class="fad fa-user"></i> James A. Fellows Yate</a><p class=card-text>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.
<strong><small><a href=https://doi.org/10.1101/2023.10.20.563221>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/genomics/ class="icon-link card-link"><i class="fad fa-tag"></i> genomics</a></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured.
<strong><small><a href=https://doi.org/10.1021/acsestengg.2c00107>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/diffusion/ class="icon-link card-link"><i class="fad fa-tag"></i> diffusion</a>
<a href=/tags/hydrogels/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogels</a>
<a href=/tags/ionic-strength/ class="icon-link card-link"><i class="fad fa-tag"></i> ionic strength</a>
<a href=/tags/polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> polymers</a>
<a href=/tags/transport-properties/ class="icon-link card-link"><i class="fad fa-tag"></i> transport properties</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf><h3 class=card-title>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</h3></a><div>29 Oct 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/samuel-r.-wolfe/ class="icon-link card-link"><i class="fad fa-user"></i> Samuel R. Wolfe</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique challenges for cleanup because of its water solubility, density, and volatility. Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE results in acid generation that inhibits remediating microorganisms. Calcium alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting remediating microbes, however diffusion of TCE or its byproducts through these polymers is unknown. To measure the effective diffusion coefficient of TCE and byproducts through hydrogel membranes, we used a modified diaphragm cell.
<strong><small><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/bioremediation/ class="icon-link card-link"><i class="fad fa-tag"></i> bioremediation</a>
<a href=/tags/polyoxometalate/ class="icon-link card-link"><i class="fad fa-tag"></i> polyoxometalate</a>
<a href=/tags/hydrogel-polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogel polymers</a>
<a href=/tags/proton-transport/ class="icon-link card-link"><i class="fad fa-tag"></i> proton transport</a>
<a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/pva-inbre/><h3 class=card-title>Measuring diffusion of protons in polyvinyalginate</h3></a><div>31 Jul 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents unique challenges for cleanup because of its density and volatility. Use of microorganisms may be a promising remediation method, however metabolism of TCE results in acid buildup, which consequently impedes the ability of microorganisms to perform this remediation. Polyvinylalginate (PVA) shows promise as a useful shield for microorganisms carrying out bioremediation of TCE by surrounding them in a protective biofilm-like layer, however, key information is missing which relates diffusion of TCE or its metabolic products through PVA.
<strong><small><a href=/academia/pva-inbre/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Jamie Henningson - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Jamie Henningson</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1016/j.vetmic.2022.109447><h3 class=card-title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</h3></a><div>27 Apr 2022</div><a href=/people/tyler-doerksen/ class="icon-link card-link"><i class="fad fa-user"></i> Tyler Doerksen</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/andrea-lu/ class="icon-link card-link"><i class="fad fa-user"></i> Andrea Lu</a>
<a href=/people/lance-noll/ class="icon-link card-link"><i class="fad fa-user"></i> Lance Noll</a>
<a href=/people/jianfa-bai/ class="icon-link card-link"><i class="fad fa-user"></i> Jianfa Bai</a>
<a href=/people/jamie-henningson/ class="icon-link card-link"><i class="fad fa-user"></i> Jamie Henningson</a>
<a href=/people/rachel-palinski/ class="icon-link card-link"><i class="fad fa-user"></i> Rachel Palinski</a><p class=card-text>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.
<strong><small><a href=https://doi.org/10.1016/j.vetmic.2022.109447>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/porcine-rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine rotavirus</a>
<a href=/tags/porcine-enteric-disease/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine enteric disease</a>
<a href=/tags/virome/ class="icon-link card-link"><i class="fad fa-tag"></i> virome</a>
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Jamie Henningson on MillironX</title><link>https://millironx.com/people/jamie-henningson/</link><description>Recent content in Jamie Henningson on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Wed, 27 Apr 2022 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/people/jamie-henningson/index.xml" rel="self" type="application/rss+xml"/><item><title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</title><link>https://millironx.com/academia/rotavirus-virome/</link><pubDate>Wed, 27 Apr 2022 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/rotavirus-virome/</guid><description>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.</description></item></channel></rss>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Jianfa Bai - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Jianfa Bai</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1016/j.vetmic.2022.109447><h3 class=card-title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</h3></a><div>27 Apr 2022</div><a href=/people/tyler-doerksen/ class="icon-link card-link"><i class="fad fa-user"></i> Tyler Doerksen</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/andrea-lu/ class="icon-link card-link"><i class="fad fa-user"></i> Andrea Lu</a>
<a href=/people/lance-noll/ class="icon-link card-link"><i class="fad fa-user"></i> Lance Noll</a>
<a href=/people/jianfa-bai/ class="icon-link card-link"><i class="fad fa-user"></i> Jianfa Bai</a>
<a href=/people/jamie-henningson/ class="icon-link card-link"><i class="fad fa-user"></i> Jamie Henningson</a>
<a href=/people/rachel-palinski/ class="icon-link card-link"><i class="fad fa-user"></i> Rachel Palinski</a><p class=card-text>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.
<strong><small><a href=https://doi.org/10.1016/j.vetmic.2022.109447>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/porcine-rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine rotavirus</a>
<a href=/tags/porcine-enteric-disease/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine enteric disease</a>
<a href=/tags/virome/ class="icon-link card-link"><i class="fad fa-tag"></i> virome</a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Jonathan Counts - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Jonathan Counts</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf><h3 class=card-title>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</h3></a><div>29 Oct 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/samuel-r.-wolfe/ class="icon-link card-link"><i class="fad fa-user"></i> Samuel R. Wolfe</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique challenges for cleanup because of its water solubility, density, and volatility. Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE results in acid generation that inhibits remediating microorganisms. Calcium alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting remediating microbes, however diffusion of TCE or its byproducts through these polymers is unknown. To measure the effective diffusion coefficient of TCE and byproducts through hydrogel membranes, we used a modified diaphragm cell.
<strong><small><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/bioremediation/ class="icon-link card-link"><i class="fad fa-tag"></i> bioremediation</a>
<a href=/tags/polyoxometalate/ class="icon-link card-link"><i class="fad fa-tag"></i> polyoxometalate</a>
<a href=/tags/hydrogel-polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogel polymers</a>
<a href=/tags/proton-transport/ class="icon-link card-link"><i class="fad fa-tag"></i> proton transport</a>
<a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/pva-inbre/><h3 class=card-title>Measuring diffusion of protons in polyvinyalginate</h3></a><div>31 Jul 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents unique challenges for cleanup because of its density and volatility. Use of microorganisms may be a promising remediation method, however metabolism of TCE results in acid buildup, which consequently impedes the ability of microorganisms to perform this remediation. Polyvinylalginate (PVA) shows promise as a useful shield for microorganisms carrying out bioremediation of TCE by surrounding them in a protective biofilm-like layer, however, key information is missing which relates diffusion of TCE or its metabolic products through PVA.
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Jonathan Counts on MillironX</title><link>https://millironx.com/people/jonathan-counts/</link><description>Recent content in Jonathan Counts on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Mon, 29 Oct 2018 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/people/jonathan-counts/index.xml" rel="self" type="application/rss+xml"/><item><title>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</title><link>https://millironx.com/academia/pva-aiche/</link><pubDate>Mon, 29 Oct 2018 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/pva-aiche/</guid><description>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique challenges for cleanup because of its water solubility, density, and volatility. Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE results in acid generation that inhibits remediating microorganisms. Calcium alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting remediating microbes, however diffusion of TCE or its byproducts through these polymers is unknown. To measure the effective diffusion coefficient of TCE and byproducts through hydrogel membranes, we used a modified diaphragm cell.</description></item><item><title>Measuring diffusion of protons in polyvinyalginate</title><link>https://millironx.com/academia/pva-inbre/</link><pubDate>Tue, 31 Jul 2018 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/pva-inbre/</guid><description>Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents unique challenges for cleanup because of its density and volatility. Use of microorganisms may be a promising remediation method, however metabolism of TCE results in acid buildup, which consequently impedes the ability of microorganisms to perform this remediation. Polyvinylalginate (PVA) shows promise as a useful shield for microorganisms carrying out bioremediation of TCE by surrounding them in a protective biofilm-like layer, however, key information is missing which relates diffusion of TCE or its metabolic products through PVA.</description></item></channel></rss>

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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Jonathan R. Counts</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1021/acsestengg.2c00107><h3 class=card-title>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</h3></a><div>02 Sep 2022</div><a href=/people/carson-j.-silsby/ class="icon-link card-link"><i class="fad fa-user"></i> Carson J. Silsby</a>
<a href=/people/jonathan-r.-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan R. Counts</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured.
<strong><small><a href=https://doi.org/10.1021/acsestengg.2c00107>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/diffusion/ class="icon-link card-link"><i class="fad fa-tag"></i> diffusion</a>
<a href=/tags/hydrogels/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogels</a>
<a href=/tags/ionic-strength/ class="icon-link card-link"><i class="fad fa-tag"></i> ionic strength</a>
<a href=/tags/polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> polymers</a>
<a href=/tags/transport-properties/ class="icon-link card-link"><i class="fad fa-tag"></i> transport properties</a></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Kathy J. Austin - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Kathy J. Austin</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf><h3 class=card-title>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</h3></a><div>12 Jun 2019</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/kathy-j.-austin/ class="icon-link card-link"><i class="fad fa-user"></i> Kathy J. Austin</a>
<a href=/people/kristi-m.-cammack/ class="icon-link card-link"><i class="fad fa-user"></i> Kristi M. Cammack</a>
<a href=/people/hannah-c.-cunningham-hollinger/ class="icon-link card-link"><i class="fad fa-user"></i> Hannah C. Cunningham-Hollinger</a><p class=card-text>Early colonization of the rumen microbiome is critical to host health and long term performance. Factors that influence early colonization include maternal factors such as gestational nutrition and mode of delivery. Therefore, we hypothesized that late gestational nutrition and mode of delivery would influence the calf rumen microbiome. Our objectives were to determine if nutrient restriction during late gestation alters the calf rumen microbiome and determine if ruminal microbiome composition differs in calves born vaginally versus caesarean.
<strong><small><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/gestation/ class="icon-link card-link"><i class="fad fa-tag"></i> gestation</a>
<a href=/tags/metagenomics/ class="icon-link card-link"><i class="fad fa-tag"></i> metagenomics</a>
<a href=/tags/microbiome/ class="icon-link card-link"><i class="fad fa-tag"></i> microbiome</a>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Kristi M. Cammack</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf><h3 class=card-title>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</h3></a><div>12 Jun 2019</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/kathy-j.-austin/ class="icon-link card-link"><i class="fad fa-user"></i> Kathy J. Austin</a>
<a href=/people/kristi-m.-cammack/ class="icon-link card-link"><i class="fad fa-user"></i> Kristi M. Cammack</a>
<a href=/people/hannah-c.-cunningham-hollinger/ class="icon-link card-link"><i class="fad fa-user"></i> Hannah C. Cunningham-Hollinger</a><p class=card-text>Early colonization of the rumen microbiome is critical to host health and long term performance. Factors that influence early colonization include maternal factors such as gestational nutrition and mode of delivery. Therefore, we hypothesized that late gestational nutrition and mode of delivery would influence the calf rumen microbiome. Our objectives were to determine if nutrient restriction during late gestation alters the calf rumen microbiome and determine if ruminal microbiome composition differs in calves born vaginally versus caesarean.
<strong><small><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/gestation/ class="icon-link card-link"><i class="fad fa-tag"></i> gestation</a>
<a href=/tags/metagenomics/ class="icon-link card-link"><i class="fad fa-tag"></i> metagenomics</a>
<a href=/tags/microbiome/ class="icon-link card-link"><i class="fad fa-tag"></i> microbiome</a>
<a href=/tags/rumen/ class="icon-link card-link"><i class="fad fa-tag"></i> rumen</a></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Kristi M. Cammack on MillironX</title><link>https://millironx.com/people/kristi-m.-cammack/</link><description>Recent content in Kristi M. Cammack on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Wed, 12 Jun 2019 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/people/kristi-m.-cammack/index.xml" rel="self" type="application/rss+xml"/><item><title>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</title><link>https://millironx.com/academia/metagenomics/</link><pubDate>Wed, 12 Jun 2019 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/metagenomics/</guid><description>Early colonization of the rumen microbiome is critical to host health and long term performance. Factors that influence early colonization include maternal factors such as gestational nutrition and mode of delivery. Therefore, we hypothesized that late gestational nutrition and mode of delivery would influence the calf rumen microbiome. Our objectives were to determine if nutrient restriction during late gestation alters the calf rumen microbiome and determine if ruminal microbiome composition differs in calves born vaginally versus caesarean.</description></item></channel></rss>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Kristopher V. Waynant - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Kristopher V. Waynant</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1021/acsestengg.2c00107><h3 class=card-title>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</h3></a><div>02 Sep 2022</div><a href=/people/carson-j.-silsby/ class="icon-link card-link"><i class="fad fa-user"></i> Carson J. Silsby</a>
<a href=/people/jonathan-r.-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan R. Counts</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured.
<strong><small><a href=https://doi.org/10.1021/acsestengg.2c00107>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/diffusion/ class="icon-link card-link"><i class="fad fa-tag"></i> diffusion</a>
<a href=/tags/hydrogels/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogels</a>
<a href=/tags/ionic-strength/ class="icon-link card-link"><i class="fad fa-tag"></i> ionic strength</a>
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fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/samuel-r.-wolfe/ class="icon-link card-link"><i class="fad fa-user"></i> Samuel R. Wolfe</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique challenges for cleanup because of its water solubility, density, and volatility. Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE results in acid generation that inhibits remediating microorganisms. Calcium alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting remediating microbes, however diffusion of TCE or its byproducts through these polymers is unknown. To measure the effective diffusion coefficient of TCE and byproducts through hydrogel membranes, we used a modified diaphragm cell.
<strong><small><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/bioremediation/ class="icon-link card-link"><i class="fad fa-tag"></i> bioremediation</a>
<a href=/tags/polyoxometalate/ class="icon-link card-link"><i class="fad fa-tag"></i> polyoxometalate</a>
<a href=/tags/hydrogel-polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogel polymers</a>
<a href=/tags/proton-transport/ class="icon-link card-link"><i class="fad fa-tag"></i> proton transport</a>
<a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Lance Noll - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Lance Noll</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1016/j.vetmic.2022.109447><h3 class=card-title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</h3></a><div>27 Apr 2022</div><a href=/people/tyler-doerksen/ class="icon-link card-link"><i class="fad fa-user"></i> Tyler Doerksen</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/andrea-lu/ class="icon-link card-link"><i class="fad fa-user"></i> Andrea Lu</a>
<a href=/people/lance-noll/ class="icon-link card-link"><i class="fad fa-user"></i> Lance Noll</a>
<a href=/people/jianfa-bai/ class="icon-link card-link"><i class="fad fa-user"></i> Jianfa Bai</a>
<a href=/people/jamie-henningson/ class="icon-link card-link"><i class="fad fa-user"></i> Jamie Henningson</a>
<a href=/people/rachel-palinski/ class="icon-link card-link"><i class="fad fa-user"></i> Rachel Palinski</a><p class=card-text>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.
<strong><small><a href=https://doi.org/10.1016/j.vetmic.2022.109447>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/porcine-rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine rotavirus</a>
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Lance Noll on MillironX</title><link>https://millironx.com/people/lance-noll/</link><description>Recent content in Lance Noll on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Wed, 27 Apr 2022 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/people/lance-noll/index.xml" rel="self" type="application/rss+xml"/><item><title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</title><link>https://millironx.com/academia/rotavirus-virome/</link><pubDate>Wed, 27 Apr 2022 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/rotavirus-virome/</guid><description>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.</description></item></channel></rss>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Lili Andersson-Li - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Lili Andersson-Li</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1101/2023.10.20.563221><h3 class=card-title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</h3></a><div>23 Oct 2023</div><a href=/people/sofia-stamouli/ class="icon-link card-link"><i class="fad fa-user"></i> Sofia Stamouli</a>
<a href=/people/moritz-e.-beber/ class="icon-link card-link"><i class="fad fa-user"></i> Moritz E. Beber</a>
<a href=/people/tanja-normark/ class="icon-link card-link"><i class="fad fa-user"></i> Tanja Normark</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
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<a href=/people/maxime-borry/ class="icon-link card-link"><i class="fad fa-user"></i> Maxime Borry</a>
<a href=/people/mahwash-jamy/ class="icon-link card-link"><i class="fad fa-user"></i> Mahwash Jamy</a>
<a href=/people/nf-core-community/ class="icon-link card-link"><i class="fad fa-user"></i> nf-core community</a>
<a href=/people/james-a.-fellows-yate/ class="icon-link card-link"><i class="fad fa-user"></i> James A. Fellows Yate</a><p class=card-text>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.
<strong><small><a href=https://doi.org/10.1101/2023.10.20.563221>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/genomics/ class="icon-link card-link"><i class="fad fa-tag"></i> genomics</a></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Mahwash Jamy - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Mahwash Jamy</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1101/2023.10.20.563221><h3 class=card-title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</h3></a><div>23 Oct 2023</div><a href=/people/sofia-stamouli/ class="icon-link card-link"><i class="fad fa-user"></i> Sofia Stamouli</a>
<a href=/people/moritz-e.-beber/ class="icon-link card-link"><i class="fad fa-user"></i> Moritz E. Beber</a>
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<a href=/people/mahwash-jamy/ class="icon-link card-link"><i class="fad fa-user"></i> Mahwash Jamy</a>
<a href=/people/nf-core-community/ class="icon-link card-link"><i class="fad fa-user"></i> nf-core community</a>
<a href=/people/james-a.-fellows-yate/ class="icon-link card-link"><i class="fad fa-user"></i> James A. Fellows Yate</a><p class=card-text>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.
<strong><small><a href=https://doi.org/10.1101/2023.10.20.563221>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/genomics/ class="icon-link card-link"><i class="fad fa-tag"></i> genomics</a></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Mahwash Jamy on MillironX</title><link>https://millironx.com/people/mahwash-jamy/</link><description>Recent content in Mahwash Jamy on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Mon, 23 Oct 2023 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/people/mahwash-jamy/index.xml" rel="self" type="application/rss+xml"/><item><title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</title><link>https://millironx.com/academia/taxprofiler/</link><pubDate>Mon, 23 Oct 2023 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/taxprofiler/</guid><description>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.</description></item></channel></rss>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Mark F. Roll - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Mark F. Roll</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1021/acsestengg.2c00107><h3 class=card-title>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</h3></a><div>02 Sep 2022</div><a href=/people/carson-j.-silsby/ class="icon-link card-link"><i class="fad fa-user"></i> Carson J. Silsby</a>
<a href=/people/jonathan-r.-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan R. Counts</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured.
<strong><small><a href=https://doi.org/10.1021/acsestengg.2c00107>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/diffusion/ class="icon-link card-link"><i class="fad fa-tag"></i> diffusion</a>
<a href=/tags/hydrogels/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogels</a>
<a href=/tags/ionic-strength/ class="icon-link card-link"><i class="fad fa-tag"></i> ionic strength</a>
<a href=/tags/polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> polymers</a>
<a href=/tags/transport-properties/ class="icon-link card-link"><i class="fad fa-tag"></i> transport properties</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf><h3 class=card-title>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</h3></a><div>29 Oct 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/samuel-r.-wolfe/ class="icon-link card-link"><i class="fad fa-user"></i> Samuel R. Wolfe</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique challenges for cleanup because of its water solubility, density, and volatility. Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE results in acid generation that inhibits remediating microorganisms. Calcium alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting remediating microbes, however diffusion of TCE or its byproducts through these polymers is unknown. To measure the effective diffusion coefficient of TCE and byproducts through hydrogel membranes, we used a modified diaphragm cell.
<strong><small><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/bioremediation/ class="icon-link card-link"><i class="fad fa-tag"></i> bioremediation</a>
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<a href=/tags/hydrogel-polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogel polymers</a>
<a href=/tags/proton-transport/ class="icon-link card-link"><i class="fad fa-tag"></i> proton transport</a>
<a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Mark F. Roll on MillironX</title><link>https://millironx.com/people/mark-f.-roll/</link><description>Recent content in Mark F. Roll on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Fri, 02 Sep 2022 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/people/mark-f.-roll/index.xml" rel="self" type="application/rss+xml"/><item><title>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</title><link>https://millironx.com/academia/hydronium-pva/</link><pubDate>Fri, 02 Sep 2022 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/hydronium-pva/</guid><description>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured.</description></item><item><title>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</title><link>https://millironx.com/academia/pva-aiche/</link><pubDate>Mon, 29 Oct 2018 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/pva-aiche/</guid><description>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique challenges for cleanup because of its water solubility, density, and volatility. Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE results in acid generation that inhibits remediating microorganisms. Calcium alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting remediating microbes, however diffusion of TCE or its byproducts through these polymers is unknown. To measure the effective diffusion coefficient of TCE and byproducts through hydrogel membranes, we used a modified diaphragm cell.</description></item></channel></rss>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Maxime Borry - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Maxime Borry</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1101/2023.10.20.563221><h3 class=card-title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</h3></a><div>23 Oct 2023</div><a href=/people/sofia-stamouli/ class="icon-link card-link"><i class="fad fa-user"></i> Sofia Stamouli</a>
<a href=/people/moritz-e.-beber/ class="icon-link card-link"><i class="fad fa-user"></i> Moritz E. Beber</a>
<a href=/people/tanja-normark/ class="icon-link card-link"><i class="fad fa-user"></i> Tanja Normark</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
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<a href=/people/maxime-borry/ class="icon-link card-link"><i class="fad fa-user"></i> Maxime Borry</a>
<a href=/people/mahwash-jamy/ class="icon-link card-link"><i class="fad fa-user"></i> Mahwash Jamy</a>
<a href=/people/nf-core-community/ class="icon-link card-link"><i class="fad fa-user"></i> nf-core community</a>
<a href=/people/james-a.-fellows-yate/ class="icon-link card-link"><i class="fad fa-user"></i> James A. Fellows Yate</a><p class=card-text>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.
<strong><small><a href=https://doi.org/10.1101/2023.10.20.563221>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/genomics/ class="icon-link card-link"><i class="fad fa-tag"></i> genomics</a></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Moritz E. Beber - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Moritz E. Beber</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1101/2023.10.20.563221><h3 class=card-title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</h3></a><div>23 Oct 2023</div><a href=/people/sofia-stamouli/ class="icon-link card-link"><i class="fad fa-user"></i> Sofia Stamouli</a>
<a href=/people/moritz-e.-beber/ class="icon-link card-link"><i class="fad fa-user"></i> Moritz E. Beber</a>
<a href=/people/tanja-normark/ class="icon-link card-link"><i class="fad fa-user"></i> Tanja Normark</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/lili-andersson-li/ class="icon-link card-link"><i class="fad fa-user"></i> Lili Andersson-Li</a>
<a href=/people/maxime-borry/ class="icon-link card-link"><i class="fad fa-user"></i> Maxime Borry</a>
<a href=/people/mahwash-jamy/ class="icon-link card-link"><i class="fad fa-user"></i> Mahwash Jamy</a>
<a href=/people/nf-core-community/ class="icon-link card-link"><i class="fad fa-user"></i> nf-core community</a>
<a href=/people/james-a.-fellows-yate/ class="icon-link card-link"><i class="fad fa-user"></i> James A. Fellows Yate</a><p class=card-text>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.
<strong><small><a href=https://doi.org/10.1101/2023.10.20.563221>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/genomics/ class="icon-link card-link"><i class="fad fa-tag"></i> genomics</a></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Moritz E. Beber on MillironX</title><link>https://millironx.com/people/moritz-e.-beber/</link><description>Recent content in Moritz E. Beber on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Mon, 23 Oct 2023 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/people/moritz-e.-beber/index.xml" rel="self" type="application/rss+xml"/><item><title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</title><link>https://millironx.com/academia/taxprofiler/</link><pubDate>Mon, 23 Oct 2023 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/taxprofiler/</guid><description>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.</description></item></channel></rss>

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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>nf-core community</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1101/2023.10.20.563221><h3 class=card-title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</h3></a><div>23 Oct 2023</div><a href=/people/sofia-stamouli/ class="icon-link card-link"><i class="fad fa-user"></i> Sofia Stamouli</a>
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<a href=/people/james-a.-fellows-yate/ class="icon-link card-link"><i class="fad fa-user"></i> James A. Fellows Yate</a><p class=card-text>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.
<strong><small><a href=https://doi.org/10.1101/2023.10.20.563221>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/genomics/ class="icon-link card-link"><i class="fad fa-tag"></i> genomics</a></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Rachel Palinski - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Rachel Palinski</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1016/j.vetmic.2022.109447><h3 class=card-title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</h3></a><div>27 Apr 2022</div><a href=/people/tyler-doerksen/ class="icon-link card-link"><i class="fad fa-user"></i> Tyler Doerksen</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/andrea-lu/ class="icon-link card-link"><i class="fad fa-user"></i> Andrea Lu</a>
<a href=/people/lance-noll/ class="icon-link card-link"><i class="fad fa-user"></i> Lance Noll</a>
<a href=/people/jianfa-bai/ class="icon-link card-link"><i class="fad fa-user"></i> Jianfa Bai</a>
<a href=/people/jamie-henningson/ class="icon-link card-link"><i class="fad fa-user"></i> Jamie Henningson</a>
<a href=/people/rachel-palinski/ class="icon-link card-link"><i class="fad fa-user"></i> Rachel Palinski</a><p class=card-text>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.
<strong><small><a href=https://doi.org/10.1016/j.vetmic.2022.109447>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/porcine-rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine rotavirus</a>
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<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Rachel Palinski on MillironX</title><link>https://millironx.com/people/rachel-palinski/</link><description>Recent content in Rachel Palinski on MillironX</description><generator>Hugo -- gohugo.io</generator><language>en-us</language><lastBuildDate>Wed, 27 Apr 2022 00:00:00 +0000</lastBuildDate><atom:link href="https://millironx.com/people/rachel-palinski/index.xml" rel="self" type="application/rss+xml"/><item><title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</title><link>https://millironx.com/academia/rotavirus-virome/</link><pubDate>Wed, 27 Apr 2022 00:00:00 +0000</pubDate><guid>https://millironx.com/academia/rotavirus-virome/</guid><description>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.</description></item></channel></rss>

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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Samuel R. Wolfe - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Samuel R. Wolfe</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf><h3 class=card-title>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</h3></a><div>29 Oct 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/samuel-r.-wolfe/ class="icon-link card-link"><i class="fad fa-user"></i> Samuel R. Wolfe</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique challenges for cleanup because of its water solubility, density, and volatility. Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE results in acid generation that inhibits remediating microorganisms. Calcium alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting remediating microbes, however diffusion of TCE or its byproducts through these polymers is unknown. To measure the effective diffusion coefficient of TCE and byproducts through hydrogel membranes, we used a modified diaphragm cell.
<strong><small><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/bioremediation/ class="icon-link card-link"><i class="fad fa-tag"></i> bioremediation</a>
<a href=/tags/polyoxometalate/ class="icon-link card-link"><i class="fad fa-tag"></i> polyoxometalate</a>
<a href=/tags/hydrogel-polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogel polymers</a>
<a href=/tags/proton-transport/ class="icon-link card-link"><i class="fad fa-tag"></i> proton transport</a>
<a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Sofia Stamouli</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1101/2023.10.20.563221><h3 class=card-title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</h3></a><div>23 Oct 2023</div><a href=/people/sofia-stamouli/ class="icon-link card-link"><i class="fad fa-user"></i> Sofia Stamouli</a>
<a href=/people/moritz-e.-beber/ class="icon-link card-link"><i class="fad fa-user"></i> Moritz E. Beber</a>
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<a href=/people/james-a.-fellows-yate/ class="icon-link card-link"><i class="fad fa-user"></i> James A. Fellows Yate</a><p class=card-text>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Tanja Normark - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Tanja Normark</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1101/2023.10.20.563221><h3 class=card-title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</h3></a><div>23 Oct 2023</div><a href=/people/sofia-stamouli/ class="icon-link card-link"><i class="fad fa-user"></i> Sofia Stamouli</a>
<a href=/people/moritz-e.-beber/ class="icon-link card-link"><i class="fad fa-user"></i> Moritz E. Beber</a>
<a href=/people/tanja-normark/ class="icon-link card-link"><i class="fad fa-user"></i> Tanja Normark</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
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<a href=/people/mahwash-jamy/ class="icon-link card-link"><i class="fad fa-user"></i> Mahwash Jamy</a>
<a href=/people/nf-core-community/ class="icon-link card-link"><i class="fad fa-user"></i> nf-core community</a>
<a href=/people/james-a.-fellows-yate/ class="icon-link card-link"><i class="fad fa-user"></i> James A. Fellows Yate</a><p class=card-text>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.
<strong><small><a href=https://doi.org/10.1101/2023.10.20.563221>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/genomics/ class="icon-link card-link"><i class="fad fa-tag"></i> genomics</a></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Thomas A. Christensen II</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1101/2023.10.20.563221><h3 class=card-title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</h3></a><div>23 Oct 2023</div><a href=/people/sofia-stamouli/ class="icon-link card-link"><i class="fad fa-user"></i> Sofia Stamouli</a>
<a href=/people/moritz-e.-beber/ class="icon-link card-link"><i class="fad fa-user"></i> Moritz E. Beber</a>
<a href=/people/tanja-normark/ class="icon-link card-link"><i class="fad fa-user"></i> Tanja Normark</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/lili-andersson-li/ class="icon-link card-link"><i class="fad fa-user"></i> Lili Andersson-Li</a>
<a href=/people/maxime-borry/ class="icon-link card-link"><i class="fad fa-user"></i> Maxime Borry</a>
<a href=/people/mahwash-jamy/ class="icon-link card-link"><i class="fad fa-user"></i> Mahwash Jamy</a>
<a href=/people/nf-core-community/ class="icon-link card-link"><i class="fad fa-user"></i> nf-core community</a>
<a href=/people/james-a.-fellows-yate/ class="icon-link card-link"><i class="fad fa-user"></i> James A. Fellows Yate</a><p class=card-text>Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline.
<strong><small><a href=https://doi.org/10.1101/2023.10.20.563221>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/genomics/ class="icon-link card-link"><i class="fad fa-tag"></i> genomics</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1021/acsestengg.2c00107><h3 class=card-title>Investigation of Hydronium Diffusion in Poly(vinyl alcohol) Hydrogels: A Critical First Step to Describe Acid Transport for Encapsulated Bioremediation</h3></a><div>02 Sep 2022</div><a href=/people/carson-j.-silsby/ class="icon-link card-link"><i class="fad fa-user"></i> Carson J. Silsby</a>
<a href=/people/jonathan-r.-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan R. Counts</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Bioremediation of chlorinated aliphatic hydrocarbon-contaminated aquifers can be hindered by high contaminant concentrations and acids generated during remediation. Encapsulating microbes in hydrogels may provide a protective, tunable environment from inhibiting compounds; however, current approaches to formulate successful encapsulated systems rely on trial and error rather than engineering approaches because fundamental information on mass-transfer coefficients is lacking. To address this knowledge gap, hydronium ion mass-transfer rates through two commonly used hydrogel materials, poly(vinyl alcohol) and alginic acid, under two solidification methods (chemical and cryogenic) were measured.
<strong><small><a href=https://doi.org/10.1021/acsestengg.2c00107>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/diffusion/ class="icon-link card-link"><i class="fad fa-tag"></i> diffusion</a>
<a href=/tags/hydrogels/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogels</a>
<a href=/tags/ionic-strength/ class="icon-link card-link"><i class="fad fa-tag"></i> ionic strength</a>
<a href=/tags/polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> polymers</a>
<a href=/tags/transport-properties/ class="icon-link card-link"><i class="fad fa-tag"></i> transport properties</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1016/j.vetmic.2022.109447><h3 class=card-title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</h3></a><div>27 Apr 2022</div><a href=/people/tyler-doerksen/ class="icon-link card-link"><i class="fad fa-user"></i> Tyler Doerksen</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/andrea-lu/ class="icon-link card-link"><i class="fad fa-user"></i> Andrea Lu</a>
<a href=/people/lance-noll/ class="icon-link card-link"><i class="fad fa-user"></i> Lance Noll</a>
<a href=/people/jianfa-bai/ class="icon-link card-link"><i class="fad fa-user"></i> Jianfa Bai</a>
<a href=/people/jamie-henningson/ class="icon-link card-link"><i class="fad fa-user"></i> Jamie Henningson</a>
<a href=/people/rachel-palinski/ class="icon-link card-link"><i class="fad fa-user"></i> Rachel Palinski</a><p class=card-text>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.
<strong><small><a href=https://doi.org/10.1016/j.vetmic.2022.109447>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/porcine-rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine rotavirus</a>
<a href=/tags/porcine-enteric-disease/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine enteric disease</a>
<a href=/tags/virome/ class="icon-link card-link"><i class="fad fa-tag"></i> virome</a>
<a href=/tags/rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> rotavirus</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/thesis/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Thesis><i class="fad fa-graduation-cap fa-fw"></i></a></div><div class=card-body><a href=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2><h3 class=card-title>Polyoxometalate Incorporation and Effects on Proton Transport in Hydrogel Polymers</h3></a><div>07 Aug 2020</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a><p class=card-text>Polyoxometalate clusters embedded into hydrogel biobeads may be able to solve the challenges posed by free proton generation during remediation of trichloroethylene by acting as buffers and reducing protons to hydrogen gas. In this thesis, the challenges posed by systems that contain both diffusion and reaction processes for protons are considered mathematically, and a computer simulation to was developed to prove the relationship between diaphragm cell lag period and reactive capabilities of membranes.
<strong><small><a href=https://www.proquest.com/dissertations-theses/polyoxometalate-incorporation-effects-on-proton/docview/2502214356/se-2>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/bioremediation/ class="icon-link card-link"><i class="fad fa-tag"></i> bioremediation</a>
<a href=/tags/polyoxometalate/ class="icon-link card-link"><i class="fad fa-tag"></i> polyoxometalate</a>
<a href=/tags/hydrogel-polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogel polymers</a>
<a href=/tags/proton-transport/ class="icon-link card-link"><i class="fad fa-tag"></i> proton transport</a>
<a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf><h3 class=card-title>Metagenomic analysis of rumen populations in week-old calves as altered by maternal late gestational nutrition and mode of delivery</h3></a><div>12 Jun 2019</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/kathy-j.-austin/ class="icon-link card-link"><i class="fad fa-user"></i> Kathy J. Austin</a>
<a href=/people/kristi-m.-cammack/ class="icon-link card-link"><i class="fad fa-user"></i> Kristi M. Cammack</a>
<a href=/people/hannah-c.-cunningham-hollinger/ class="icon-link card-link"><i class="fad fa-user"></i> Hannah C. Cunningham-Hollinger</a><p class=card-text>Early colonization of the rumen microbiome is critical to host health and long term performance. Factors that influence early colonization include maternal factors such as gestational nutrition and mode of delivery. Therefore, we hypothesized that late gestational nutrition and mode of delivery would influence the calf rumen microbiome. Our objectives were to determine if nutrient restriction during late gestation alters the calf rumen microbiome and determine if ruminal microbiome composition differs in calves born vaginally versus caesarean.
<strong><small><a href=/academia/metagenomics/metagenomics_analysis_of_rumen_populations.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/gestation/ class="icon-link card-link"><i class="fad fa-tag"></i> gestation</a>
<a href=/tags/metagenomics/ class="icon-link card-link"><i class="fad fa-tag"></i> metagenomics</a>
<a href=/tags/microbiome/ class="icon-link card-link"><i class="fad fa-tag"></i> microbiome</a>
<a href=/tags/rumen/ class="icon-link card-link"><i class="fad fa-tag"></i> rumen</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/thesis/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Thesis><i class="fad fa-graduation-cap fa-fw"></i></a></div><div class=card-body><img class="img img-thumbnail float-start me-3 md-max-width-33" src=/academia/cheme-car/thumbnail_hua27ceb9f6c1a8b01057b70de792ffbc6_1566619_600x0_resize_q75_box.jpg alt="Thumbnail of thumbnail.jpg">
<a href=https://doi.org/10.15786/13700938.v1><h3 class=card-title>The ChemE Car that Cud: AIChE ChemE Car Engineering Design Proposal</h3></a><div>14 May 2019</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a><p class=card-text>The ChemE Car That Cud showcases Wyoming&rsquo;s dominant industries of agriculture and mining by utilizing rumen fluid from a cannulated beef cow to generate hydrogen to be used in a hydrogen fuel cell and radioactive cesium, a byproduct of uranium that is often obtained from Wyoming&rsquo;s mines, to time the car&rsquo;s stop. The concentration of cesium-137 source is measured using the radioactive decay of cesium shielded by aluminum. The painted aluminum chassis was obtained from a previous team at UW, and modified using plastic k&rsquo;nex toys to adapt to the current power source and stopping mechanism.
<strong><small><a href=https://doi.org/10.15786/13700938.v1>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a>
<a href=/tags/aiche/ class="icon-link card-link"><i class="fad fa-tag"></i> AIChE</a>
<a href=/tags/radiation/ class="icon-link card-link"><i class="fad fa-tag"></i> radiation</a>
<a href=/tags/rumen/ class="icon-link card-link"><i class="fad fa-tag"></i> rumen</a>
<a href=/tags/microbial-electrolysis-cells/ class="icon-link card-link"><i class="fad fa-tag"></i> microbial electrolysis cells</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf><h3 class=card-title>Measuring Diffusion of Trichlorethylene Breakdown Products in Polyvinylalginate</h3></a><div>29 Oct 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/samuel-r.-wolfe/ class="icon-link card-link"><i class="fad fa-user"></i> Samuel R. Wolfe</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/mark-f.-roll/ class="icon-link card-link"><i class="fad fa-user"></i> Mark F. Roll</a>
<a href=/people/kristopher-v.-waynant/ class="icon-link card-link"><i class="fad fa-user"></i> Kristopher V. Waynant</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE), a toxic and carcinogenic contaminant, presents unique challenges for cleanup because of its water solubility, density, and volatility. Bioremediation of TCE is a promising cleanup method; however, metabolism of TCE results in acid generation that inhibits remediating microorganisms. Calcium alginate(CA)-polyvinylalcohol (PVA) hydrogels show promise for protecting remediating microbes, however diffusion of TCE or its byproducts through these polymers is unknown. To measure the effective diffusion coefficient of TCE and byproducts through hydrogel membranes, we used a modified diaphragm cell.
<strong><small><a href=/academia/pva-aiche/measuring_diffusion_of_trichloroethylene.pdf>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/bioremediation/ class="icon-link card-link"><i class="fad fa-tag"></i> bioremediation</a>
<a href=/tags/polyoxometalate/ class="icon-link card-link"><i class="fad fa-tag"></i> polyoxometalate</a>
<a href=/tags/hydrogel-polymers/ class="icon-link card-link"><i class="fad fa-tag"></i> hydrogel polymers</a>
<a href=/tags/proton-transport/ class="icon-link card-link"><i class="fad fa-tag"></i> proton transport</a>
<a href=/tags/chemical-engineering/ class="icon-link card-link"><i class="fad fa-tag"></i> chemical engineering</a></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/presentation/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Presentation><i class="fad fa-podium fa-fw"></i></a></div><div class=card-body><a href=/academia/how-to-build-a-cow-cud-fuel-cell/><h3 class=card-title>How to Build a Cow-Cud Fuel Cell</h3></a><div>01 Aug 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a><p class=card-text><strong><small><a href=/academia/how-to-build-a-cow-cud-fuel-cell/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/poster/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Poster><i class="fad fa-presentation fa-fw"></i></a></div><div class=card-body><a href=/academia/pva-inbre/><h3 class=card-title>Measuring diffusion of protons in polyvinyalginate</h3></a><div>31 Jul 2018</div><a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/jonathan-counts/ class="icon-link card-link"><i class="fad fa-user"></i> Jonathan Counts</a>
<a href=/people/james-g.-moberly/ class="icon-link card-link"><i class="fad fa-user"></i> James G. Moberly</a><p class=card-text>Trichloroethylene (TCE) is a toxic and carcinogenic contaminant that presents unique challenges for cleanup because of its density and volatility. Use of microorganisms may be a promising remediation method, however metabolism of TCE results in acid buildup, which consequently impedes the ability of microorganisms to perform this remediation. Polyvinylalginate (PVA) shows promise as a useful shield for microorganisms carrying out bioremediation of TCE by surrounding them in a protective biofilm-like layer, however, key information is missing which relates diffusion of TCE or its metabolic products through PVA.
<strong><small><a href=/academia/pva-inbre/>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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<!doctype html><html class=no-js lang=en><head><meta charset=utf-8><meta http-equiv=x-ua-compatible content="ie=edge"><meta name=viewport content="width=device-width,initial-scale=1"><title>Tyler Doerksen - MillironX</title><link href="/styles/mix-twbs.min.css" rel=stylesheet></head><body><div class=container-fluid><div class="row wrapper min-vh-100 flex-column flex-sm-row"><aside class="col-12 col-md-3 p-0 bg-dark flex-shrink-1"><nav class="navbar navbar-expand-md navbar-dark bg-dark align-items-start flex-md-column flex-row"><div class=container-fluid><a class="navbar-brand d-block d-md-none" href=#><object class="d-inline-block align-text-top" width=80 height=24 style=filter:invert(100%) data=/graphics/millironx.svg>
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&emsp; Milliron X</h1></header></div><div class=blurred-container><div class=motto><h1 id=motto>Tyler Doerksen</h1></div><div class=img-src style=background-image:url(/images/saddles.jpg)></div><div class="img-src blur" style=background-image:url(/images/saddles_hu1143faa57f5b1acd11a97eda612b56ee_388130_filter_6742909828560968691.jpg)></div></div><br><section class="container-fluid list-main"><div class="container px-5"></div><div class=row data-masonry='{"percentPosition": true}'><div class="col-xl-6 mb-4"><div class=card><div class=category-button><a href=/categories/paper/ class="btn btn-dark btn-sm" data-bs-toggle=tooltip title=Paper><i class="fad fa-book fa-fw"></i></a></div><div class=card-body><a href=https://doi.org/10.1016/j.vetmic.2022.109447><h3 class=card-title>Assessment of Porcine Rotavirus-associated virome variations in pigs with enteric disease</h3></a><div>27 Apr 2022</div><a href=/people/tyler-doerksen/ class="icon-link card-link"><i class="fad fa-user"></i> Tyler Doerksen</a>
<a href=/people/thomas-a.-christensen-ii/ class="icon-link card-link
fw-bolder"><i class="fad fa-user"></i> Thomas A. Christensen II</a>
<a href=/people/andrea-lu/ class="icon-link card-link"><i class="fad fa-user"></i> Andrea Lu</a>
<a href=/people/lance-noll/ class="icon-link card-link"><i class="fad fa-user"></i> Lance Noll</a>
<a href=/people/jianfa-bai/ class="icon-link card-link"><i class="fad fa-user"></i> Jianfa Bai</a>
<a href=/people/jamie-henningson/ class="icon-link card-link"><i class="fad fa-user"></i> Jamie Henningson</a>
<a href=/people/rachel-palinski/ class="icon-link card-link"><i class="fad fa-user"></i> Rachel Palinski</a><p class=card-text>Enteric disease is the predominant cause of morbidity and mortality in young mammals including pigs. Viral species involved in porcine enteric disease complex (PEDC) include rotaviruses, coronaviruses, picornaviruses, astroviruses and pestiviruses among others. The virome of three groups of swine samples submitted to the Kansas State University Veterinary Diagnostic Laboratory for routine testing were assessed, namely, a Rotavirus A positive (RVA) group, a Rotavirus co-infection (RV) group and a Rotavirus Negative (RV Neg) group.
<strong><small><a href=https://doi.org/10.1016/j.vetmic.2022.109447>Read&nbsp;more &#187;</a></small></strong></p></div><div class=card-footer><a href=/tags/porcine-rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine rotavirus</a>
<a href=/tags/porcine-enteric-disease/ class="icon-link card-link"><i class="fad fa-tag"></i> porcine enteric disease</a>
<a href=/tags/virome/ class="icon-link card-link"><i class="fad fa-tag"></i> virome</a>
<a href=/tags/rotavirus/ class="icon-link card-link"><i class="fad fa-tag"></i> rotavirus</a></div></div></div></div></section><footer class=fixed-bottom><div class="container-fluid footer-contents"><div class="row justify-content-between"><div class="col-3 align-self-center"><img src=/graphics/brandedbull.min.svg height=95rem></div><div class="col-3 align-self-center"><div class="btn-group float-end" role=group aria-label="Other Milliron X sites"><a class="btn btn-outline-primary btn-sm" href=https://video.millironx.com/ data-bs-toggle=tooltip title="Video (Peertube)"><i class="fax fa-peertube fa-fw"></i></a>
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