James A. Fellows Yates
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b3e602dcb3
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Merge branch 'dev' into replace-exit-with-error
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1 year ago |
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James A. Fellows Yates
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0245c4880b
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Merge branch 'dev' into final-reads-saving
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1 year ago |
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James A. Fellows Yates
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105bac7bb9
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Apply suggestions from code review
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1 year ago |
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James A. Fellows Yates
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ee031ebf91
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Apply suggestions from code review
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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1 year ago |
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Sofia Stamouli
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255b492b44
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Merge pull request #274 from sofstam/samtools_fastq
Subsitute samtools/bam2fq with samtools/fastq
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1 year ago |
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James Fellows Yates
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3f34603c00
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Prettier
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1 year ago |
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James Fellows Yates
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ce97a1124e
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Add final documentation
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1 year ago |
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James Fellows Yates
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94e88d788d
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Everywhere account when no-runmerging for single libs
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1 year ago |
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sofstam
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c47b9e55fa
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Mix reads in emit
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1 year ago |
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James Fellows Yates
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e5e0aab59d
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More tweaks
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1 year ago |
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James Fellows Yates
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ca9c0cf8fd
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Further fixes
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1 year ago |
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James A. Fellows Yates
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5eee462b5a
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Update LICENSE
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1 year ago |
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James A. Fellows Yates
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59f8d75e9e
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update CHAGENLGO
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1 year ago |
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James A. Fellows Yates
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03c3169f10
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Replace all instance of exit 1 with error for safety and consistency
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1 year ago |
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James A. Fellows Yates
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1eeeb8a214
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Reduce authors to main + other contributors
Due to tower limitation producing ugly warning
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1 year ago |
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sofstam
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d6b60643d9
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Prettier
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1 year ago |
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sofstam
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021f5f0a22
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Remove samtools/bam2fq module
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1 year ago |
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sofstam
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8745fc625c
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Correct output file from samtools/fastq
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1 year ago |
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sofstam
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e274823f73
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Add conf for samtools/fastq
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1 year ago |
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sofstam
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a3d077fcbc
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Prettier
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1 year ago |
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James Fellows Yates
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6895e45768
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Fix a few conditional bugs and related
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1 year ago |
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sofstam
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85905127b8
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Update changelog
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1 year ago |
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sofstam
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102d53bd75
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Subsitute samtools/bam2fq with samtools/fastq
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1 year ago |
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James Fellows Yates
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3b90064ba4
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Start adding conditions in modules.conf - non-cat not working
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1 year ago |
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Sofia Stamouli
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58795264e4
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Merge pull request #271 from nf-core/prototaxites-docs-updates
Standardised taxon table and mOTU database docs improvement
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1 year ago |
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Sofia Stamouli
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e0b112cdce
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Merge branch 'dev' into prototaxites-docs-updates
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1 year ago |
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James A. Fellows Yates
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8deb32da72
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Merge pull request #270 from nf-core/index-warn-fix
Fix broken check for host read removal index
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1 year ago |
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James Fellows Yates
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74bc6b7dd3
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Logical ordering and improved commenting
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1 year ago |
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James Fellows Yates
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68d131af34
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Remove leftover dump
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1 year ago |
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James Fellows Yates
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f9af0040bf
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Add multi-run meta information
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1 year ago |
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James Fellows Yates
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b0939c3ae9
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Standardised taxon table and mOTU database docs improvement
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1 year ago |
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James Fellows Yates
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fbecfb6f33
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Fix broken check for host read removal index
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1 year ago |
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James A. Fellows Yates
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af61e007b3
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Merge pull request #269 from nf-core/reduce-full-test-output
Deactivate saving of reads and other large files for full tests
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1 year ago |
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James A. Fellows Yates
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142ff2f099
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Apply suggestions from code review
|
1 year ago |
|
James Fellows Yates
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577d270423
|
Deactivate saving of reads and other large files for full tests
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1 year ago |
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James A. Fellows Yates
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66a98c2bc8
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Merge pull request #265 from genomic-medicine-sweden/dev
Update changelog after release
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1 year ago |
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sofstam
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1347f27c11
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Update changelog after release
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1 year ago |
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James A. Fellows Yates
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c3f1adf09b
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First release Zenodo update
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1 year ago |
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James A. Fellows Yates
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68a893c449
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Merge pull request #251 from nf-core/dev
Release PR for 1.0.0 (Dodgy Dachshund)
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1 year ago |
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James A. Fellows Yates
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eaef6ac9bc
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Apply suggestions from code review
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1 year ago |
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Sofia Stamouli
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ae3ee470ee
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Merge pull request #264 from sofstam/update_taxpasta_version
Updata taxpasta 0.2.3
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1 year ago |
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Sofia Stamouli
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0007c99d1c
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Merge branch 'dev' into update_taxpasta_version
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1 year ago |
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sofstam
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8ecb655952
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Prettier
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1 year ago |
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sofstam
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213f4e4f23
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Updata taxpasta
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1 year ago |
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James A. Fellows Yates
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3c4ee927e3
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Merge pull request #263 from nf-core/docs-updates
Update docs based on feedback and add missing results directories
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1 year ago |
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James A. Fellows Yates
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9550c76c25
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Update README.md
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1 year ago |
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James A. Fellows Yates
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7f6e162e1c
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Update docs/output.md
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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1 year ago |
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James A. Fellows Yates
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6266ee782d
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Update README.md
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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1 year ago |
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James Fellows Yates
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95f9bf1fa9
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Update credits section
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1 year ago |
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James Fellows Yates
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e49668005f
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Update docs based on feedback and add missing results directories
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1 year ago |