Moritz E. Beber
|
efa398edab
|
Merge pull request #258 from nf-core/clone-maps
refactor: double check maps and validation
|
1 year ago |
|
James A. Fellows Yates
|
5e400c8c89
|
Apply suggestions from code review
|
1 year ago |
|
Moritz E. Beber
|
bb7323e25d
|
fix: restore setting id on FASTQ meta
|
1 year ago |
|
Moritz E. Beber
|
7104b12e3b
|
Update subworkflows/local/longread_preprocessing.nf
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
|
1 year ago |
|
Moritz E. Beber
|
fa1c779536
|
fix: insert `id` key again
|
1 year ago |
|
Moritz E. Beber
|
246da8a7b0
|
chore: remove fixme comments
|
1 year ago |
|
Moritz E. Beber
|
7c1133efb8
|
add more comments and slight style changes
|
1 year ago |
|
Moritz E. Beber
|
5380bc18ec
|
fix: channels should match 1:1 without remaining elements
|
1 year ago |
|
Moritz E. Beber
|
07db3c93e2
|
style: use map addition instead of cloning
|
1 year ago |
|
Moritz E. Beber
|
d17dce5590
|
style: use subMap and early returns
|
1 year ago |
|
Moritz E. Beber
|
0bcea6c993
|
style: use parameter for branch closure
|
1 year ago |
|
Moritz E. Beber
|
b90433f3c2
|
style: use parameters for filter closure
|
1 year ago |
|
Moritz E. Beber
|
aa2410a871
|
style: use named parameters for closure
|
1 year ago |
|
Moritz E. Beber
|
c2ad421051
|
refactor: simplify DB validation
|
1 year ago |
|
Sofia Stamouli
|
53db964bcf
|
Merge pull request #260 from alexhbnr/spelling_mistake_README
Update README.md
|
1 year ago |
|
Alex Hübner
|
f92a405554
|
Update README.md
|
1 year ago |
|
James A. Fellows Yates
|
c1c4180769
|
Merge pull request #256 from nf-core/reduce-tests
Reduce number of tests to check just each tool option is tested
|
1 year ago |
|
James A. Fellows Yates
|
a77517af0d
|
Merge pull request #255 from nf-core/config-ordering
Minor clean ups from second release review
|
1 year ago |
|
James Fellows Yates
|
f3ac1d2a21
|
Update License to match nextflow.conifg [skip ci]
|
1 year ago |
|
James A. Fellows Yates
|
6dbeb5913a
|
Remove left over skips
|
1 year ago |
|
James A. Fellows Yates
|
54e8857233
|
Reduce number of tests to check just each tool option is tested
|
1 year ago |
|
James Fellows Yates
|
98bc6910d5
|
Update authors and remove left over comment
|
1 year ago |
|
James Fellows Yates
|
5c8e2b492c
|
Syncronise local modules with other generic container modules
|
1 year ago |
|
James A. Fellows Yates
|
91a7a03f48
|
Apply suggestions from code review
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
|
1 year ago |
|
James Fellows Yates
|
e92196cd12
|
Remove left over comment
|
1 year ago |
|
James Fellows Yates
|
8ca9fad3b1
|
move errorStrategy to config
|
1 year ago |
|
James Fellows Yates
|
b5a2983c5f
|
Make modules entries consistent
|
1 year ago |
|
Sofia Stamouli
|
d647e61a2f
|
Merge pull request #253 from nf-core/futher-further-prerelease-updates
Futher further prerelease updates: FALCO display in MultiQC
|
1 year ago |
|
James Fellows Yates
|
2d9dede6d4
|
Improve python regex
|
1 year ago |
|
James Fellows Yates
|
6e64c2b5a9
|
Fix copy paste error
|
1 year ago |
|
James Fellows Yates
|
735212c9ee
|
Fix the non-updated KAIJU2TABLE name
|
1 year ago |
|
James Fellows Yates
|
a2a1b9cbf0
|
Phrasing tweak
|
1 year ago |
|
James Fellows Yates
|
4938549d65
|
Clarify some documentation
|
1 year ago |
|
James Fellows Yates
|
9ed384e0f2
|
Collapse FALCO and FASTQC sections, move FALCO/FASTQC sections together
|
1 year ago |
|
James Fellows Yates
|
1f1c63bb51
|
Start fixing FastQC/Falco display in MultiQC
|
1 year ago |
|
James Fellows Yates
|
a5138ed6e0
|
Fix ugly warn when KAIJU2TABLE not run
|
1 year ago |
|
James A. Fellows Yates
|
f0f89eb082
|
Apply suggestions from code review
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
|
1 year ago |
|
James A. Fellows Yates
|
c66c67524c
|
Update nextflow.config
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
|
1 year ago |
|
James A. Fellows Yates
|
799a44cb8c
|
Merge pull request #252 from nf-core/further-prerelease-changes
Further prerelease changes
|
1 year ago |
|
James Fellows Yates
|
6d9cdd3c78
|
And the other file
|
1 year ago |
|
James Fellows Yates
|
5feebf8d69
|
Fix linting issues
|
1 year ago |
|
James Fellows Yates
|
74a5343524
|
Add taxpasta to tubemap
|
1 year ago |
|
James A. Fellows Yates
|
6c2ce4a1c9
|
Apply suggestions from code review
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
|
1 year ago |
|
James A. Fellows Yates
|
0c9d6cabe8
|
Merge pull request #250 from nf-core/pre-release-updates
Cleanup PR for release
|
1 year ago |
|
James Fellows Yates
|
ec89187504
|
Update CHANGELOG for first release
|
1 year ago |
|
James Fellows Yates
|
aedf0b34de
|
Bump version for release
|
1 year ago |
|
James Fellows Yates
|
5c549e5ce3
|
Remove TODOs and references to under development
|
1 year ago |
|
James Fellows Yates
|
a14937f668
|
Remove unused module and fix module structure for samplesheet_check
|
1 year ago |
|
Sofia Stamouli
|
d9f687667e
|
Merge pull request #249 from genomic-medicine-sweden/update_taxpasta
Update taxpasta
|
1 year ago |
|
sofstam
|
7ae7fb528b
|
Prettier
|
1 year ago |