sofstam
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58f09ed659
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Update taxpasta/merge module
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1 year ago |
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Sofia Stamouli
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b93c7082b8
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Merge pull request #248 from genomic-medicine-sweden/update_taxpasta_merge
Update taxpasta/merge to version 0.2.0 and add taxonomy argument
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1 year ago |
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Sofia Stamouli
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df5303270d
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Update nextflow_schema.json
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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Sofia Stamouli
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fff7453d0c
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Update nextflow_schema.json
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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Sofia Stamouli
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9621d34c4a
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Update nextflow_schema.json
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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Sofia Stamouli
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54af021965
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Update nextflow_schema.json
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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sofstam
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99fe8adb1b
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Add helptext
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1 year ago |
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sofstam
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c94bfb0cf1
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Fix prettier
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1 year ago |
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sofstam
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4dea308c22
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Linting
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1 year ago |
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Sofia Stamouli
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69430ef851
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Update nextflow.config
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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Sofia Stamouli
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e3e465df1f
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Update nextflow_schema.json
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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Sofia Stamouli
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d454ceed86
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Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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Sofia Stamouli
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1aef73cda8
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Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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Sofia Stamouli
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d96e0a17a5
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Update conf/modules.config
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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1 year ago |
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sofstam
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489650feb8
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Linting
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1 year ago |
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sofstam
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2f0c68a833
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Last review suggestions
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1 year ago |
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sofstam
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78d7001bea
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Document the taxonomy parameters
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1 year ago |
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sofstam
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a7ae57c94e
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Fix linting
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1 year ago |
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sofstam
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e18e68faa5
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Apply review suggestion
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1 year ago |
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sofstam
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5dc3cbc278
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Rename taxonomy argument
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1 year ago |
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sofstam
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5a6fcf1f42
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Update taxpasta/merge to version 0.2.0 and add taxonomy argument
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1 year ago |
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James A. Fellows Yates
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78c2d275e6
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Merge pull request #245 from nf-core/ku-docs [skip ci]
Fix typo in schema docs [skip ci]
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1 year ago |
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James Fellows Yates
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cd4614f387
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Fix typo in schema docs [skip ci]
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1 year ago |
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James A. Fellows Yates
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91255b4d2d
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Merge pull request #244 from nf-core/taxpasta-ku-fix
Fix KrakenUniq Taxpasta issue
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1 year ago |
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James A. Fellows Yates
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32c0d8d6a5
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Fix KrakenUniq Taxpasta issue
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1 year ago |
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James A. Fellows Yates
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877f6ca8b3
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Merge pull request #243 from nf-core/rma2info-label-fix
Fix label base.config for MEGAN_RMA2INFO
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1 year ago |
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James A. Fellows Yates
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3d1659dac7
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Merge pull request #242 from genomic-medicine-sweden/minor_fixes
Remove standardised_tables
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1 year ago |
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James A. Fellows Yates
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9847b8d9a7
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Fix label base.config for MEGAN_RMA2INFO
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1 year ago |
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sofstam
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90aa7551a9
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Fix the motus_versions
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1 year ago |
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sofstam
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3fa1b0c17d
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Remove standardised_tables
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1 year ago |
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Sofia Stamouli
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599c8d3592
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Merge pull request #241 from genomic-medicine-sweden/add_taxpasta_merge
Add taxpasta_merge to taxprofiler
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1 year ago |
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sofstam
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04bc978ef6
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Remove taxonomy parameter from taxpasta
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1 year ago |
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sofstam
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211b5f3a68
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Apply review suggestions
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1 year ago |
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sofstam
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90a5668007
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run_malt false in test and add text in output.md
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1 year ago |
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sofstam
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f0aa89cb87
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Rename taxpasta parameters and remove samplesheet parameter
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1 year ago |
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sofstam
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604df56fdb
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Add a description about the files used by taxpasta
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1 year ago |
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sofstam
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08bfa6a1a7
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Apply review suggestions for docs
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1 year ago |
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sofstam
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5ebc22dd29
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Add icon in nextflow_schema.json
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1 year ago |
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sofstam
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27b7171b96
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Apply review suggestions
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1 year ago |
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sofstam
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c9b521234b
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Prettier for docs
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1 year ago |
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sofstam
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dad64a688d
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Add documentation for taxpasta module
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1 year ago |
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sofstam
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25d44c955e
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Merge dev into add_taxpasta_merge
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1 year ago |
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sofstam
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2456038567
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Merge branch 'dev' into add_taxpasta_merge
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1 year ago |
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James A. Fellows Yates
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bb3c49389f
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Merge pull request #240 from nf-core/move-kaiju2table
Move kaiju2table to profiling
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1 year ago |
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sofstam
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de6a4214ef
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Add taxpasta_merge to taxprofiler
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1 year ago |
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James Fellows Yates
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7dfcdd015b
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Re-add the 'native' combined kaiju output
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1 year ago |
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James A. Fellows Yates
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4e818efe6d
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Update docs/output.md
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
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1 year ago |
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James Fellows Yates
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79b4db9a34
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Move kaiju2table to profiling
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1 year ago |
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James A. Fellows Yates
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21d9135b14
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Merge pull request #238 from nf-core/process-optmisations
Resource optimisation
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1 year ago |
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James Fellows Yates
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ce1118930d
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Resource optimisation
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1 year ago |