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41 commits

Author SHA1 Message Date
James Fellows Yates
059cd17114 Fix exporting of mapped/unmapped reads for consistency across both short and long reads 2023-02-07 11:43:40 +01:00
sofstam
4123e06981 Apply last review suggestions 2023-02-03 15:54:29 +01:00
sofstam
3e2b181182 Apply review suggestions 2023-02-03 15:42:45 +01:00
sofstam
5363274867 Add some last documentation 2023-02-02 13:58:48 +01:00
James Fellows Yates
932dc12fb1 Add list of expected tools in MultiQC report [skip ci] 2023-01-31 13:09:53 +01:00
James Fellows Yates
52907dcc26 Prettier 2023-01-31 13:07:07 +01:00
James A. Fellows Yates
b4d01ac226
Formatting tweaks 2023-01-31 10:23:36 +01:00
sofstam
5b738ad353 Review + prettier 2023-01-31 09:35:40 +01:00
sofstam
0edef9ea57 Review suggestions + prettier 2023-01-30 11:16:18 +01:00
sofstam
bc2876228c Apply review suggestions 2023-01-25 15:11:43 +01:00
sofstam
4f8ac72e1f Add description of each tool 2023-01-25 13:25:33 +01:00
Sofia Stamouli
4dcf8c0b02 Prettier 2023-01-17 15:50:10 +01:00
sofstam
024b683671 Update output and usage 2023-01-17 15:38:56 +01:00
Sofia Stamouli
06575b537d
Update docs/output.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2023-01-16 12:59:23 +01:00
Sofia Stamouli
0e3f9f0b9a
Update docs/output.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2023-01-16 12:59:13 +01:00
sofstam
9f21181972 Add documentation for output docs 2023-01-12 15:47:29 +01:00
Sofia Stamouli
33bce738f5
Update docs/output.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2023-01-11 16:50:06 +01:00
Sofia Stamouli
a49a907ad1
Update docs/output.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2023-01-11 16:47:44 +01:00
Sofia Stamouli
953f9585c9
Update docs/output.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2023-01-11 16:47:18 +01:00
Sofia Stamouli
719fc3cf5d
Update docs/output.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2023-01-11 16:46:30 +01:00
Sofia Stamouli
18c15f8a78
Update docs/output.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-12-20 20:23:38 +01:00
Sofia Stamouli
fb9de1e212
Update docs/output.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-12-20 20:23:32 +01:00
Sofia Stamouli
8404c28d08
Review suggestion 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-12-20 20:23:26 +01:00
Sofia Stamouli
2e08c873a0
Apply review suggestion 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-12-20 17:34:19 +01:00
Sofia Stamouli
0cbd0a8013
Apply review suggestion 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-12-20 17:33:35 +01:00
Sofia Stamouli
af7468522a
Apply review suggestion 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-12-20 17:33:18 +01:00
Sofia Stamouli
964771c5f2
Update docs/output.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-12-20 17:33:04 +01:00
Sofia Stamouli
3c33ba66ca
Apply review suggestion 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-12-20 17:32:13 +01:00
Sofia Stamouli
af8fd18d97
Update docs/output.md 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-12-20 15:44:35 +01:00
Sofia Stamouli
b0a6bdee5a
Apply review suggestion 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-12-20 15:43:45 +01:00
Sofia Stamouli
c6710db7a9
Apply review suggestion 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-12-20 15:42:41 +01:00
Sofia Stamouli
d7c4554b18
Apply review suggestion 
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
 2022-12-20 15:42:10 +01:00
Sofia Stamouli
c9e4eba62d Prettier 2022-12-13 11:26:06 +01:00
sofstam
4756dc7f0d Update output.md 2022-12-12 17:14:57 +01:00
sofstam
b1eb477f33 Update output.md 2022-12-12 17:06:05 +01:00
sofstam
c9a6320dac Merge branch 'update_output' of https://github.com/genomic-medicine-sweden/taxprofiler into update_output 
Conflicts:
	docs/output.md
 2022-12-12 09:13:02 +01:00
sofstam
b35d26744d Add classifiers 2022-12-09 17:11:48 +01:00
Sofia Stamouli
6d0b5d0a58 Prettier 2022-12-09 15:38:59 +01:00
sofstam
c5f4c9486a Start the documentation of output.md 2022-12-09 15:30:11 +01:00
nf-core-bot
6b939e6728 Template update for nf-core/tools version 2.3.1 2022-03-23 13:57:56 +00:00
James Fellows Yates
12e7b428f2 initial template build from nf-core/tools, version 2.2 2022-02-18 07:55:14 +01:00