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145 commits

Author SHA1 Message Date
Sofia Stamouli
ffc884b542
Merge branch 'nf-core:dev' into documentation 2023-02-03 15:22:51 +01:00
James A. Fellows Yates
b4f88a29ce
Update docs/usage.md [skip ci] 2023-02-03 09:46:01 +01:00
James A. Fellows Yates
11a8624b39
Add warning about database parameters [skip ci] 2023-02-03 09:42:20 +01:00
sofstam
5363274867 Add some last documentation 2023-02-02 13:58:48 +01:00
James Fellows Yates
932dc12fb1 Add list of expected tools in MultiQC report [skip ci] 2023-01-31 13:09:53 +01:00
James Fellows Yates
52907dcc26 Prettier 2023-01-31 13:07:07 +01:00
James A. Fellows Yates
b4d01ac226
Formatting tweaks 2023-01-31 10:23:36 +01:00
sofstam
366745bdbe Prettier in usage 2023-01-31 09:38:43 +01:00
sofstam
5b738ad353 Review + prettier 2023-01-31 09:35:40 +01:00
sofstam
0edef9ea57 Review suggestions + prettier 2023-01-30 11:16:18 +01:00
sofstam
bc2876228c Apply review suggestions 2023-01-25 15:11:43 +01:00
sofstam
4f8ac72e1f Add description of each tool 2023-01-25 13:25:33 +01:00
Sofia Stamouli
5d12785ca4
Merge branch 'nf-core:dev' into update_output 2023-01-25 09:47:30 +01:00
James A. Fellows Yates
9cf2d8763f
[skip ci] Update docs/usage.md
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
2023-01-24 11:50:58 +01:00
James Fellows Yates
085d9e519c [skip ci] add comment about recommendation to split SR/LR 2023-01-24 11:39:37 +01:00
Sofia Stamouli
7d4035d4c7
Add new line in the description of custom file 2023-01-19 13:44:10 +01:00
James A. Fellows Yates
36629b3dde
Merge branch 'dev' into post-usage-draft-tweaks 2023-01-19 10:36:59 +01:00
James A. Fellows Yates
6e43695264
Apply suggestions from code review
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
2023-01-19 08:55:23 +01:00
James A. Fellows Yates
6d380fbbff
Apply suggestions from code review
Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com>
2023-01-19 08:49:55 +01:00
Sofia Stamouli
4dcf8c0b02 Prettier 2023-01-17 15:50:10 +01:00
sofstam
024b683671 Update output and usage 2023-01-17 15:38:56 +01:00
James Fellows Yates
33d4a84237 Add explicit sentnece about classification/profiling 2023-01-17 15:23:59 +01:00
nf-core-bot
11400b016c [automated] Fix linting with Prettier 2023-01-16 14:11:18 +00:00
James A. Fellows Yates
b34a021db7
Specify the difference between classification/profiling 2023-01-16 14:43:46 +01:00
Sofia Stamouli
06575b537d
Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2023-01-16 12:59:23 +01:00
Sofia Stamouli
0e3f9f0b9a
Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2023-01-16 12:59:13 +01:00
sofstam
9f21181972 Add documentation for output docs 2023-01-12 15:47:29 +01:00
Sofia Stamouli
3b6be07623
Merge branch 'nf-core:dev' into update_output 2023-01-11 16:56:18 +01:00
Sofia Stamouli
33bce738f5
Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2023-01-11 16:50:06 +01:00
Sofia Stamouli
a49a907ad1
Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2023-01-11 16:47:44 +01:00
Sofia Stamouli
953f9585c9
Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2023-01-11 16:47:18 +01:00
Sofia Stamouli
719fc3cf5d
Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2023-01-11 16:46:30 +01:00
James Fellows Yates
ab0c62bdc1 Post-release tweaks to usage.md 2022-12-23 16:23:29 +01:00
Sofia Stamouli
ec9c7cfedc Prettier 2022-12-22 11:10:54 +01:00
Sofia Stamouli
2f291731c1
Merge branch 'nf-core:dev' into update_usage 2022-12-22 11:09:50 +01:00
Sofia Stamouli
1eeb3b337a
Update usage.md 2022-12-22 11:07:09 +01:00
Sofia Stamouli
29978d83b9
Update centrifuge section 2022-12-22 11:03:49 +01:00
Sofia Stamouli
d6e0d404e3
Update docs/usage.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-12-22 09:18:00 +01:00
Sofia Stamouli
ba43b0daa4
Update docs/usage.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-12-21 09:26:38 +01:00
Sofia Stamouli
18c15f8a78
Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-12-20 20:23:38 +01:00
Sofia Stamouli
fb9de1e212
Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-12-20 20:23:32 +01:00
Sofia Stamouli
8404c28d08
Review suggestion
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-12-20 20:23:26 +01:00
Sofia Stamouli
2e08c873a0
Apply review suggestion
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-12-20 17:34:19 +01:00
Sofia Stamouli
0cbd0a8013
Apply review suggestion
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-12-20 17:33:35 +01:00
Sofia Stamouli
af7468522a
Apply review suggestion
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-12-20 17:33:18 +01:00
Sofia Stamouli
964771c5f2
Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-12-20 17:33:04 +01:00
Sofia Stamouli
3c33ba66ca
Apply review suggestion
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-12-20 17:32:13 +01:00
Sofia Stamouli
af8fd18d97
Update docs/output.md
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-12-20 15:44:35 +01:00
Sofia Stamouli
b0a6bdee5a
Apply review suggestion
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-12-20 15:43:45 +01:00
Sofia Stamouli
c6710db7a9
Apply review suggestion
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-12-20 15:42:41 +01:00