docker-BioJulia/Manifest.toml

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# This file is machine-generated - editing it directly is not advised
[[ADTypes]]
git-tree-sha1 = "016833eb52ba2d6bea9fcb50ca295980e728ee24"
uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b"
version = "0.2.7"
[[AbstractFFTs]]
deps = ["ChainRulesCore", "LinearAlgebra", "Test"]
git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef"
uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c"
version = "1.5.0"
[[AbstractTrees]]
git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177"
uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
version = "0.4.5"
[[Accessors]]
deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown", "Requires", "Test"]
git-tree-sha1 = "c0d491ef0b135fd7d63cbc6404286bc633329425"
uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697"
version = "0.1.36"
[[Adapt]]
deps = ["LinearAlgebra", "Requires"]
git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608"
uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
version = "3.7.2"
[[AliasTables]]
deps = ["Random"]
git-tree-sha1 = "07591db28451b3e45f4c0088a2d5e986ae5aa92d"
uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8"
version = "1.1.1"
[[ArgParse]]
deps = ["Logging", "TextWrap"]
git-tree-sha1 = "d4eccacaa3a632e8717556479d45502af44b4c17"
uuid = "c7e460c6-2fb9-53a9-8c5b-16f535851c63"
version = "1.1.5"
[[ArgTools]]
uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
[[ArnoldiMethod]]
deps = ["LinearAlgebra", "Random", "StaticArrays"]
git-tree-sha1 = "f87e559f87a45bece9c9ed97458d3afe98b1ebb9"
uuid = "ec485272-7323-5ecc-a04f-4719b315124d"
version = "0.1.0"
[[Arpack]]
deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"]
2022-11-19 21:32:40 +00:00
git-tree-sha1 = "9b9b347613394885fd1c8c7729bfc60528faa436"
uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97"
2022-11-19 21:32:40 +00:00
version = "0.5.4"
[[Arpack_jll]]
deps = ["Libdl", "OpenBLAS_jll", "Pkg"]
git-tree-sha1 = "e214a9b9bd1b4e1b4f15b22c0994862b66af7ff7"
uuid = "68821587-b530-5797-8361-c406ea357684"
version = "3.5.0+3"
[[ArrayInterface]]
deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0"
uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
version = "7.5.1"
[[ArrayLayouts]]
deps = ["FillArrays", "LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "33207a8be6267bc389d0701e97a9bce6a4de68eb"
uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
version = "1.9.2"
[[Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
[[AssetRegistry]]
deps = ["Distributed", "JSON", "Pidfile", "SHA", "Test"]
git-tree-sha1 = "b25e88db7944f98789130d7b503276bc34bc098e"
uuid = "bf4720bc-e11a-5d0c-854e-bdca1663c893"
version = "0.1.0"
[[AutoHashEquals]]
deps = ["Pkg"]
git-tree-sha1 = "7fc4d1532a3df01af51bae5c1d20389f5aeea086"
uuid = "15f4f7f2-30c1-5605-9d31-71845cf9641f"
version = "1.0.0"
[[Automa]]
deps = ["TranscodingStreams"]
git-tree-sha1 = "ef9997b3d5547c48b41c7bd8899e812a917b409d"
uuid = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b"
version = "0.8.4"
[[AxisAlgorithms]]
deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"]
git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712"
uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950"
version = "1.1.0"
[[AxisArrays]]
deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"]
git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f"
uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9"
version = "0.4.7"
[[BBI]]
deps = ["BioCore", "Libz"]
git-tree-sha1 = "1dc447cec8b0e52d307a1bdd398c9dcd4aeba0e2"
uuid = "19670fab-07f0-5a41-99c5-c090d774ee27"
version = "0.2.1"
[[BED]]
deps = ["Automa", "BGZFStreams", "BioGenerics", "ColorTypes", "FixedPointNumbers", "GenomicFeatures", "Indexes", "TranscodingStreams"]
git-tree-sha1 = "d2bdf452eecd746da47a3ef85804f659396e09ef"
uuid = "8e4a8c10-cb6b-11e8-08d2-83478d609d67"
version = "0.3.0"
[[BGZFStreams]]
deps = ["CodecZlib"]
git-tree-sha1 = "3aca54d25f8c30056577aa37ea68184da68df685"
uuid = "28d598bf-9b8f-59f1-b38c-5a06b4a0f5e6"
version = "0.3.2"
[[BandedMatrices]]
deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools", "SparseArrays"]
git-tree-sha1 = "0b816941273b5b162be122a6c94d706e3b3125ca"
uuid = "aae01518-5342-5314-be14-df237901396f"
version = "0.17.38"
[[Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
[[BenchmarkTools]]
deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"]
git-tree-sha1 = "f1dff6729bc61f4d49e140da1af55dcd1ac97b2f"
uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
version = "1.5.0"
[[BigWig]]
deps = ["BBI", "BioCore", "BufferedStreams", "GenomicFeatures", "Libz"]
git-tree-sha1 = "b83f8ab279139bdd68b593bee5862fdb0b855b98"
uuid = "9d649c22-cb6b-11e8-1fa9-f3896fced444"
version = "0.1.0"
[[BinaryProvider]]
deps = ["Libdl", "Logging", "SHA"]
git-tree-sha1 = "ecdec412a9abc8db54c0efc5548c64dfce072058"
uuid = "b99e7846-7c00-51b0-8f62-c81ae34c0232"
version = "0.5.10"
[[BioAlignments]]
deps = ["BioGenerics", "BioSequences", "BioSymbols", "IntervalTrees", "LinearAlgebra"]
git-tree-sha1 = "6a0c6a01af5bfdbbcb7679c51026da0fc7304d6e"
uuid = "00701ae9-d1dc-5365-b64a-a3a3ebf5695e"
version = "3.1.0"
[[BioCore]]
deps = ["Automa", "BufferedStreams", "YAML"]
git-tree-sha1 = "476edbf4ef94594fff430a84ca96f86cb2327a71"
uuid = "37cfa864-2cd6-5c12-ad9e-b6597d696c81"
version = "2.0.5"
[[BioGenerics]]
deps = ["TranscodingStreams"]
git-tree-sha1 = "7bbc085aebc6faa615740b63756e4986c9e85a70"
uuid = "47718e42-2ac5-11e9-14af-e5595289c2ea"
version = "0.1.4"
[[BioSequences]]
deps = ["BioSymbols", "PrecompileTools", "Random", "Twiddle"]
git-tree-sha1 = "6fdba8b4279460fef5674e9aa2dac7ef5be361d5"
uuid = "7e6ae17a-c86d-528c-b3b9-7f778a29fe59"
version = "3.1.6"
[[BioServices]]
deps = ["Dates", "Gumbo", "HTTP", "JSON", "XMLDict"]
git-tree-sha1 = "d27a44c3d3d6f56742f18b236bfb7c517c586547"
uuid = "a0d4ced5-b29c-5395-b614-ca030a679c4b"
version = "0.4.1"
[[BioSymbols]]
deps = ["PrecompileTools"]
git-tree-sha1 = "e32a61f028b823a172c75e26865637249bb30dff"
uuid = "3c28c6f8-a34d-59c4-9654-267d177fcfa9"
version = "5.1.3"
[[BitTwiddlingConvenienceFunctions]]
deps = ["Static"]
2022-11-19 21:32:40 +00:00
git-tree-sha1 = "0c5f81f47bbbcf4aea7b2959135713459170798b"
uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b"
2022-11-19 21:32:40 +00:00
version = "0.1.5"
[[BoundaryValueDiffEq]]
deps = ["ArrayInterface", "BandedMatrices", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "NonlinearSolve", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "TruncatedStacktraces", "UnPack"]
git-tree-sha1 = "f7392ce20e6dafa8fee406142b1764de7d7cd911"
uuid = "764a87c0-6b3e-53db-9096-fe964310641d"
version = "4.0.1"
[[BufferedStreams]]
git-tree-sha1 = "4ae47f9a4b1dc19897d3743ff13685925c5202ec"
uuid = "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d"
version = "1.2.1"
[[BusinessDays]]
deps = ["Dates"]
git-tree-sha1 = "00e206895eb8d0350149dff15ba1ea9a8f306c63"
uuid = "4f18b42c-503e-5345-9536-bb0f25fc7038"
version = "0.9.24"
[[Bzip2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd"
uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
version = "1.0.8+1"
[[CEnum]]
git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90"
uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82"
version = "0.4.2"
[[CPUSummary]]
deps = ["CpuId", "IfElse", "PrecompileTools", "Static"]
git-tree-sha1 = "601f7e7b3d36f18790e2caf83a882d88e9b71ff1"
uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9"
version = "0.2.4"
[[CSSUtil]]
deps = ["Colors", "JSON", "Markdown", "Measures", "WebIO"]
git-tree-sha1 = "b9fb4b464ec10e860abe251b91d4d049934f7399"
uuid = "70588ee8-6100-5070-97c1-3cb50ed05fe8"
version = "0.1.1"
[[CSV]]
deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"]
git-tree-sha1 = "6c834533dc1fabd820c1db03c839bf97e45a3fab"
uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
version = "0.10.14"
[[Cairo_jll]]
deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"]
git-tree-sha1 = "a4c43f59baa34011e303e76f5c8c91bf58415aaf"
uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a"
version = "1.18.0+1"
[[Calculus]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad"
uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9"
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[[CatIndices]]
deps = ["CustomUnitRanges", "OffsetArrays"]
git-tree-sha1 = "a0f80a09780eed9b1d106a1bf62041c2efc995bc"
uuid = "aafaddc9-749c-510e-ac4f-586e18779b91"
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[[ChainRules]]
deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
git-tree-sha1 = "e7d1016142a71c980309114ee30a3e4f870902f4"
uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
version = "1.65.0"
[[ChainRulesCore]]
deps = ["Compat", "LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b"
uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
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[[ChangesOfVariables]]
deps = ["InverseFunctions", "LinearAlgebra", "Test"]
git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f"
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[[CloseOpenIntervals]]
deps = ["Static", "StaticArrayInterface"]
git-tree-sha1 = "70232f82ffaab9dc52585e0dd043b5e0c6b714f1"
uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9"
version = "0.1.12"
[[Clustering]]
2022-11-19 21:32:40 +00:00
deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"]
git-tree-sha1 = "7ebbd653f74504447f1c33b91cd706a69a1b189f"
uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5"
version = "0.14.4"
[[CodeTracking]]
deps = ["InteractiveUtils", "UUIDs"]
git-tree-sha1 = "c0216e792f518b39b22212127d4a84dc31e4e386"
uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2"
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[[CodecBase]]
deps = ["TranscodingStreams"]
git-tree-sha1 = "1c2f3f3c2c3a024b6697e92e66d6b97815915d54"
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[[CodecBzip2]]
deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"]
git-tree-sha1 = "9b1ca1aa6ce3f71b3d1840c538a8210a043625eb"
uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd"
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[[CodecLz4]]
deps = ["Lz4_jll", "TranscodingStreams"]
git-tree-sha1 = "b8aecef9f90530cf322a8386630ec18485c17991"
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[[CodecXz]]
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[[CodecZlib]]
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git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73"
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[[CodecZstd]]
deps = ["TranscodingStreams", "Zstd_jll"]
git-tree-sha1 = "23373fecba848397b1705f6183188a0c0bc86917"
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[[ColorBrewer]]
deps = ["Colors", "JSON", "Test"]
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[[ColorSchemes]]
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git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129"
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[[ColorTypes]]
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[[ColorVectorSpace]]
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git-tree-sha1 = "600cc5508d66b78aae350f7accdb58763ac18589"
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[[Colors]]
deps = ["ColorTypes", "FixedPointNumbers", "Reexport"]
git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a"
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[[Combinatorics]]
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[[CommonSolve]]
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[[CommonSubexpressions]]
deps = ["MacroTools", "Test"]
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[[Compat]]
deps = ["Dates", "LinearAlgebra", "TOML", "UUIDs"]
git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80"
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[[CompilerSupportLibraries_jll]]
deps = ["Artifacts", "Libdl"]
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[[CompositionsBase]]
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[[ComputationalResources]]
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[[ConcreteStructs]]
git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34"
uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471"
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[[ConstructionBase]]
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[[Contour]]
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[[CoordinateTransformations]]
deps = ["LinearAlgebra", "StaticArrays"]
git-tree-sha1 = "f9d7112bfff8a19a3a4ea4e03a8e6a91fe8456bf"
uuid = "150eb455-5306-5404-9cee-2592286d6298"
version = "0.6.3"
[[CpuId]]
deps = ["Markdown"]
git-tree-sha1 = "32d125af0fb8ec3f8935896122c5e345709909e5"
uuid = "adafc99b-e345-5852-983c-f28acb93d879"
version = "0.3.0"
[[Crayons]]
git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15"
uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
version = "4.1.1"
[[CustomUnitRanges]]
git-tree-sha1 = "1a3f97f907e6dd8983b744d2642651bb162a3f7a"
uuid = "dc8bdbbb-1ca9-579f-8c36-e416f6a65cce"
version = "1.0.2"
[[DSP]]
deps = ["Compat", "FFTW", "IterTools", "LinearAlgebra", "Polynomials", "Random", "Reexport", "SpecialFunctions", "Statistics"]
git-tree-sha1 = "f7f4319567fe769debfcf7f8c03d8da1dd4e2fb0"
uuid = "717857b8-e6f2-59f4-9121-6e50c889abd2"
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[[DataAPI]]
git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe"
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.16.0"
[[DataDeps]]
deps = ["BinaryProvider", "HTTP", "Libdl", "Reexport", "SHA", "p7zip_jll"]
git-tree-sha1 = "e299d8267135ef2f9c941a764006697082c1e7e8"
uuid = "124859b0-ceae-595e-8997-d05f6a7a8dfe"
version = "0.7.8"
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