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Author SHA1 Message Date
phue
014111b925 point travis to local clone 
Previously travis tests could only succeed if the config was already present in the master branch, but for newly added
configs it would always fail.

This commit sets custom_config_base to the local clone of the PR branch on the Travis VM where the file is present.
 2019-09-23 13:42:11 +02:00
phue
5e257e7e9a add cbe profile 2019-09-22 16:45:09 +02:00
Alexander Peltzer
836da97efd
Merge pull request #66 from marchoeppner/ccga-config 
Updating CCGA configs - adding cache dir and mount points
 2019-09-03 17:25:34 +02:00
marchoeppner
3b638e9ccd Fixing typo in ccga_dx config 2019-09-03 15:37:15 +02:00
Szilveszter Juhos
c3c0d088dd
typo 2019-08-16 11:13:32 +02:00
Szilveszter Juhos
e5d8f20204
Merge pull request #65 from MaxUlysse/master 
fix: update and rearrange munin configuration file and docs
 2019-08-16 11:06:32 +02:00
marchoeppner
486cdfce5f Updating CCGA configs - adding cache dir and mount points 2019-08-07 13:19:16 +02:00
MaxUlysse
4183090379 fix: reduce cpu and mem usage 2019-08-07 12:26:51 +02:00
MaxUlysse
23dd3dd098 Merge branch 'master' of github.com:MaxUlysse/nf-core_configs 2019-08-07 11:56:52 +02:00
MaxUlysse
f69524d59a feat: update docs 2019-08-07 11:56:10 +02:00
MaxUlysse
0bd19517b3 fix: typos 2019-08-07 11:55:56 +02:00
Maxime Garcia
d6a763214c
Update conf/munin.config 
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
 2019-08-07 11:47:47 +02:00
Maxime Garcia
12fb2a60c5
Update conf/munin.config 
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
 2019-08-07 11:47:41 +02:00
MaxUlysse
332ba0dadb fix: update and rearrange munin configuration file and docs 2019-08-07 11:10:48 +02:00
Martin Proks
da2a9047b0
fix: added kraken to the list (#64) 2019-08-05 14:59:36 +02:00
Martin Proks
c583aa0233 Added kraken config (#15) 
* Added kraken template
* docs: updated some info
* fix: updated igenomes_base path
 2019-08-05 11:19:05 +02:00
Harshil Patel
5abe8bca35
Merge pull request #60 from drpatelh/master 
Attempt to get travis tests working
 2019-08-01 13:46:44 +01:00
drpatelh
91a5e64e1c Ignore czbiohub_aws 2019-08-01 09:42:50 +01:00
drpatelh
e0c684ee8f Aarrrgh pulling configs from master 2019-07-31 23:39:42 +01:00
drpatelh
a692ded933 Remove workDir in czbiohub 2019-07-31 23:30:51 +01:00
drpatelh
7ee70fb742 Add in uppmax-devel 2019-07-31 22:52:20 +01:00
drpatelh
0326b56038 Add czbiohub back in 2019-07-31 22:48:22 +01:00
drpatelh
eb0e89eeaa Remove SCRATCH variable 2019-07-31 22:44:54 +01:00
drpatelh
f3e61fdd66 Add prince back in 2019-07-31 22:40:43 +01:00
drpatelh
0f6802a7c8 Add hebbe back in 2019-07-31 22:37:11 +01:00
drpatelh
a496bfaeef Remove uppmax_devel 2019-07-31 22:33:49 +01:00
drpatelh
70919d0dd3 Remove more configs 2019-07-31 22:28:03 +01:00
drpatelh
8be2897961 Remove problematic configs 2019-07-31 22:27:37 +01:00
drpatelh
daf1b9dcd2 Fix type in uppmax-devel 2019-07-31 22:09:30 +01:00
drpatelh
840a97ed68 Clean up and alphabetasize 2019-07-31 21:52:16 +01:00
drpatelh
6298f78bf4 .travis.yml 2019-07-31 21:33:47 +01:00
Alexander Peltzer
e29f46eaeb
Merge pull request #58 from rplanel/master 
Add Institut Pasteur config
 2019-07-30 16:50:11 +02:00
Remi Planel
1c0d596582 Merge remote-tracking branch 'upstream/master' 2019-07-30 16:15:20 +02:00
Remi Planel
be28a34839 Updat Pasteur doc 2019-07-30 16:12:30 +02:00
Remi Planel
f9a2baf614 Add link to Pasteur doc 2019-07-30 16:10:33 +02:00
Remi Planel
64e78a3dc1 Update the doc 2019-07-30 15:17:25 +02:00
Remi Planel
6f264ac2ca Add pasteur profile doc 2019-07-30 15:15:30 +02:00
Remi Planel
b4cffe0455 Remove buggy cluster option 2019-07-30 15:15:07 +02:00
Remi Planel
96ea16ddbd Ignore vscode workspace 2019-07-30 15:14:18 +02:00
Harshil Patel
c522408888
Merge pull request #57 from marchoeppner/dev 
Adding CCGA DX cluster config
 2019-07-29 13:13:13 +02:00
marchoeppner
b74f020f14
Update docs/ccga_dx.md 
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
 2019-07-29 12:45:30 +02:00
marchoeppner
7d5de651aa
Update README.md 
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
 2019-07-29 12:45:08 +02:00
marchoeppner
b31db18dfb Adding config file for CCGA dx cluster 2019-07-29 12:08:07 +02:00
marchoeppner
71bc98afae Adding config file for CCGA dx cluster 2019-07-29 12:06:29 +02:00
Remi Planel
fbb33fde63 Details 2019-07-24 11:43:08 +02:00
Remi Planel
1cb132a457 Define a profile for the Pasteur config 2019-07-24 11:32:25 +02:00
Remi Planel
1b30c5a4d2 Add the Pasteur profile 2019-07-24 11:32:02 +02:00
Alexander Peltzer
9106559b2f
Update cfc.config 2019-07-15 17:53:11 +02:00
Olga Botvinnik
c59ca56525
Merge pull request #51 from czbiohub/olgabot/czb-update 
[WIP] CZ Biohub update
 2019-07-09 16:02:33 -07:00
Olga Botvinnik
474e98daaf
Merge branch 'master' into olgabot/czb-update 2019-07-09 16:02:25 -07:00