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Author	SHA1	Message	Date
Alexander Peltzer	85f9b2e661	Merge pull request #55 from marchoeppner/ccga-config ... Updating CCGA config file	2019-07-05 08:52:01 +02:00
marchoeppner	fe0153befd	Updating CCGA documentation	2019-07-05 08:30:02 +02:00
marchoeppner	d66bf4e478	Updating CCGA documentation	2019-07-05 08:28:18 +02:00
marchoeppner	cb507177d5	Updating CCGA config file	2019-07-05 08:03:37 +02:00
Olga Botvinnik	069963ff8a	Make czbiohub_aws_highpriority only set the AWS Batch queue and nothing else	2019-07-03 16:01:47 -07:00
Olga Botvinnik	917ec0863d	add default trimming	2019-07-03 16:01:03 -07:00
Alexander Peltzer	45d36a1506	Update cfc.config ... Add Weblog for CFC cluster	2019-07-03 09:21:16 +02:00
Olga Botvinnik	6a2d2003f0	Add high priority AWS batch queue to CZBiohub AWS	2019-07-01 09:25:46 -07:00
Olga Botvinnik	70b5205d15	Add human salmon index and mouse star index	2019-06-27 15:02:47 -07:00
Olga Botvinnik	d1983f8acd	Use new and improved GENCODE+ERCC annotation	2019-06-26 17:56:26 -07:00
Olga Botvinnik	cfcb533b95	Add czbiohub_aws to list of configs"	2019-06-25 19:02:49 -07:00
Olga Botvinnik	b82d68c009	Add docs	2019-06-24 17:55:01 -07:00
Olga Botvinnik	b0c67e0a9b	Add both seqCenter and seq_center	2019-06-24 17:52:10 -07:00
Olga Botvinnik	acad9ac7e5	Try to clean up czb update	2019-06-24 17:50:36 -07:00
Szilveszter Juhos	b426332dc1	Merge pull request #50 from szilvajuhos/master ... Using correct reference location for munin	2019-06-24 09:57:43 +02:00
Szilveszter Juhos	f40ed194e3	Using correct reference location for munin	2019-06-24 09:54:37 +02:00
James A. Fellows Yates	505af9a909	Merge pull request #49 from maxibor/master ... Fix queuesize Ccope and Singularity	2019-06-18 20:36:36 +02:00
maxibor	c7eed3fa4c	fix queuesize scope and singularity	2019-06-14 19:16:20 +02:00
Alexander Peltzer	ebe838ac7e	Merge pull request #45 from czbiohub/olgabot/czbiohub ... [WIP] Add CZ Biohub	2019-06-06 13:35:34 +02:00
Olga Botvinnik	ad7e26ea69	Write out docs for czbiohub" ... git push	2019-06-05 14:42:24 -07:00
Olga Botvinnik	268e411d10	Add czbiohub_aws to list	2019-06-05 14:42:15 -07:00
Olga Botvinnik	3a481402b8	Get czbiohub config to work	2019-06-05 14:42:07 -07:00
Alexander Peltzer	de04c5f72b	Merge pull request #47 from tobsecret/master ... updated singularity version in conf/prince.config to reflect version …	2019-06-05 15:13:09 +02:00
Tobias Schraink	4491907f14	updated singularity version in conf/prince.config to reflect version installed on prince ... The prince admins changed the singularity version to 3.2.1 from 3.1.0, making the old version unavailable. To keep this config functional, I updated the version number for singularity.	2019-06-04 12:56:11 -04:00
Alexander Peltzer	515e9484de	Merge pull request #44 from drpatelh/dev ... Add proper nf-core logo	2019-06-01 12:36:57 +02:00
Olga Botvinnik	9c0315addb	Use flat nongzipped files	2019-05-31 13:17:48 -07:00
Olga Botvinnik	1b2fcf5a98	Add author lines	2019-05-31 08:16:51 -07:00
drpatelh	ac804859f4	Add nf-core logo	2019-05-31 00:47:06 +01:00
Olga Botvinnik	66eeeebe81	Initial commit of CZBiohub	2019-05-30 11:15:38 -07:00
Alexander Peltzer	441ddbcdab	Newest Update is 3.0.3	2019-05-28 15:25:10 +02:00
Alexander Peltzer	4cad12c918	Merge pull request #42 from maxibor/master ... Add automounts for singularity	2019-04-25 17:14:28 +02:00
maxibor	de1b2aa7d2	remove autoformat added space	2019-04-25 15:50:48 +02:00
maxibor	efd831a8a3	add automounts for singularity	2019-04-25 15:48:20 +02:00
Alexander Peltzer	7d7c18273b	Merge pull request #41 from tobsecret/master ... Added configs for NYU clusters BigPurple (NYU Med) and Prince (NYU main campus) Last PR merge before Easter holiday ;-)	2019-04-19 00:13:49 +02:00
Tobias Schraink	d91b06d884	added missing line in prince and bigpurple docs	2019-04-18 14:25:27 -04:00
Tobias Schraink	b6c1d3ba51	added bigpurple and prince doc links in README	2019-04-18 14:23:17 -04:00
Tobias Schraink	4ba831705d	added nyu prince and bigpurple md files, added singularity cacheDir to prince and bigpurple configs	2019-04-18 14:13:02 -04:00
Alexander Peltzer	f699c3ad18	Merge pull request #40 from maxibor/master ... Add iGenomes basePath for SHH	2019-04-18 12:21:22 +02:00
maxibor	9d9ac4c3bb	remove whitespace	2019-04-18 11:22:54 +02:00
maxibor	c41dd2c65f	Merge branch 'master' of https://github.com/nf-core/configs	2019-04-18 11:21:27 +02:00
maxibor	1772f4119c	adding igenomes to shh config	2019-04-18 11:19:53 +02:00
Tobias Schraink	4a915e330a	added warnings to run on SCRATCH	2019-04-17 17:15:16 -04:00
Tobias Schraink	51c2a54399	added nyu prince and bigpurple configs	2019-04-17 16:59:38 -04:00
James A. Fellows Yates	37ae0fa3a6	Merge pull request #38 from maxibor/master ... add queueSize limited to 5 for SHH short queue	2019-03-20 13:52:59 +01:00
maxibor	76a5fcf077	switch to queueSize 16 for shh config	2019-03-20 13:44:13 +01:00
maxibor	0929349303	add queueSize limited to 5	2019-03-18 11:13:11 +01:00
Phil Ewels	009e8f52e3	Merge pull request #37 from KochTobi/patch-1 ... Update cfc config	2019-03-16 16:26:46 +01:00
KochTobi	aaa7be049a	Update cfc config ... * Change singularity version documentation	2019-03-16 14:11:59 +01:00
Alexander Peltzer	d95b464e13	Merge pull request #35 from jfy133/master ... Updates to SHH config	2019-03-15 09:56:44 +01:00
James A. Fellows Yates	ecb36dd8c2	Reduced memory and CPUs for cdag compatibility ... Also matches 'fair use' policy	2019-03-14 21:26:43 +01:00