567 commits

Author	SHA1	Message	Date
Falko Hofmann	0950eb3518	Merge pull request #251 from phue/cbe_singularity_workaround ... cbe: send SIGUSR2 upon job termination	2021-10-04 13:24:53 +02:00
Bjørn Peare Bartholdy	e750a6d445	Update conf/alice.config ... Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>	2021-09-28 13:34:12 +02:00
Bjørn Peare Bartholdy	197bd6cfb1	Merge branch 'nf-core:master' into master	2021-09-28 12:09:50 +02:00
bbartholdy	b6ccb46383	add ALICE profile	2021-09-28 12:08:27 +02:00
Mei Wu	79a79f7d8d	added pipeline-specific config	2021-09-28 10:38:25 +02:00
Mei Wu	c2d74b290a	fix md	2021-09-27 16:25:02 +02:00
Mei Wu	a8a2027f70	Merge branch 'master' into hasta	2021-09-27 16:12:23 +02:00
Mei Wu	06fac1dcfc	initial commit	2021-09-27 16:05:32 +02:00
Mei Wu	ae0adb056f	initial commit	2021-09-27 16:05:19 +02:00
Anthony Underwood	6a970dc4a8	update max time for long queue	2021-09-23 11:59:45 +01:00
Patrick Hüther	1cbe2759c4	fix invalid rapid qos selection ... it only applies to the c partition	2021-09-22 11:54:27 +02:00
Anthony Underwood	50df2105fb	update long jobs to be submitted to the long queue	2021-09-21 14:42:59 +01:00
Harshil Patel	5068e4806f	Merge pull request #271 from theoportlock/master ... Adds Rosalind config for KCL!	2021-09-17 13:36:19 +01:00
Harshil Patel	3b95fd9ee3	Update conf/rosalind.config	2021-09-17 13:15:09 +01:00
theoportlock	9116a09afe	Fixes formatting and ignore_params	2021-09-17 13:21:32 +02:00
Marc Trunjer Kusk Nielsen	a55c3c04eb	Update computerome.config ... Adding genomes and modules back into schema_ingore_params to avoid warnings about unexpected parameters.	2021-09-15 19:54:51 +02:00
Marc Trunjer Kusk Nielsen	8b29b5584e	Update computerome.config	2021-09-15 14:20:02 +02:00
Marc Trunjer Kusk Nielsen	ab8a9ad0b8	Update computerome.config	2021-09-15 13:27:23 +02:00
theoportlock	9c97220919	Merge branch 'master' of https://github.com/theoportlock/configs	2021-09-15 11:43:09 +02:00
theoportlock	3c86f8f47c	Removes the broken clusterOptions	2021-09-15 11:42:43 +02:00
Marc Trunjer Kusk Nielsen	aad70fe86d	Merge branch 'nf-core:master' into computerome	2021-09-15 11:08:48 +02:00
Marc Trunjer Kusk Nielsen	29003e13f1	Update computerome.config	2021-09-15 10:22:57 +02:00
James A. Fellows Yates	a7b1183065	Remove 1CPU for host removal fastq	2021-09-14 11:52:21 +02:00
Marc Trunjer Kusk Nielsen	86e21b378a	Update computerome.config	2021-09-13 14:26:10 +02:00
Marc Trunjer Kusk Nielsen	275288632d	Update computerome.config	2021-09-13 14:22:22 +02:00
Marc Trunjer Kusk Nielsen	366f945a40	Update computerome.config	2021-09-13 14:20:55 +02:00
Marc Trunjer Kusk Nielsen	8ebdd43898	Update computerome.config	2021-09-13 14:01:35 +02:00
Marc Trunjer Kusk Nielsen	1071eb9d2e	Update computerome.config	2021-09-13 13:38:46 +02:00
Marc Trunjer Kusk Nielsen	2e515dc861	Update computerome.config ... Don't raise an error when --project is specified	2021-09-13 13:38:25 +02:00
Marc Trunjer Kusk Nielsen	e5cba18c9b	Update computerome.config	2021-09-13 13:28:33 +02:00
Marc Trunjer Kusk Nielsen	0327ef40ea	Update computerome.config	2021-09-13 13:20:57 +02:00
Marc Trunjer Kusk Nielsen	a0ba05fd99	Update computerome.config	2021-09-13 08:36:30 +02:00
Marc Trunjer Kusk Nielsen	84f94d92c4	Update computerome.config ... Added a way to use `--project` to provide project information to the scheduler. Inspired by the uppmax config	2021-09-10 15:10:19 +02:00
Marc Trunjer Kusk Nielsen	463df26c72	Merge branch 'nf-core:master' into computerome	2021-09-10 14:47:05 +02:00
James A. Fellows Yates	7c639ac934	Bump lib merge further	2021-09-09 14:47:20 +02:00
James A. Fellows Yates	0603aba342	Remove debugging stuff	2021-09-09 13:54:01 +02:00
James A. Fellows Yates	c799784629	Merge pull request #273 from jfy133/mpcdf-fix ... Add auto-cleanup for MPCDF	2021-09-09 13:41:29 +02:00
Theo Portlock	05ad3e0577	Update conf/rosalind.config ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2021-09-09 13:37:02 +02:00
James A. Fellows Yates	d479926c7f	Update mpcdf.config	2021-09-09 13:33:56 +02:00
James A. Fellows Yates	7ec12b6736	Update eva.config	2021-09-09 13:10:05 +02:00
James A. Fellows Yates	96e26a5411	Merge pull request #272 from jfy133/eva-eager-subprofiles ... Bump additional library merge memory for eager @ EVA	2021-09-08 15:25:07 +02:00
James A. Fellows Yates	4286a3a342	Bump additional library merge memor	2021-09-08 15:16:40 +02:00
theoportlock	b240142cc3	Adds rosalind configuration	2021-09-08 14:33:39 +02:00
Rogan Grant	a7aca37bc8	Set autoMounts to true	2021-09-06 15:15:46 -05:00
Rogan Grant	b56b7b310b	Merge pull request #266 from RoganGrant/master ... Northwestern University Genomics Nodes (new add)	2021-09-06 13:26:49 -05:00
James A. Fellows Yates	39f54db097	Update container cache	2021-09-05 12:09:02 +02:00
James A. Fellows Yates	59a0901b68	Add library merge steps to have overhead	2021-09-05 12:07:53 +02:00
Rogan Grant	54298ca0f7	Merge branch 'nf-core:master' into master	2021-09-04 15:37:03 -05:00
rogangrant	a8d06ee356	Revert "Forgot a slash :(" ... This reverts commit d5601fea84.	2021-09-04 15:36:05 -05:00
Rogan Grant	d5601fea84	Forgot a slash :(	2021-09-04 15:19:32 -05:00